Tan0002049.1 (mRNA) Snake gourd v1

Overview


Name	Tan0002049.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	photosystem I reaction center subunit VI, chloroplastic-like
Location	LG04: 85999349 .. 86000660 (-)
Sequence length	435
RNA-Seq Expression	Tan0002049.1
Synteny	Tan0002049.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTAGCAACTCTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTCGGTGGAAGCTCCCTTGCCGGAACCAAGCTGCCCCTCCGGCCCTCTCGCCAGAGCTTGAGACCCAAGAACTTCAAGTACCAAAATCAATCGCTATAAATCTTCTCTTATAGCTTTTTTTATTGGGTTCATTTTGGTTTGAAATCTTATGAAACTTGTGGGGTTTTGTTTGTTTACTCTGTTTTCAGGGCTGGGGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTATTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGGTTTGTGATTCATTTTGTTGCTTTAATGAATTGGAAAAAAAATGGGTTAGAACTGAACAGAGTAATTGGTAAACCTTTGTGGTGGAAATGAAATGAAAGAAGCTTTCTTTGTTTGCTTTTGAACTTTAATCACTTTTTTCAAACTAGGTGTGTTTGTGTTTGGGAGGGCTTTTATAATTAAGTAATCTTAGCAAATTGCTTTAATTATAAGCACTTTTAAGTGCTTGATGGCAAATTATTTTGATATTAAGAACGCCTTCCTAAGTAAGGATTTAAGTGATTTTTACTTTTTCCATTTGAACTTTTAAAACACTTCAATTCAAATATAATGGTTTTTAGGGAAAGTACTTTGAGTATGGAAATTTTTGGCATGAGTAGAAGTACTGTGAAATAACCGTGTCTAACAAGTTGTAAAGGTTCAAAATTAAGTAATTTTAGCTAATGTACTTTGATTATAAGAATTTCTAAGTGGTTGATGGCAAATTACTTTGAGGTTCATGTTTTATACTCTAGGAGTGTTTTTTTCATTAAGGATTTTAGTGTTTTTTACTTTTTTTTCATTATCACTTATAAAACATTTCAATCCAAATATAATGATTTTGAGGGGAAGTACTTTTAAGTAAGGTCAAAGTGATTTTGGCATGGGTAGAAGTACTTAGAACATAATCATTTGTAACATGTTGTAAAGGTTTGAAGTCCTAAGATATCTTTTGTTGCTGCTTGGTTGGATTGAACTTGCTATTGAGTTATTTGGTGTATTTTATAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCGAAACTCGGGCCACGTGGCAAGATCTAA

mRNA sequence

ATGGCTTCCTTAGCAACTCTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTCGGTGGAAGCTCCCTTGCCGGAACCAAGCTGCCCCTCCGGCCCTCTCGCCAGAGCTTGAGACCCAAGAACTTCAAGGCTGGGGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTATTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCGAAACTCGGGCCACGTGGCAAGATCTAA

Coding sequence (CDS)

ATGGCTTCCTTAGCAACTCTAGCCGCCGTTCAGCCGGTCACCGTAAAGGGCCTCGGTGGAAGCTCCCTTGCCGGAACCAAGCTGCCCCTCCGGCCCTCTCGCCAGAGCTTGAGACCCAAGAACTTCAAGGCTGGGGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTATTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGATCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACCTTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTACTAGGTGGTGGTGCCACTTTAGCTTATTTCAGTGCCACTGCCCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCGAAACTCGGGCCACGTGGCAAGATCTAA

Protein sequence

MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Homology

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BLAST of Tan0002049.1 vs. ExPASy Swiss-Prot
Match: P22179 (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSAH PE=1 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 8.4e-62
Identity = 115/144 (79.86%), Postives = 129/144 (89.58%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP T+KGL GSS+AGTKL ++P+RQS +  N ++GA+VAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           AP DVLPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. ExPASy Swiss-Prot
Match: Q9SUI6 (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.9e-60
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP   VKGLGGSSLAG KL ++PSRQS + K+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Tan0002049.1 vs. ExPASy Swiss-Prot
Match: O04006 (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris OX=3711 GN=PSAH PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 7.9e-60
Identity = 116/145 (80.00%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MASLATLAAVQPVT-VKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP + VKGLGGSSL G KL ++PSRQS +PK+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           ++  DVLPIK+GPQ  PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145

[Close]

BLAST of Tan0002049.1 vs. ExPASy Swiss-Prot
Match: Q9SUI7 (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.0e-59
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P   +KGLGGSSLAG KL ++PSR S +PK+ +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

[Close]

BLAST of Tan0002049.1 vs. ExPASy Swiss-Prot
Match: A2Y7D9 (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=PSAH PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-54
Identity = 107/142 (75.35%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 4   LATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSL-RPKNFKAGAVVAKYGDKSVYFDLED 63
           +A+L AVQPV VKGL GSS++G KL +RPS ++L R       AVVAKYG+KSVYFDLED
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLED 60

Query: 64  LGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSATAP 123
           +GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFLLLGGG+ +AY SA+A 
Sbjct: 61  IGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVSASAS 120

Query: 124 DDVLPIKKGPQLPPKLGPRGKI 145
            D+LPIKKGPQLPP  GPRGKI
Sbjct: 121 PDLLPIKKGPQLPPTPGPRGKI 142

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BLAST of Tan0002049.1 vs. NCBI nr
Match: XP_038902740.1 (photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 283.1 bits (723), Expect = 1.3e-72
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSL PKN+KAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLSPKNYKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. NCBI nr
Match: XP_011651500.1 (photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58074.1 hypothetical protein Csa_023410 [Cucumis sativus])

