Tan0001006.1 (mRNA) Snake gourd v1

Overview


Name	Tan0001006.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	40S ribosomal protein S16
Location	LG01: 6956304 .. 6957256 (-)
Sequence length	456
RNA-Seq Expression	Tan0001006.1
Synteny	Tan0001006.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTTGCTGTGACGTATTGCAAGCGCGGCCGAGGCTTGATCAAGATCAATGGCTGCCCAATCGAGCTCGTCGAACCAGAGATCTTGCGCTTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCCATCCGCCAGAGCATTGCCAAGGCTCTCGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGGTTTCAGAAATCATATCGTTGATCGGAGATTTTTAGACGTCTATGGCGGAGAGTCGCTTGTTGGTAATGGTTATTTTTGGGATTTATGTTCTAATTACCCTCGGAGACTTGCACTTTTTGATCTGTTTATGATTGTAGTATAAGAAATTTTGACATCGAGGCTTGAATTTCGGATTACTGAGATTGCAGTCGAAATGCTGTTTTGAAACACTAGAGTTTTTCTTCAAGCTGTTACTTCTGGTTGGATACCGAATATCCCTCATTCTTACCCTGCATCACTTGTAATATTAGAGCTACTTTATAGGTCGAAGATTATCCTCGCAAATAGCAATGGGGTCTAGTAATATACTGGGTTTAAGATCATCCTATTTAGACTGTTTCAGACTTAGCATGCTCATGTTTCTAAATGGCTGTACTTTTGTTGGTATAGATAGGATCAATCAATTCTTTTAAACTTCCTCATACTGTGTAGTCTCCATAAAGGCGCCACAATATAGTTGTCTCTTTAATAATCATTCCTCTAATAACCATTCAATCTAG

mRNA sequence

ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTTGCTGTGACGTATTGCAAGCGCGGCCGAGGCTTGATCAAGATCAATGGCTGCCCAATCGAGCTCGTCGAACCAGAGATCTTGCGCTTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCCATCCGCCAGAGCATTGCCAAGGCTCTCGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGTTGTCTCTTTAATAATCATTCCTCTAATAACCATTCAATCTAG

Coding sequence (CDS)

ATGGCGGCTCCAATCGAGTCTGTGCAATGCTTCGGCCGGAAGAAGACGGCAGTTGCTGTGACGTATTGCAAGCGCGGCCGAGGCTTGATCAAGATCAATGGCTGCCCAATCGAGCTCGTCGAACCAGAGATCTTGCGCTTCAAGGCCTACGAACCCATCCTCCTCCTCGGCCGCCATCGTTTCTCCGGCGTCGACATGCGAATCAGAGTCAAAGGCGGAGGCCACACCTCGCAGATCTATGCCATCCGCCAGAGCATTGCCAAGGCTCTCGTCGCCTTCTACCAGAAGTACGTCGACGAACAGAGCAAGAAGGAGATCAAGGACATTCTCGTCCGCTACGATCGGACTTTGCTCGTCGCCGATCCCAGACGCTGTGAGCCGAAGAAGTTTGGTGGTCGTGGAGCTCGTGCTAGTTGTCTCTTTAATAATCATTCCTCTAATAACCATTCAATCTAG

Protein sequence

MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARASCLFNNHSSNNHSI

Homology

[Close]

BLAST of Tan0001006.1 vs. ExPASy Swiss-Prot
Match: P46293 (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 3.7e-68
Identity = 128/133 (96.24%), Postives = 130/133 (97.74%), Query Frame = 0


Query: 5   IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 64
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 65  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 124
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 125 CEPKKFGGRGARA 138
           CEPKKFGGRGARA
Sbjct: 126 CEPKKFGGRGARA 138

[Close]

BLAST of Tan0001006.1 vs. ExPASy Swiss-Prot
Match: Q9SK22 (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.8e-65
Identity = 118/132 (89.39%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARA 138
           EPKKFGGRGAR+
Sbjct: 128 EPKKFGGRGARS 139

[Close]

BLAST of Tan0001006.1 vs. ExPASy Swiss-Prot
Match: Q42340 (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.0e-65
Identity = 117/132 (88.64%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARA 138
           EPKKFGGRGAR+
Sbjct: 128 EPKKFGGRGARS 139

[Close]

BLAST of Tan0001006.1 vs. ExPASy Swiss-Prot
Match: O22647 (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 8.6e-65
Identity = 121/138 (87.68%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 1   MAAP-IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 60
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 61  RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 120
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 121 ADPRRCEPKKFGGRGARA 138
           ADPRRCEPKKFGGRGAR+
Sbjct: 121 ADPRRCEPKKFGGRGARS 138

[Close]

BLAST of Tan0001006.1 vs. ExPASy Swiss-Prot
Match: Q9XEK7 (40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.8e-62
Identity = 115/135 (85.19%), Postives = 130/135 (96.30%), Query Frame = 0


Query: 3   APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 62
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 63  GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 122
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 123 RRCEPKKFGGRGARA 138
           RRCEPKKFGGRGAR+
Sbjct: 122 RRCEPKKFGGRGARS 135

[Close]

BLAST of Tan0001006.1 vs. NCBI nr
Match: KAE8645860.1 (hypothetical protein Csa_017052 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 170 DPRRCEPKKFGGRGARA 186

[Close]

BLAST of Tan0001006.1 vs. NCBI nr
Match: XP_004136973.1 (40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_038877987.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038880326.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038886975.1 40S ribosomal protein S16 [Benincasa hispida] >KAA0031306.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAG6571970.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011649.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0037136.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAA0039084.1 40S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 278.1 bits (710), Expect = 4.5e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 121 DPRRCEPKKFGGRGARA 137

[Close]

BLAST of Tan0001006.1 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 277.7 bits (709), Expect = 5.9e-71
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 121 DPRRCEPKKFGGRGARA 137

[Close]

BLAST of Tan0001006.1 vs. NCBI nr
Match: KAA8536211.1 (hypothetical protein F0562_028689 [Nyssa sinensis])

HSP 1 Score: 277.3 bits (708), Expect = 7.7e-71
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARAS 139
           DPRRCEPKKFGGRGARAS
Sbjct: 121 DPRRCEPKKFGGRGARAS 138

[Close]

BLAST of Tan0001006.1 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 276.9 bits (707), Expect = 1.0e-70
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MA+PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 121 DPRRCEPKKFGGRGARA 137

[Close]

BLAST of Tan0001006.1 vs. ExPASy TrEMBL
Match: A0A6J1J781 (40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 121 DPRRCEPKKFGGRGARA 137

[Close]

BLAST of Tan0001006.1 vs. ExPASy TrEMBL
Match: A0A0A0L6F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 121 DPRRCEPKKFGGRGARA 137

[Close]

BLAST of Tan0001006.1 vs. ExPASy TrEMBL
Match: A0A1S3C210 (40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 121 DPRRCEPKKFGGRGARA 137

[Close]

BLAST of Tan0001006.1 vs. ExPASy TrEMBL
Match: A0A6J1D637 (40S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 121 DPRRCEPKKFGGRGARA 137

[Close]

BLAST of Tan0001006.1 vs. ExPASy TrEMBL
Match: A0A6J1FW85 (40S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447898 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.2e-71
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 121 DPRRCEPKKFGGRGARA 138
           DPRRCEPKKFGGRGARA
Sbjct: 121 DPRRCEPKKFGGRGARA 137

[Close]

BLAST of Tan0001006.1 vs. TAIR 10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 248.8 bits (634), Expect = 2.7e-66
Identity = 118/132 (89.39%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARA 138
           EPKKFGGRGAR+
Sbjct: 128 EPKKFGGRGARS 139

[Close]

BLAST of Tan0001006.1 vs. TAIR 10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 248.4 bits (633), Expect = 3.6e-66
Identity = 117/132 (88.64%), Postives = 128/132 (96.97%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARA 138
           EPKKFGGRGAR+
Sbjct: 128 EPKKFGGRGARS 139

[Close]

BLAST of Tan0001006.1 vs. TAIR 10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 234.2 bits (596), Expect = 7.0e-62
Identity = 111/132 (84.09%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 126 EPKKFGGRGARA 138
           E KKFGG GARA
Sbjct: 128 ESKKFGGPGARA 139

[Close]

BLAST of Tan0001006.1 vs. TAIR 10
Match: AT5G18380.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 227.6 bits (579), Expect = 6.5e-60
Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 125
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 126 EPKKF 131
           E  +F
Sbjct: 128 ELFRF 132

[Close]

BLAST of Tan0001006.1 vs. TAIR 10
Match: AT5G18380.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 198.0 bits (502), Expect = 5.5e-51
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 6   ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 65
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 66  MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 114
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVR+
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

The following BLAST results are available for this feature:

BLAST of Tan0001006.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46293	3.7e-68	96.24	40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1	[more]
Q9SK22	3.8e-65	89.39	40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1	[more]
Q42340	5.0e-65	88.64	40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1	[more]
O22647	8.6e-65	87.68	40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1	[more]
Q9XEK7	6.8e-62	85.19	40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1	[more]

BLAST of Tan0001006.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645860.1	4.5e-71	100.00	hypothetical protein Csa_017052 [Cucumis sativus]	[more]
XP_004136973.1	4.5e-71	100.00	40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protei...	[more]
XP_022149351.1	5.9e-71	99.27	40S ribosomal protein S16-like [Momordica charantia]	[more]
KAA8536211.1	7.7e-71	98.55	hypothetical protein F0562_028689 [Nyssa sinensis]	[more]
XP_022989000.1	1.0e-70	99.27	40S ribosomal protein S16-like [Cucurbita maxima]	[more]

BLAST of Tan0001006.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J781	2.2e-71	100.00	40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 ...	[more]
A0A0A0L6F6	2.2e-71	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1	[more]
A0A1S3C210	2.2e-71	100.00	40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1	[more]
A0A6J1D637	2.2e-71	100.00	40S ribosomal protein S16 OS=Momordica charantia OX=3673 GN=LOC111017623 PE=3 SV...	[more]
A0A6J1FW85	2.2e-71	100.00	40S ribosomal protein S16-like OS=Cucurbita moschata OX=3662 GN=LOC111447898 PE=...	[more]

BLAST of Tan0001006.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G09990.1	2.7e-66	89.39	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	3.6e-66	88.64	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	7.0e-62	84.09	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.2	6.5e-60	86.40	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.3	5.5e-51	86.11	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 2..143 e-value: 6.7E-51 score: 174.3
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 12..139 e-value: 1.5E-28 score: 99.7
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 4..138
None	No IPR available	PANTHER	PTHR21569:SF28	SUBFAMILY NOT NAMED	coord: 4..138
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 72..90
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 7..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0001006	Tan0001006	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001006.1-exon	Tan0001006.1-exon-LG01:6956304..6956346	exon
Tan0001006.1-exon	Tan0001006.1-exon-LG01:6956844..6957256	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0001006.1-cds	Tan0001006.1-cds-LG01:6956304..6956346	CDS
Tan0001006.1-cds	Tan0001006.1-cds-LG01:6956844..6957256	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0001006.1	Tan0001006.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0009809	lignin biosynthetic process
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0032259	methylation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0042409	caffeoyl-CoA O-methyltransferase activity
molecular_function	GO:0003723	RNA binding