Tan0002353.1 (mRNA) Snake gourd v1

Overview
NameTan0002353.1
TypemRNA
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG06: 31333895 .. 31336272 (-)
Sequence length303
RNA-Seq ExpressionTan0002353.1
SyntenyTan0002353.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAAAATTGTACATTATAATTATAATAGTTGTGAATTCTTTCTAGCTCTAGAACTTAACTACTTAAGACATTAATAACCTCTTTCAAATTACTACCTCGTGTTTGAATTGTAATCTTAAAGGAAAAAAAAAAACCTTTTTATCCCAAAAATAGTTACTTTTAAAAATTATGAGGTCAAATAAATTTTCAAGGTGAAAAAAATTATTTTTTAATTTTTAAATCTGGAAATTACTTTTGTAAACACGTGATTTCAGCGAAAGAATAGAAAAGAGACACGTGTAATAAACTTTATATTGTATTAATTCTGTGGGTGTGGAGTACAGTCTCTAAGTATGATCCTCTGATTCTTTCTCTTGTATGTGTGTCACTCTTGTATGTGTGCACTCAGGGTTGTAGAGCTTGTTCTCTAGCTTGGAGACTTAGAAGAATCTTTGGTCTCCACGAAGTGCTTAACACCTATGGACTTGAAGTGTTCAACGATCGAAGACTTGTCTTATAACGTTCAACACTTAAAAACTCGTCTTGCAACATTCAACACTAAGGACTTCAGGGAACATTCAACAGTTAAGACTTTGCTTTGAGTTCTCTTGAGAGTGAAATTTTTTAACCTTTGGAATGAAAGGAAAGCTCCCTATTCATAGAACTTTTCAGGACATGCGGGCTTAGACTTAGCAACCTTGGGGTCCAACCATCTGAACCTGAACTTTGTTGACTTTGTACCTAATCATTAACTCACCCAATTCCCTATAACCCAATTTGACCAAAATTAAATGTAATTATTTGGTCCAATTGTATGTTGCCCTCTTTAAATATTTAGAATTTGCCAACTTGTGTCTTCAAATTAAATTTAGGAGACAATGTCGATTTATGATTAGTCCCAAATTTAAATATTTATAACTTCATCATTAATTTGGAATAATGACGTGGGAATTGGGGATTGGTCGAAATTTCTCTGTCAACAAATGCCCTTTTCGAGATTTAGCCACTAGTAGATATGGGTGAATCTTTTGCTCTTGATTTAGACTCCAGTTGATGTGTCAATTTGGTCGAAACATGAGTTTCCTCAGTTTTTTCACGTGACACATTTTAATGCCAATTTATCATGAATTTGGATAGATATTTTGATATATATATATTTTTTGCATGACATATAATTTTGACAAGTTGGAGTGGGTTTTGGAGGTACCCAATTTTTGTTTAATTTTAGAATATTTTGAAACTCGAACTAATTTTGATTTGGCATAAGATTTGGATTATGCCCAAATTCTAACTTTATGAGATAAAAGTTGAAATTCTATCGTGATTTTGACAATTTAAATTTTTAGATGAGGATGGAATTTGATTTTGAATTTTAGTCGAAATTCAAGTTGGAGTGAAATAACTCCCACCTAGTTTAATTTTGCTTTAGAATAGAATTTGAATGTGAACTTTTAATCAAATTATGGGACAAAATTTCGCCCAAGTTCCGGCTATTATCGATCCAAGTTTGATTTGAATATTAGGGATAGAATTTTGATTTGAATTTTAATATAGAATTTTGATTCAAATTCTAATCTAATTGGTAGGGCTCTAGAAGCAAAATTTGCTTTTACTAAATTTTAAACCTTATCCTCCTTTGATTTGAATATGATTAAAACCAAATTTGAGATCTCTTCCATATCTGACTGAGGGATGCAAATCTTGCCACAATTCTTATTACACGTGATCTTTTTTTTTACACAGCAAGCCCCACTGTTTGCTTTTCTTTTTCTTTTTCTTCTTCTTTATGTCTTTTTTTACTTTTTTTTAATCTTCACCCCTTCTCTTCCATTCAGGCAGACGAAGGTTTTTTTTTTTTCTTCTCTTCTTCTTTTTTCTTATTCTATTTCTTTTTTTTTTCCAGGTGCACAGCTGAAGTCCACTCCTCCTTGCCCTTTTTCTTTATCCGGTGAACAACAATTGAAAGTTTCTTCTTCCTCTTGCAGCGTCAGGTAAGCGCATCCACTTTTCCTTCTTCTTCTTCTTTTTTTTTTATCTCCTCCTTCGTCAGTAATTCCATTTTTTAATCCTCTTCCTTTTATCTTTTCTTTTCTTTTTGTTTCTTTAGGTTTATGTTTTTGTTTTTTTTAGCAAGCAAGCACGTCGCACTCGGGTTGTTTTACTTCATCTTCTTTCCTTCTTCCTTCACGCAATCAACAAGAGGTATGAACTTTTTTTCTTTTATTTTCTTTTACTCTTCTTCATTCGTTTTGCAAATAGCAACAAATTGGTATTTATGTATCTTTTTTTGTTTAGAAAGATGAAAAAGAAAGAATCCACGAGTTGTTTGATGAATAAAAGAAACTTAACTTGTAAGGCGAAAACTGTGAGAGAGAGAAATACATGGGGTTTGTGA