HSP 1 Score: 282.0 bits (720), Expect = 3.0e-72
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQ+ RPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. NCBI nr
Match: XP_022955723.1 (photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata] >XP_022979288.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 282.0 bits (720), Expect = 3.0e-72
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. NCBI nr
Match: XP_023529177.1 (photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 281.6 bits (719), Expect = 3.9e-72
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSCRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. NCBI nr
Match: KAG7018324.1 (Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.8 bits (717), Expect = 6.6e-72
Identity = 140/144 (97.22%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAGTKLPLRP+RQS RPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. ExPASy TrEMBL
Match: A0A6J1IVS0 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111479056 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. ExPASy TrEMBL
Match: A0A0A0LAW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAG KLPLRPSRQ+ RPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGAKLPLRPSRQTFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. ExPASy TrEMBL
Match: A0A6J1GUS6 (photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111457635 PE=3 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQS RPK+FKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSFRPKSFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. ExPASy TrEMBL
Match: A0A5D3C9C3 (Photosystem I reaction center subunit VI OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G001000 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.2e-72
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQS RPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. ExPASy TrEMBL
Match: A0A1S3BI80 (photosystem I reaction center subunit VI, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489943 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.2e-72
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MASLATLAAVQPVTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFDL 60
           MASLATLAAVQP TVKGLGGSSLAG KLPLRPSRQS RPKNFKAGAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPATVKGLGGSSLAGAKLPLRPSRQSFRPKNFKAGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAY+SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYYSAT 120

Query: 121 APDDVLPIKKGPQLPPKLGPRGKI 145
           APDDVLPIKKGPQLPPKLGPRGKI
Sbjct: 121 APDDVLPIKKGPQLPPKLGPRGKI 144

[Close]

BLAST of Tan0002049.1 vs. TAIR 10
Match: AT1G52230.1 (photosystem I subunit H2 )

HSP 1 Score: 231.1 bits (588), Expect = 5.6e-61
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFD 60
           MAS AT+AAVQP   VKGLGGSSLAG KL ++PSRQS + K+ +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
            +  DVLPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

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BLAST of Tan0002049.1 vs. TAIR 10
Match: AT3G16140.1 (photosystem I subunit H-1 )

HSP 1 Score: 229.2 bits (583), Expect = 2.1e-60
Identity = 113/145 (77.93%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 1   MASLATLAAVQP-VTVKGLGGSSLAGTKLPLRPSRQSLRPKNFKAGAVVAKYGDKSVYFD 60
           MASLAT+AAV+P   +KGLGGSSLAG KL ++PSR S +PK+ +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLLGGGATLAYFSA 120
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGG+ L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 121 TAPDDVLPIKKGPQLPPKLGPRGKI 145
           T+  +VLPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

The following BLAST results are available for this feature:

BLAST of Tan0002049.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P22179	8.4e-62	79.86	Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea OX=...	[more]
Q9SUI6	7.9e-60	80.00	Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thalian...	[more]
O04006	7.9e-60	80.00	Photosystem I reaction center subunit VI, chloroplastic OS=Brassica campestris O...	[more]
Q9SUI7	3.0e-59	77.93	Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thalian...	[more]
A2Y7D9	8.5e-54	75.35	Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. i...	[more]

BLAST of Tan0002049.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902740.1	1.3e-72	98.61	photosystem I reaction center subunit VI, chloroplastic-like [Benincasa hispida]	[more]
XP_011651500.1	3.0e-72	97.92	photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus] >KGN58...	[more]
XP_022955723.1	3.0e-72	97.92	photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata...	[more]
XP_023529177.1	3.9e-72	97.92	photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita pepo sub...	[more]
KAG7018324.1	6.6e-72	97.22	Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of Tan0002049.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IVS0	1.4e-72	97.92	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita maxima...	[more]
A0A0A0LAW4	1.4e-72	97.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483830 PE=3 SV=1	[more]
A0A6J1GUS6	1.4e-72	97.92	photosystem I reaction center subunit VI, chloroplastic-like OS=Cucurbita moscha...	[more]
A0A5D3C9C3	4.2e-72	97.22	Photosystem I reaction center subunit VI OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BI80	4.2e-72	97.22	photosystem I reaction center subunit VI, chloroplastic OS=Cucumis melo OX=3656 ...	[more]

BLAST of Tan0002049.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52230.1	5.6e-61	80.00	photosystem I subunit H2	[more]
AT3G16140.1	2.1e-60	77.93	photosystem I subunit H-1	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PFAM	PF03244	PSI_PsaH	coord: 7..144 e-value: 9.8E-71 score: 235.7
IPR004928	Photosystem I PsaH, reaction centre subunit VI	PANTHER	PTHR34787	PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-2, CHLOROPLASTIC	coord: 1..144
None	No IPR available	GENE3D	1.20.5.220		coord: 98..120 e-value: 2.5E-11 score: 45.1
None	No IPR available	PANTHER	PTHR34787:SF6	PHOTOSYSTEM I REACTION CENTER SUBUNIT VI-1, CHLOROPLASTIC-LIKE	coord: 1..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0002049	Tan0002049	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0002049.1-cds	Tan0002049.1-cds-LG04:85999349..85999528	CDS
Tan0002049.1-cds	Tan0002049.1-cds-LG04:86000295..86000421	CDS
Tan0002049.1-cds	Tan0002049.1-cds-LG04:86000533..86000660	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0002049.1-exon	Tan0002049.1-exon-LG04:85999349..85999528	exon
Tan0002049.1-exon	Tan0002049.1-exon-LG04:86000295..86000421	exon
Tan0002049.1-exon	Tan0002049.1-exon-LG04:86000533..86000660	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0002049.1	Tan0002049.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009538	photosystem I reaction center
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane