Tan0001464.1 (mRNA) Snake gourd v1

Overview


Name	Tan0001464.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG10: 4982258 .. 4982995 (+)
Sequence length	351
RNA-Seq Expression	Tan0001464.1
Synteny	Tan0001464.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACAATGAGTTATCGCTCCTCCCGCAAACTCCCCAAAGCCGCCGTTCAAGGCACCGCAGCCGTGGCAGAGCTGCCGATAACGATAAGGAATGTTCGCAAATTTGGATCGTAAGTTGTAATTCATCTCCCCAATCTTAAGCCTCCAAACTAATTTTAGGTTTCTTAGATTGATTGATTTTCCGATCCATCGTGCAAAGAAAACCGCTAAAATCAGTCTTGAACTGATTGGATCATACGTTGTTTAGTTTAATTTCTGTTTTTCGATCTGTCTGGTTTTTGAAGTGAATGCGTATTTGAAGCGGTCTGTTTACGGTTCATTCTTAGTAGTTGCATCCAAACTGTTCGACGAAATTCCTGAACCAAGTATTCAACTAGTTTCATCATTTTGCCTCGTTTTTCATCTCATTCTCTGCTTGATTTCAACAGAATCGCTTAAATTTGGCTGCAAATATGAACCATGGCGTTGCGGCTAGTGATAAAGCAGAGGAGTTGAAAGTTCAAACCTCCATGGGAGCTCTGAATTACTCAATCTCAATGGCCTGCATGTCAAGTAAGATACCAATTACTAAAGACTTTTTGCTCAACAGTTTTGACTCTCTATCTTCTTGCTCTTTTTAAGAACATTTTCATTTATTTGTCAACATGGGCTGCTTGTACATTCTCATCATGATTCAGTTTTCAGAGTCCATGTACATTGAATTGGTCCAATCAAATGTTCAGATTCAGAATTGA

mRNA sequence

ATGACAAACAATGAGTTATCGCTCCTCCCGCAAACTCCCCAAAGCCGCCGTTCAAGGCACCGCAGCCGTGGCAGAGCTGCCGATAACGATAAGGAATGTTCGCAAATTTGGATCAATCGCTTAAATTTGGCTGCAAATATGAACCATGGCGTTGCGGCTAGTGATAAAGCAGAGGAGTTGAAAGTTCAAACCTCCATGGGAGCTCTGAATTACTCAATCTCAATGGCCTGCATGTCAAAACATTTTCATTTATTTGTCAACATGGGCTGCTTGTACATTCTCATCATGATTCAGTTTTCAGAGTCCATGTACATTGAATTGGTCCAATCAAATGTTCAGATTCAGAATTGA

Coding sequence (CDS)

ATGACAAACAATGAGTTATCGCTCCTCCCGCAAACTCCCCAAAGCCGCCGTTCAAGGCACCGCAGCCGTGGCAGAGCTGCCGATAACGATAAGGAATGTTCGCAAATTTGGATCAATCGCTTAAATTTGGCTGCAAATATGAACCATGGCGTTGCGGCTAGTGATAAAGCAGAGGAGTTGAAAGTTCAAACCTCCATGGGAGCTCTGAATTACTCAATCTCAATGGCCTGCATGTCAAAACATTTTCATTTATTTGTCAACATGGGCTGCTTGTACATTCTCATCATGATTCAGTTTTCAGAGTCCATGTACATTGAATTGGTCCAATCAAATGTTCAGATTCAGAATTGA

Protein sequence

MTNNELSLLPQTPQSRRSRHRSRGRAADNDKECSQIWINRLNLAANMNHGVAASDKAEELKVQTSMGALNYSISMACMSKHFHLFVNMGCLYILIMIQFSESMYIELVQSNVQIQN

Homology

The following BLAST results are available for this feature:

BLAST of Tan0001464.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001464.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001464.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0001464.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0001464	Tan0001464	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001464.1-exon	Tan0001464.1-exon-LG10:4982258..4982371	exon
Tan0001464.1-exon	Tan0001464.1-exon-LG10:4982690..4982813	exon
Tan0001464.1-exon	Tan0001464.1-exon-LG10:4982883..4982995	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001464.1-cds	Tan0001464.1-cds-LG10:4982258..4982371	CDS
Tan0001464.1-cds	Tan0001464.1-cds-LG10:4982690..4982813	CDS
Tan0001464.1-cds	Tan0001464.1-cds-LG10:4982883..4982995	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0001464.1	Tan0001464.1-protein	polypeptide