Spg040027.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg040027.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 24494214 .. 24495983 (-)
Sequence length879
RNA-Seq ExpressionSpg040027.1
SyntenySpg040027.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCACCAAAGTCTCGCGAAAAAGTGTTATGGGTTAGAGATGACCCTTAAGGCTGGCCATGGTCGCGTGCAAGATCATGGCGCCGCACGGTTGGAAAGGTACGACCGTGACAGTTGGTATCAGAGCCCCACTTTGTGTGCGTAGTCGGACGAGACAGAGAAACCCGATGGTCAGATTGAAGACTTCACGATTGTGTCAAGAGTGCCAGTTTCGGCAGGGCAGTTGTGTTGTCAGTATCAGAGACAGAAAGGGTATTGAAGCCGGACTCTTTGAGAGAGTCCAACCCGTCAGAGTGCAAGAACCAAGTCCATTTGCCAAGGGCTTGGGTATCAGTTGAGCAAGTTAAATCAGAAGGTGTACCAGGTAGGGTGCCTTCGAAAGAGCCATTATCACCAGAGGGATAGTGTTAATGGTTGCAAGCAGAGAAAGCCGGGGGTCGTTGTGACATCGCCGGTCAAGTGCCAGAGTTGAGCATCAAGAAAGCCTATATGGGTGGGCGATCTGGGCTGCGTAGAGCCAGTGATTGGGAAAGAGCCCGAGAGAATGGGTTGCTTGTCCCGTGAAGACGCTCGTGTGTCGAGCGAGTGTGTCCCTTAAGTCACTTCACATGCCTAAGTGGGTGGCTTCACAGTTGTCAAGACCAGCAATTTGCTCGAGATGGAGCACCAGGCTGGAGACAGAGCAGAAAGAAGAAGAAGCTGCTGCAAGTTCCGACAGAAGCATCGGTGCAGCGATTGCCACATGAAGGTGGCCAGTTGTTAGTTGGCCAAAGGGGAGTGCCAACAGAGAGAATGGGCTGTGTCATGCTTTCAGATGTCCGCACCATAAGGGATGGTGTCACGATGACAGAATTCCGTGGTAGGCTTGCGAGCCTCACCCCGCGGGGTGCACCTTTTTATGTGCCGCTCAGAGAATATGTGTGTAAGTGGCCATGAGTGCCAAGAGAAATCGGGGCGCGCTCCCCGTAAGCGGAGGCGAAGAGAATGCCAAAGCTTAGCCGTGTTCTGTTAGAAGATCCTCGGGCCGAGTCCTAAAGTTGGGCGAACAGTGTAGGTCCACGAAGAAGGGGGTAGTCTGCAGGCATTGTGCTTTTTGCCGTGTCTACGTTGCGAGTCTCGGGGCCGAGTCCTAAAGTTGGGCGAACATTATAGGTCCAAGAGTGGGATAGCTCGTAGATAGTGTGCAGTTATGTTTGCCTTGCCTATGTTGCGAGTCTCGGGGCCAAGTCCTAAAATTGGGCGAACAGTGTAGGTCCGTGGGTGGGATAGCTCATAGGTAGTGCGCAATTTCCATATTCGTTCTGATGCACAATATTTCAGCGGGTCCGTCAGCAGCCAGTCCGAAGTCGGATCGTCATCGGGACGATGCCGAGATTAAGTGGGGGAGAATGTCACAATCCATCGTGCAAGTGATGTGGATTGTGCCCCCAAGTATGTCATCGAGGACGATGACAGTTTAAGTGGGGGAGAATGTCACAACCATACTAGAAGAGAGTAGGTTGTGACCCTCACTGAGCAGACAGTGAAGTGGTGGCACGTCGAGTGTCGCCCATCGGGCCATGTCAGAGGGCCGAGAGAGAGAAGTGCCATGATGCGATCGAGGAGGACGATGCATCATCCAACACACCAAGATGAGTGGACATTGATGTCACAAGAAGGCATGAGCATATTGAGAAGCAACAGTGTCGTCAGACGCGTCAGTGGTATGCTTAATGGGGGTCAGATGGGGCCCCGAGCCATGACCTCGGAAGTCGGGGTTCCGTCGTGA