mRNA sequence

ATGACAAAAATTGAAAAAAAAAAACCTTTTTATCCCAAAAATAGTGCACAGCTGAAGTCCACTCCTCCTTGCCCTTTTTCTTTATCCGGTGAACAACAATTGAAAGTTTCTTCTTCCTCTTGCAGCGTCAGCAAGCAAGCACGTCGCACTCGGGTTGTTTTACTTCATCTTCTTTCCTTCTTCCTTCACGCAATCAACAAGAGAAAGATGAAAAAGAAAGAATCCACGAGTTGTTTGATGAATAAAAGAAACTTAACTTGTAAGGCGAAAACTGTGAGAGAGAGAAATACATGGGGTTTGTGA

Coding sequence (CDS)

ATGACAAAAATTGAAAAAAAAAAACCTTTTTATCCCAAAAATAGTGCACAGCTGAAGTCCACTCCTCCTTGCCCTTTTTCTTTATCCGGTGAACAACAATTGAAAGTTTCTTCTTCCTCTTGCAGCGTCAGCAAGCAAGCACGTCGCACTCGGGTTGTTTTACTTCATCTTCTTTCCTTCTTCCTTCACGCAATCAACAAGAGAAAGATGAAAAAGAAAGAATCCACGAGTTGTTTGATGAATAAAAGAAACTTAACTTGTAAGGCGAAAACTGTGAGAGAGAGAAATACATGGGGTTTGTGA

Protein sequence

MTKIEKKKPFYPKNSAQLKSTPPCPFSLSGEQQLKVSSSSCSVSKQARRTRVVLLHLLSFFLHAINKRKMKKKESTSCLMNKRNLTCKAKTVRERNTWGL
Homology
The following BLAST results are available for this feature:
BLAST of Tan0002353.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0002353.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0002353.1 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0002353.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Tan0002353Tan0002353gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0002353.1-exonTan0002353.1-exon-LG06:31333895..31333994exon
Tan0002353.1-exonTan0002353.1-exon-LG06:31334088..31334159exon
Tan0002353.1-exonTan0002353.1-exon-LG06:31334299..31334386exon
Tan0002353.1-exonTan0002353.1-exon-LG06:31336117..31336147exon
Tan0002353.1-exonTan0002353.1-exon-LG06:31336261..31336272exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Tan0002353.1-cdsTan0002353.1-cds-LG06:31333895..31333994CDS
Tan0002353.1-cdsTan0002353.1-cds-LG06:31334088..31334159CDS
Tan0002353.1-cdsTan0002353.1-cds-LG06:31334299..31334386CDS
Tan0002353.1-cdsTan0002353.1-cds-LG06:31336117..31336147CDS
Tan0002353.1-cdsTan0002353.1-cds-LG06:31336261..31336272CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Tan0002353.1Tan0002353.1-proteinpolypeptide