Spg034983.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg034983.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionSerine/threonine-protein phosphatase 7 long form-like protein
Locationscaffold3: 24249372 .. 24252503 (-)
Sequence length510
RNA-Seq ExpressionSpg034983.1
SyntenySpg034983.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCATCTACCACCGGTCACCTTGCCGCCGTTGCCCTCCGTCGTCGCCACCGCCGTACTCCATTTTTTCCCTCTTTTCTTCTTTTCCCCTTTCCCCTTCTCCTTTCTCTCTTTTCTCTCTGTTCGCGTAAGGATGCGTCGTGGGTCTGTTCGCTCGTGTCTGCCGTAGATCTGTTTGCGTGGGTGCCATCTGAGCTATTTCCTGTACTGCCGTGGGTCTATTCGCACAGGTCTGCTGCTGTTCGTGTGGGTTTTTTTGCTGCCGTTTGAGATCTTCGCGTGGGTAATCGCTACACCGTCGTCGCCTCGCCCGTGGATCTGTTCGCCCGTGAACCAGTCGTTCGACGTGGGTTGATCATCGGTCCGCGCGCCAGATCTGAGGTTTTCTTCTTGCGAACTGCCGCCTCTGCTTGCCGGAGGAGACAACCGGAGATGGGGGGTGGCTGGGTTCAGAAACGAAGGGAGAGTAAAAAAAAAAAAGAAAACAAGAGAAAATGAGAGGAAAGAAAAGAGGAAGAAAAGAGGAAAAAAAAAGTTGCCGGCGGTCGATCGGTGGTCGGCGGCAACTGGTTGCTGCCAGCGGGGTTGGGAGGTGGTGGGGTTTTTTGAAGAAGAAGAACTATTGTGGTTGTTGGAGAAGATGAAGAAGTGGGGTTGTTGGAGAAGAAGAGATATGGAAATAAAAATATATAAAAATAATAATATTTTTATTATAATAATGTATTTTCAAAAAATAAAATTTTAAATAATTTTGTTAAATAAAAAATTAGTGCCACGTCAGCATTCCATTAATTATTAACGGAAAATTGGATGGAGGGACCAAAATGAAACTAAAACCAAACCTCAGGGACTAAATTGTTGAGTTTGAAAACTCAGGGACCAAAATGAAACCTAACCCAAACCTCAGGGACTAAAAGTGTATTTTTCCCTATTTTTTTATTATAATATTATTATTTTTCAATCTCTCTCTTAATTTTTTCCCTTCTTCTTCATCCTCACTCTCCACTCTCCTTCATCTCTTCCCACCTCTTCCTTCTTCTTCTCCAAGTCTCCGACGACCTGCGACCGGCCACCGCTCGCCACCGCCGGCGACTTTTTTTTTCTTCCCCTTTCTTCTTCTCTTACCCCATTTTTCTTCCTTTTTTATTAAAAAAAAAATAGAAGGAGGAGGGTCCTCCCTCCTCCTTCGTTTCCAGTCGGAAACAGAGGAGGGACATCCCTCCTCCCTCTTGTATATTTTTTTAAAAAAAAAAAGAAAAAAAAAGAAAAATGGAGTAAGAGAAGAAGAAAGGAGAAGAAAAGAGAAAGAAAAAAAAACAGTCGCTGGCAGCGGTGGCTGCCGGTCGCCGGACATAAGAGGAAGAAGGAAGAGGATGAAGAGGAAGAAGATGAAGAAGAAGAAGGAGAGACAGGGATAAAGAATATTAAATATTAATAAAATAATAAAATTTTATTATTTTAATATTTTTATTTAAAAAAATTAGAAAAATAATTTTTTTATTAAAATAATAGTGCCACGTCAGCAGCCGTTAAGATTTAACAAAAAAATTGACGGCAGGGACCAAAGTGCTCCTTATCTCAAACCTCAGGGGTATTTTTGTTGAGTTTGAAAACTCAGGGACCAAAGTGTCACTTAACCCAAACCTCAGGGACCAAAAGTGTATTTTTCCCTATAAAAAATAGTTTAATTCTACCATGAAATCAGGGGTGGGGGTGAAATCAGGAGTGAGAGGGGTATAATTGGAAGAATAATTCATGACGAAATAAGTTAAAAAAACGATTTAGCCATTTTTCATTGAAAAAATCTGTTTGGCCATTTTTCAAAAAGTACAGTGGAAATCTGGCCATTTTTAAGGATTTCCCTATTTTATATGATCTGATTCACACTTTTTGCGTCTTTTTTGGACTAATTTGTGGTGGTCTGTGTGAATATTTGGATGATTATATATACCTTTTTCGGCCTCTTTGGACTGGTTTATTTAATTTTTGTATTTTTTTGGATTGATGTGACATATTTTTCATGCAGTTGAAAAAAATAAATATTTAATTAATATTTTTCAGTTATTGTCAAATTAGTAAAATATGTCATTGCCTCATGAGAAGTTAGTGATACTTGAACCTGAAAATGGTGGGGATAGTGATATAGAGGCAAAAATTGATGAATTATTTGGAGAGAATGTTAATATTAATCCTCCCCCTAAAAAGCAAAATGAGGAGCTCCTGTAGTGGACTTTGTAATGGATCTTGTAATGGATTTTGTAATGGTCTTTGTAATGGACTTATATTACTTTCATATTTATAATGGACTTATGTGTTTTTGTAATGTACTTATGTGCTTACCGGACTATTGCTATAATGGATAGGAGATTTGGTTGACTGTAAGCCATCTCATATGTTTTCATATTGTAGAGTGACAACCCAAATCGAGTGCTGAGACAATTTGGAATGCAACAAATGGTGCCGCCATATTGGGATACAGTCATGGAGTTACATCAGTTGGACTTGCGAGGTAAACACGATCACGATTGGCGACAACATCATGCAACATTTATATCACTGTGGCGTGCACGTCATGATCATTATGTCTTGGGCAACATAGTAGACATGTCGCTGTGTCTGATGACTACTTACACTGGTATGATTCAATCACAATGAGGTATATCACGCGTGAGGGTGCTTTTTATGCTTGCATGGTAAATAGTATATACTTCGATTTGTTATTATTGAATTTCAATTATAAATATTTTGATTATATTATTTTAATTATTTTCTTCTTACAGAATAATTTTGTTCGAGATGTGTAACATTTTTCTGTGGAACAAAATATACCACAGTTAGGTTCTATGTGAGCAATACGTCACGAACATAACTGACATCATTCAACAAACTAGGAGGCTGACCGTTGCTGACACTGATCAGACACTGATCAGACACGTGCTTGTCGTAGACGTCGTCGGCAACATGAGGCTGCAGACATTCCACAGCAGAACGAAGATGGAGAACCTCCTATAGTTGATGATGACACTTCAGCTCTTCGTGTACAATCATTGGCAGATCAAATAGACATTGCTTCAAGTTCTGATCATGGTGACATAACTCAACAAGATATTGATGATGTGATTCATCATTAA

