Spg034856.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg034856.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold3: 24113715 .. 24116542 (-)
Sequence length	594
RNA-Seq Expression	Spg034856.1
Synteny	Spg034856.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGGTCATTTTGAGGACTCCAAGACCTTTAAAGAAGAAGAGTTAGGCCAAAAAGTGAAGGAGAAGCCCAAAAATCAGCCAAAATCTGAATCTGGAATTTCCCAACCGAAGGACAGCATCGAGACGCTGTCTCTTAGCGTCTCAATGCTGGAGGTCTTGGGCAACAAGTCAGTGACGTCACAGTGTCGTCGGCCCTGGAGCACTATATAAGGCTCGGTTTGGGGCATCAAGCATCCATTTCCTCCACTTTTCTAAAGGCTCTTTGAACCATTTTGAGGGTCGGGTTGAGAGGGAGTGAGAGGAGCACGAAATTATTGTTGTTGAGCATTTTTTTGAGCGATCGGGAGCTTGTTTCGCGGTGGATCCAAGGCGTAAGCAAGGGGTTCATCGACGGTTTAGTTCCTATCCTCTTTATTTGTTCATTTATTGCTTTATACCATGTATAGACGGAAAATTTTGATACTTATAGCAATCATGTATAGCTAAAATCCCAACTTACGGGTCTTGAATGAAGGAATAGAGTTTTTTAAATGTTATTCTAATTGCCTATTTTTGTGTCCAATTTACTGATTATTTGTGTGGGAGTTCTTAATGCTCTGTGGATTCTGGCCAAATTTATAGTGATTATCTTAGTGGAAACTCGACAGAGAGAAACTAAGTCAGATCATAACCCACTCAACTAGACTTAATTGCTCGTAGTGACAGCGAGATTAGTTGATTAGGCTTAGAGATCGATAATGAATCAGGACTCATTAATTAACTCATTTAATAGCGCTAAGGACACTTATGTTGTTAAAATGAGTTAATTATAATTAGGGGAACCGACAGGAGAACCTATGTGATTAACGAAGATTCTAGATCTATAATTAGTCGGACACAATATTAAGTAATTAGAATAACTAATTAAACTGTATTTTGGATTTCAAGACCCCGCCTCTTATAGAACTCAATCTACCTATTTCGCTATTAATCTGCTTGATCATTATTGCTTTGTTCTCTTGTTTAATTTTTCAATTCCATCTTTCATTCATGATGAGTTTCCTAGATAATAGGCAGCCTAAGTATTTTTAGTGTTTAGAATTTTTGCCTTGTCTAAGTTCACTTCTCCCTGTGGATACGATATTCGGTATACTTGTCGTCTCTTTATTACTTGCGGCCCGTGCATTTTGCGGTCTTCAAGAACCAGATTGTAAGTTAAGTCCGACTCCTATTCAGCTCCGCTGTAGGTTCCTTTAGAAGATTAAGCCAACTAGACATCTATTTCTAAGGCTAGTTGAAACTTAGATAAACAATACTCACGACTCTTAAAACCCTGGTGGTTCTAGTCCTATTTCTTGGATGCAAGAAGTCAAAGTCCTATTTCTACGATCTTTTGCACTATTATTTTGTGAACCCGCACCTTTAACTCCAACCTTTCGGCCATCAACTAAATGCAAACTATGCTAACCTAAGTGATCAGTTTAAGCTAACATTTAAACCTTAATTTCAACAAAAACAAACAATGCTAGAGGGAGAAAAGTTGCTTTTGCATAGGCAGGGCTTTCTTCTATTCAAGGAATCCACATATTTGAACCCCTAAATAGAAGCTTAGCTCATGATTGAAAATAAATTGCAAAACATAAAGAAAAGCAAACTACATGGAGAAAAAATAACTGAAATTAATATTAAAGAATGAGCTGAGTACAAAAGATTAACTTACAACTGAAAGTAAATGAGAAGCAAATACAAAATGTTGGAAATTAAAGAGTGCAAAACAGAAAATAAAGACAATACTCTACTAAGGATCTTTCTCTCTCTATCTAGCTAGCTCTTGCCCTTTTTCAAGGAGAGACAAGTCTTTCTCTTCTTCTTCTTTCGAATAAAAGAGCCGACAGAGACTGGGGGATCCGAAACTCAGAGTTGTTACAAGGTGAGAAAAGAGAAACTAAAAATAAATCATAAGGACGAAAACTCCAAGCACCGAGCTCTCTTTGATTCTTGCACCTTGGTCCCCTTTTATAGACCTTGGAAGATAAGATTGGCTGCTGAGACCAGTGTGAGCAGGCCTTGAAAGGTAAGAATCCACGATCCTCGGAGATTTGATGCCGGATTGGAGATTTTCGGATGATTCTGTGAAGATCCTGCGAATCTCGGTATTCTGTCCGAAAGTCCAGTTGCAATCGCTTCTTGGGCGCATTTTCCACTGTGTTCTGCTTCAAAAATTTTGTCTTCTGCATGGGACTTCTTTCCTTATATGGCTTTACGGGCGCATCTTGATCACATTCCTCACATCCTCAGGTCCATATGCAGGCGCAATATTTTTGCTTCACCTTCTATTGCTCTGCTAACCTTTATTTCCTCTTGCGGGTGCATCTTCCTCGCAAAGAATTCTACACAAAAACATTACTTGTATAATTTTACAAAAATAATCTCTTTTTGTACAAATTAAGCTTAAATTATATAATTCTAAGATTTTCTTCATGATTCTATAACTTTTGCTAAAATGACTTAAAATGATAAGATTTTAGACGCAAAGTTCTTGCTTTCCAAGCAATTACCTAAGCTTTTAAGGCTAAATAACTCACATAAATAAGTGTTATCACCATCTCCCCTAGGATCATCAACATATTGTTCGATCTGCGAGATGCACCTATAGTCGAAGGGAATGGTCTGCTGAATTCTTAAGAGAAGGACTTCTTACGTGAAGTCCTAGAGACAGTATCCCGGACTGGCACAAGATGGGAAGGCAGAGGCACCATAAGGATTCTCCGATCGTAGTGGCTCAATCTAGAGGCCAGTGCATGGATGCCCTAGATAAAGAATCACATCATGCCCACAACACATGA