mRNA sequence

ATGAAGCACCAAAGTCTCGCGAAAAAGTGTTATGGGTTAGAGATGACCCTTAAGGCTGGCCATGGTCGCGTGCAAGATCATGGCGCCGCACGGTTGGAAAGGGCAGTTGTGTTGTCAGTATCAGAGACAGAAAGGGTATTGAAGCCGGACTCTTTGAGAGAGTCCAACCCGTCAGAGTGCAAGAACCAAGTCCATTTGCCAAGGGCTTGGGTATCAGTTGAGCAAGTTAAATCAGAAGGTGTACCAGAGAAAGCCGGGGGTCGTTGTGACATCGCCGGTCAAGTGCCAGAGTTGAGCATCAAGAAAGCCTATATGGGTGGGCGATCTGGGCTGCGTAGAGCCAGTGATTGGGAAAGAGCCCGAGAGAATGGTTGTCAAGACCAGCAATTTGCTCGAGATGGAGCACCAGGCTGGAGACAGAGCAGAAAGAAGAAGAAGCTGCTGCAAGTTCCGACAGAAGCATCGGTGCAGCGATTGCCACATGAAGGTGGCCAGTTGTTAGTTGGCCAAAGGGGAGTGCCAACAGAGAGAATGGGCTGTGTCATGCTTTCAGATGTCCGCACCATAAGGGATGGTGTCACGATGACAGAATTCCGTGGTAGGCTTGCGAGCCTCACCCCGCGGGGTGCACCTTTTTATGTGCCGCTCAGAGAATATGTGTCGGGTCCGTCAGCAGCCAGGCCGAGAGAGAGAAGTGCCATGATGCGATCGAGGAGGACGATGCATCATCCAACACACCAAGATGAGTGGACATTGATGTCACAAGAAGGCATGAGCATATTGAGAAGCAACAGTGTCGTCAGACGCGTCAGTGGTATGCTTAATGGGGGTCAGATGGGGCCCCGAGCCATGACCTCGGAAGTCGGGGTTCCGTCGTGA

Coding sequence (CDS)

ATGAAGCACCAAAGTCTCGCGAAAAAGTGTTATGGGTTAGAGATGACCCTTAAGGCTGGCCATGGTCGCGTGCAAGATCATGGCGCCGCACGGTTGGAAAGGGCAGTTGTGTTGTCAGTATCAGAGACAGAAAGGGTATTGAAGCCGGACTCTTTGAGAGAGTCCAACCCGTCAGAGTGCAAGAACCAAGTCCATTTGCCAAGGGCTTGGGTATCAGTTGAGCAAGTTAAATCAGAAGGTGTACCAGAGAAAGCCGGGGGTCGTTGTGACATCGCCGGTCAAGTGCCAGAGTTGAGCATCAAGAAAGCCTATATGGGTGGGCGATCTGGGCTGCGTAGAGCCAGTGATTGGGAAAGAGCCCGAGAGAATGGTTGTCAAGACCAGCAATTTGCTCGAGATGGAGCACCAGGCTGGAGACAGAGCAGAAAGAAGAAGAAGCTGCTGCAAGTTCCGACAGAAGCATCGGTGCAGCGATTGCCACATGAAGGTGGCCAGTTGTTAGTTGGCCAAAGGGGAGTGCCAACAGAGAGAATGGGCTGTGTCATGCTTTCAGATGTCCGCACCATAAGGGATGGTGTCACGATGACAGAATTCCGTGGTAGGCTTGCGAGCCTCACCCCGCGGGGTGCACCTTTTTATGTGCCGCTCAGAGAATATGTGTCGGGTCCGTCAGCAGCCAGGCCGAGAGAGAGAAGTGCCATGATGCGATCGAGGAGGACGATGCATCATCCAACACACCAAGATGAGTGGACATTGATGTCACAAGAAGGCATGAGCATATTGAGAAGCAACAGTGTCGTCAGACGCGTCAGTGGTATGCTTAATGGGGGTCAGATGGGGCCCCGAGCCATGACCTCGGAAGTCGGGGTTCCGTCGTGA

Protein sequence

MKHQSLAKKCYGLEMTLKAGHGRVQDHGAARLERAVVLSVSETERVLKPDSLRESNPSECKNQVHLPRAWVSVEQVKSEGVPEKAGGRCDIAGQVPELSIKKAYMGGRSGLRRASDWERARENGCQDQQFARDGAPGWRQSRKKKKLLQVPTEASVQRLPHEGGQLLVGQRGVPTERMGCVMLSDVRTIRDGVTMTEFRGRLASLTPRGAPFYVPLREYVSGPSAARPRERSAMMRSRRTMHHPTHQDEWTLMSQEGMSILRSNSVVRRVSGMLNGGQMGPRAMTSEVGVPS
Homology
The following BLAST results are available for this feature:
BLAST of Spg040027.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg040027.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg040027.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg040027.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 273..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..244

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg040027Spg040027gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg040027.1-cdsSpg040027.1-cds-scaffold10:24494214..24494413CDS
Spg040027.1-cdsSpg040027.1-cds-scaffold10:24494644..24494661CDS
Spg040027.1-cdsSpg040027.1-cds-scaffold10:24495060..24495349CDS
Spg040027.1-cdsSpg040027.1-cds-scaffold10:24495434..24495557CDS
Spg040027.1-cdsSpg040027.1-cds-scaffold10:24495618..24495763CDS
Spg040027.1-cdsSpg040027.1-cds-scaffold10:24495883..24495983CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg040027.1Spg040027.1-proteinpolypeptide