mRNA sequence

ATGGCCATCTACCACCGGTCACCTTGCCGCCGTTGCCCTCCGTCGTCGCCACCGCCGTCTGCTGCTGTTCGTAGTGACAACCCAAATCGAGTGCTGAGACAATTTGGAATGCAACAAATGGTGCCGCCATATTGGGATACAGTCATGGAGTTACATCAGTTGGACTTGCGAGGTAAACACGATCACGATTGGCGACAACATCATGCAACATTTATATCACTGTGGCGTGCACGTCATGATCATTATGTCTTGGGCAACATAGTAGACATGTCGCTGTGTCTGATGACTACTTACACTGACACTGATCAGACACGTGCTTGTCGTAGACGTCGTCGGCAACATGAGGCTGCAGACATTCCACAGCAGAACGAAGATGGAGAACCTCCTATAGTTGATGATGACACTTCAGCTCTTCGTGTACAATCATTGGCAGATCAAATAGACATTGCTTCAAGTTCTGATCATGGTGACATAACTCAACAAGATATTGATGATGTGATTCATCATTAA

Coding sequence (CDS)

ATGGCCATCTACCACCGGTCACCTTGCCGCCGTTGCCCTCCGTCGTCGCCACCGCCGTCTGCTGCTGTTCGTAGTGACAACCCAAATCGAGTGCTGAGACAATTTGGAATGCAACAAATGGTGCCGCCATATTGGGATACAGTCATGGAGTTACATCAGTTGGACTTGCGAGGTAAACACGATCACGATTGGCGACAACATCATGCAACATTTATATCACTGTGGCGTGCACGTCATGATCATTATGTCTTGGGCAACATAGTAGACATGTCGCTGTGTCTGATGACTACTTACACTGACACTGATCAGACACGTGCTTGTCGTAGACGTCGTCGGCAACATGAGGCTGCAGACATTCCACAGCAGAACGAAGATGGAGAACCTCCTATAGTTGATGATGACACTTCAGCTCTTCGTGTACAATCATTGGCAGATCAAATAGACATTGCTTCAAGTTCTGATCATGGTGACATAACTCAACAAGATATTGATGATGTGATTCATCATTAA