mRNA sequence

ATGTTGGGTCATTTTGAGGACTCCAAGACCTTTAAAGAAGAAGAGTTAGGCCAAAAAGTGAAGGAGAAGCCCAAAAATCAGCCAAAATCTGAATCTGGAATTTCCCAACCGAAGGACAGCATCGAGACGCTGTCTCTTAGCGTCTCAATGCTGGAGGTCTTGGGCAACAATTCACTTCTCCCTGTGGATACGATATTCGGTATACTTGTCGTCTCTTTATTACTTGCGGCCCGTGCATTTTGCGGTCTTCAAGAACCAGATTGTAAGTTAAGTCCGACTCCTATTCAGCTCCGCTATCCTGCGAATCTCGGTATTCTGTCCGAAAGTCCAGTTGCAATCGCTTCTTGGGCGCATTTTCCACTGTGTTCTGCTTCAAAAATTTTGTCTTCTGCATGGGACTTCTTTCCTTATATGGCTTTACGGGCGCATCTTGATCACATTCCTCACATCCTCAGTCCTAGAGACAGTATCCCGGACTGGCACAAGATGGGAAGGCAGAGGCACCATAAGGATTCTCCGATCGTAGTGGCTCAATCTAGAGGCCAGTGCATGGATGCCCTAGATAAAGAATCACATCATGCCCACAACACATGA

Coding sequence (CDS)

ATGTTGGGTCATTTTGAGGACTCCAAGACCTTTAAAGAAGAAGAGTTAGGCCAAAAAGTGAAGGAGAAGCCCAAAAATCAGCCAAAATCTGAATCTGGAATTTCCCAACCGAAGGACAGCATCGAGACGCTGTCTCTTAGCGTCTCAATGCTGGAGGTCTTGGGCAACAATTCACTTCTCCCTGTGGATACGATATTCGGTATACTTGTCGTCTCTTTATTACTTGCGGCCCGTGCATTTTGCGGTCTTCAAGAACCAGATTGTAAGTTAAGTCCGACTCCTATTCAGCTCCGCTATCCTGCGAATCTCGGTATTCTGTCCGAAAGTCCAGTTGCAATCGCTTCTTGGGCGCATTTTCCACTGTGTTCTGCTTCAAAAATTTTGTCTTCTGCATGGGACTTCTTTCCTTATATGGCTTTACGGGCGCATCTTGATCACATTCCTCACATCCTCAGTCCTAGAGACAGTATCCCGGACTGGCACAAGATGGGAAGGCAGAGGCACCATAAGGATTCTCCGATCGTAGTGGCTCAATCTAGAGGCCAGTGCATGGATGCCCTAGATAAAGAATCACATCATGCCCACAACACATGA

Protein sequence

MLGHFEDSKTFKEEELGQKVKEKPKNQPKSESGISQPKDSIETLSLSVSMLEVLGNNSLLPVDTIFGILVVSLLLAARAFCGLQEPDCKLSPTPIQLRYPANLGILSESPVAIASWAHFPLCSASKILSSAWDFFPYMALRAHLDHIPHILSPRDSIPDWHKMGRQRHHKDSPIVVAQSRGQCMDALDKESHHAHNT

Homology

The following BLAST results are available for this feature:

BLAST of Spg034856.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg034856.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg034856.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg034856.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg034856	Spg034856	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg034856.1-cds	Spg034856.1-cds-scaffold3:24113715..24113853	CDS
Spg034856.1-cds	Spg034856.1-cds-scaffold3:24114263..24114422	CDS
Spg034856.1-cds	Spg034856.1-cds-scaffold3:24115318..24115442	CDS
Spg034856.1-cds	Spg034856.1-cds-scaffold3:24116373..24116542	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg034856.1	Spg034856.1-protein	polypeptide