Protein sequence

MAIYHRSPCRRCPPSSPPPSAAVRSDNPNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLGNIVDMSLCLMTTYTDTDQTRACRRRRRQHEAADIPQQNEDGEPPIVDDDTSALRVQSLADQIDIASSSDHGDITQQDIDDVIHH
Homology
[Close]
BLAST of Spg034983.1 vs. NCBI nr
Match: XP_038906359.1 (serine/threonine-protein phosphatase 7 long form homolog [Benincasa hispida])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLGNI 87
           P+RVLRQF  +Q VPP  DT  +LHQLDLRGK D+DWR  HA +IS W  R +    G +
Sbjct: 525 PDRVLRQFKFRQCVPPNCDTDKQLHQLDLRGKRDNDWRHQHAQYISAWGLRRECCASGEV 584

Query: 88  VDMSLCLMTTY 99
           +   + +   Y
Sbjct: 585 IQDGIGVSDNY 595

[Close]
BLAST of Spg034983.1 vs. NCBI nr
Match: XP_022152173.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-09
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLGNI 87
           P+RVLRQF ++Q VPP+ +T  +LHQLDLRG++D+DWR+ HA +IS W  R +    G +
Sbjct: 656 PDRVLRQFRLRQYVPPHCNTDTQLHQLDLRGRYDNDWRREHARYISAWGLRRECCASGKV 715

Query: 88  V 89
           +
Sbjct: 716 I 716

[Close]
BLAST of Spg034983.1 vs. NCBI nr
Match: KAA0043956.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 7.2e-09
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 23  VRSDNPNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHY 82
           V    P+RVLRQF M QM P    T   LHQ+DLRGKHD DWRQ HA  I +W +R+D  
Sbjct: 121 VEKHQPDRVLRQFNMLQMPPAISYTDQRLHQIDLRGKHDQDWRQIHAEHIGVWNSRYDFR 180

Query: 83  V 84
           V
Sbjct: 181 V 181

[Close]
BLAST of Spg034983.1 vs. NCBI nr
Match: XP_015890868.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X3 [Ziziphus jujuba])

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-08
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLG 86
           P+RVLRQFG+ Q +P + DT ++LH +D RG+H +DW+ +H  +I LW AR ++   G
Sbjct: 508 PDRVLRQFGLHQAIPVHCDTEVKLHAIDRRGRHHYDWQAYHGRYIQLWEAREENIATG 565

[Close]
BLAST of Spg034983.1 vs. NCBI nr
Match: XP_015890866.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Ziziphus jujuba])

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-08
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLG 86
           P+RVLRQFG+ Q +P + DT ++LH +D RG+H +DW+ +H  +I LW AR ++   G
Sbjct: 508 PDRVLRQFGLHQAIPVHCDTEVKLHAIDRRGRHHYDWQAYHGRYIQLWEAREENIATG 565

[Close]
BLAST of Spg034983.1 vs. ExPASy Swiss-Prot
Match: Q9LNG5 (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.8e-08
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLG 86
           P+RVLRQFG+ Q +P   D    LH +D RGK ++DW   H+  I LW AR    V G
Sbjct: 360 PDRVLRQFGLHQTIPAPCDNEKALHAIDKRGKSEYDWSARHSRHIGLWEARVSSVVSG 417

[Close]
BLAST of Spg034983.1 vs. ExPASy TrEMBL
Match: A0A6J1DE57 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111019957 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 9.1e-10
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLGNI 87
           P+RVLRQF ++Q VPP+ +T  +LHQLDLRG++D+DWR+ HA +IS W  R +    G +
Sbjct: 656 PDRVLRQFRLRQYVPPHCNTDTQLHQLDLRGRYDNDWRREHARYISAWGLRRECCASGKV 715

Query: 88  V 89
           +
Sbjct: 716 I 716

[Close]
BLAST of Spg034983.1 vs. ExPASy TrEMBL
Match: A0A5A7TPE7 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G003010 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-09
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 23  VRSDNPNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHY 82
           V    P+RVLRQF M QM P    T   LHQ+DLRGKHD DWRQ HA  I +W +R+D  
Sbjct: 121 VEKHQPDRVLRQFNMLQMPPAISYTDQRLHQIDLRGKHDQDWRQIHAEHIGVWNSRYDFR 180

Query: 83  V 84
           V
Sbjct: 181 V 181

[Close]
BLAST of Spg034983.1 vs. ExPASy TrEMBL
Match: A0A1S3CE15 (serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656 GN=LOC103499383 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 0 

Query: 27  NPNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLGN 86
           +P RVLRQFG+ Q +P   DT  +LH +D RGKH +DW+ +H  +I LW AR +    G 
Sbjct: 507 HPERVLRQFGLHQEIPQPCDTGTKLHMIDRRGKHHYDWKAYHGQYIKLWEARENSIATGK 566

Query: 87  IVDMSL 93
           + ++ +
Sbjct: 567 LEELPM 572

[Close]
BLAST of Spg034983.1 vs. ExPASy TrEMBL
Match: A0A6P4A5V7 (serine/threonine-protein phosphatase 7 long form homolog isoform X2 OS=Ziziphus jujuba OX=326968 GN=LOC107425379 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLG 86
           P+RVLRQFG+ Q +P + DT ++LH +D RG+H +DW+ +H  +I LW AR ++   G
Sbjct: 425 PDRVLRQFGLHQAIPVHCDTEVKLHAIDRRGRHHYDWQAYHGRYIQLWEAREENIATG 482

[Close]
BLAST of Spg034983.1 vs. ExPASy TrEMBL
Match: A0A6P4AA91 (serine/threonine-protein phosphatase 7 long form homolog isoform X3 OS=Ziziphus jujuba OX=326968 GN=LOC107425379 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-08
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLG 86
           P+RVLRQFG+ Q +P + DT ++LH +D RG+H +DW+ +H  +I LW AR ++   G
Sbjct: 508 PDRVLRQFGLHQAIPVHCDTEVKLHAIDRRGRHHYDWQAYHGRYIQLWEAREENIATG 565

[Close]
BLAST of Spg034983.1 vs. TAIR 10
Match: AT1G48120.1 (hydrolases;protein serine/threonine phosphatases )

HSP 1 Score: 59.3 bits (142), Expect = 3.4e-09
Identity = 27/58 (46.55%), Postives = 34/58 (58.62%), Query Frame = 0 

Query: 28  PNRVLRQFGMQQMVPPYWDTVMELHQLDLRGKHDHDWRQHHATFISLWRARHDHYVLG 86
           P+RVLRQFG+ Q +P   D    LH +D RGK ++DW   H+  I LW AR    V G
Sbjct: 360 PDRVLRQFGLHQTIPAPCDNEKALHAIDKRGKSEYDWSARHSRHIGLWEARVSSVVSG 417

The following BLAST results are available for this feature:
BLAST of Spg034983.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906359.11.1e-0947.89serine/threonine-protein phosphatase 7 long form homolog [Benincasa hispida][more]
XP_022152173.11.9e-0950.82serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Momordica c... [more]
KAA0043956.17.2e-0955.74serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
XP_015890868.12.7e-0846.55serine/threonine-protein phosphatase 7 long form homolog isoform X3 [Ziziphus ju... [more]
XP_015890866.12.7e-0846.55serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Ziziphus ju... [more]
BLAST of Spg034983.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LNG54.8e-0846.55Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana... [more]
BLAST of Spg034983.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DE579.1e-1050.82serine/threonine-protein phosphatase 7 long form homolog isoform X1 OS=Momordica... [more]
A0A5A7TPE73.5e-0955.74Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A1S3CE151.3e-0842.42serine/threonine-protein phosphatase 7 long form homolog OS=Cucumis melo OX=3656... [more]
A0A6P4A5V71.3e-0846.55serine/threonine-protein phosphatase 7 long form homolog isoform X2 OS=Ziziphus ... [more]
A0A6P4AA911.3e-0846.55serine/threonine-protein phosphatase 7 long form homolog isoform X3 OS=Ziziphus ... [more]
BLAST of Spg034983.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48120.13.4e-0946.55hydrolases;protein serine/threonine phosphatases [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..133

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg034983Spg034983gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg034983.1-cdsSpg034983.1-cds-scaffold3:24249372..24249583CDS
Spg034983.1-cdsSpg034983.1-cds-scaffold3:24249868..24250093CDS
Spg034983.1-cdsSpg034983.1-cds-scaffold3:24252257..24252272CDS
Spg034983.1-cdsSpg034983.1-cds-scaffold3:24252448..24252503CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg034983.1Spg034983.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0048507 meristem development