Spg034805.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg034805.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	scaffold3: 24561187 .. 24564312 (-)
Sequence length	1287
RNA-Seq Expression	Spg034805.1
Synteny	Spg034805.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTCACCTACCTAGGATTTAATATCCTACATGTTTCCTGGCAACCAAATGTAGTCAGGTCAGATGGTTGTCCCGTGAGATTAGTCGAAGTGCACGCAAGCTGACTCGAACACTCAAATATAAAAATAAAATAACTATTATGTTGTAAGCTTGATAGATTTCTCTTCTCTAAAGGTTAGGGGGATCAGTTCCCTGAAGCTAGGCAATCAGTTGGCCCTAGAATTATCTCCGATCATTGGTCCCTTATTCTAACTTTAGGCAAGCTGCAATGGGGCTCGTACCCCTTCAGATTTGAAAATATGTGGCTTTCTCGTCCTTCCTTCAAGTCTTCTTTTGTCTCTTGGTGGAACTCGAGTGTTGACGGGGCTTGGGAAGGGTTTCGATTCCTTCGGAAGCTTAAATCCTTTAAAGAGGCTTTGAAGAAGTGGAACCTTTCGGTTTTTGGTATAACTAAGAGGAAAAAGGAGGAGGTAGTAGGTAGGATGAAGGTCATTGATGCGTTAGAAGTCCAAGGAGGTTTGACTTCGGAGTTGAGGAGAGAGCGTGATTTCTCTTAGGGTGGAGCTTGAAGCCTTGATTCGTAGTGAGGACATTAGCTGGAGGCAAAAGGCTAAAATGAGGTGGGTTAGAGAGGGGGATGCCAATACTACCTTCTTCCAGAATTATGCTAGGGGTAGGAGAAGTAAGAACCGTATTGATCTCTTGATTAAGGGCAATGGTGAGGTGGTGAGGAAAGATCCTAAGTTAGAAGAAGAGATCATCTCTTTCTTTTCTAAGCTATATGCCCCCCTCCGGTCTCTAGGCCTTTTGTGGAGCGTTTGGGTTGGAGCCCTACCCCAAGCAAAGATAAGGAAGAGTTAGAAGCCCCAATCACGTTGGAGCAAATCCGTAAGGTAGTTTTCAACTTTGATAAAGCCAAGTCGCCTGGGCCCGATGGTTTCACTATGGCTTTTTATAAGAAAAATTGGGAGAATATTAAACCTGACCTGTGGAAGGTTTTTTGTAAATTTTATGAGAGAGGATTATCAATACGTTGATGAGCGAGACATATGTTTGCCTAGTTCCTAAAAAGAATAAAGCTTTTCAAGCTAAAGATTTTAGGCTCATCAGCCTAGTGTCTAGCTTGTACAAGATTATTGCTAAAGTTCTAGTCAGTAGACTTAGGAAAGTCCTTCCAGGAACTATCTCCTCCTCTCAAGGGGATTTCATTGCTGGGAGACAAATCCTCGACCAAGTTTTGATTGCAAACGAAGCTATTCAGGATTATAGAAAGAGAAAAGGAGTGATTTTCAAGATTGACTTTGAGAAAGCCTTTGACCATGTTGATTGGGATTTCCTTGATAAAATCTTGGAGAGGAAAGGGTTTGGTTATAAGTGGAGAGCTTGGATTTGGAATTGCATCAGATCAACTAATTTCTCCATTTTGATCAACGGGAAGTCGAAAGGCAAGATCTTTGCTTCGGGAGACCTTAAGCAAGGGGATCCTCTGTCCCCCTCCCTATTCATTCTAGTGGTGGATGTTTTGAGCAGGCTAGAGATGATAGAGGGCTTCAAGGTGGGATCGAATAGCATCCACTTATCTCATCTTCAATTTGCCGATGACACCCTCTTCTTTTGTTCGGCGAAGGAAGAGTCTTTTAGGAACTTAAACGGATTCATTTCCTTCTTTGAAGCTATCTCAGGGCTCAGGATCAATCGCCATAAAAGTTTTATTTTTGGGGTTAATTGTGAGGTCTCTAAGTTGGAGGGTTGGGTGTCTCTAGTTGGTTGTGAGGTGAATCAATTTCCTTGCTCCTATCTTGGCCTCCCTTTGGAAGGCAACCCGAAATCGTTGGTCTTTTGGAACCCGGTGGTGGAAAAAGTTCAAAAGCGACTGTCCTCCTAGAAAAAAGCTTACTTTTTTGAAGGGGGTAGACTAACTTTGATTTAGTAAGAGTGGGATCCCTCTCTACTTTCTTTCCTTCTTTAGATTGCCTGTGTCTGTGTGTAAATCTTTGGAGAGGCTTATGAGAAATTTCTCGTGGGAAGGAGTGGATGAGGGTGGAGGAGCCCACCTGATACAATGGGAGGTGGTTTCTAAGCCTAATGAGGCTTCACAACGAGGCCCTTTTGGGGAAATGGTTGTAGCGCTCCTTTAATGAGCCAAACGCCCTGTGGTGGAAGGTTATTGCGAGTTTGTATGGTCCGCACCCTTTCGAGTGGATCTCTAGTTGTAGGCTGAAAGGATCTAGTAAAAACCTTTAGTCTGATATTGCTTTGGGTTTTCCTCTCTTCATTCAGTTTGTTCATTGTTCTATTGGGGATGGTTCCAATACCTATTTCTGGGAGGATTCTTGGGTTGGGGATAACCTTTGAGTGCTTTATTCCCTCGTCTTTATCACCTATCTGAGAATAGGTTGCATTCGGTAGCCCCAATCTTTCCCAATTCTGATTCCTCCTCTCCTGCCCTTGGTTTTCGTCATTCTCTCACTGATCGAGAGGGGGTCGTTATTCTTCTCTCCATTTTGGTTGACCAGTCGATTCATCATGGGAGAAGGGACTCTCGATTCTGGACCCTGAAGCCTTCAAATGGCTTCTCTTGTGCTTCTTTTTTCCGTTCTCTTTCTACGTCTCTCCCTCCTCTAGAAGCCTCCATTTTCTCCTCGTTATGGAAGGTCGAAATTCCCAAGAAAGTGAAGTTCTCTGTCTGGGAAGTTTTACATGGTTGGGTGAATACTCAGGATCGGATCCAAAAGTTCCCCTCCTTTGTGTTGCGGCTGCCGTGGTGTGTCCTCTGTAGGAGTCAGGACGAGGACCTTGATCATTTGCTTTGGGATTGTCCGTTTGTCTGTTCTGGGTTGCTTCGGCTCGTAACAGTGACTGCTTCTCTATGTTTGAGGAAATCCTATGGCATCCTCCTTTTTCGTGACAAAGGGAGAGTTCTTTGGCAAGTGTGTTTCTTTGCAATTTTGTGGGGTATTTGGCTTGAGAGAAATAGTAGAATTTTTAGAGGGGTGGAGAGATCCACGAGTGAGCTTTGGGAGATGATTAGATTTAACTCGTCTTTGTGGGTGTTTGTTTCTAAGCCTTTTTGTAATTATCAGCTCGGTCTTATTATTTTGGATTGGGACCCATTCCTGTAG

mRNA sequence

ATGATGGTCACCTACCTAGGATTTAATATCCTACATGTTTCCTGGCAACCAAATGTAGTCAGGTCAGATGGTTGTCCCGGGGATCAGTTCCCTGAAGCTAGGCAATCAGTTGGCCCTAGAATTATCTCCGATCATTGGTCCCTTATTCTAACTTTAGGCAAGCTGCAATGGGGCTCGTACCCCTTCAGATTTGAAAATATGTGGCTTTCTCGTCCTTCCTTCAAGTCTTCTTTTGTCTCTTGGTGGAACTCGAGTGTTGACGGGGCTTGGGAAGGGTTTCGATTCCTTCGGAAGCTTAAATCCTTTAAAGAGGCTTTGAAGAAGGTGGAGCTTGAAGCCTTGATTCGTAGTGAGGACATTAGCTGGAGGCAAAAGGCTAAAATGAGGTGGGTTAGAGAGGGGGATGCCAATACTACCTTCTTCCAGAATTATGCTAGGGGTAGGAGAAGTAAGAACCGTATTGATCTCTTGATTAAGGGCAATGGTGAGGTGGTGAGGAAAGATCCTAAGTTAGAAGAAGAGATCATCTCTTTCTTTTCTAAGCTATATGCCCCCCTCCGGTTGCATTCGGTAGCCCCAATCTTTCCCAATTCTGATTCCTCCTCTCCTGCCCTTGGTTTTCGTCATTCTCTCACTGATCGAGAGGGGGTCGTTATTCTTCTCTCCATTTTGGTTGACCAGTCGATTCATCATGGGAGAAGGGACTCTCGATTCTGGACCCTGAAGCCTTCAAATGGCTTCTCTTGTGCTTCTTTTTTCCGTTCTCTTTCTACGTCTCTCCCTCCTCTAGAAGCCTCCATTTTCTCCTCGTTATGGAAGGTCGAAATTCCCAAGAAAGTGAAGTTCTCTGTCTGGGAAGTTTTACATGGTTGGGTGAATACTCAGGATCGGATCCAAAAGTTCCCCTCCTTTGTGTTGCGGCTGCCGTGGTGTGTCCTCTGTAGGAGTCAGGACGAGGACCTTGATCATTTGCTTTGGGATTGTCCGTTTGTCTGTTCTGGGTTGCTTCGGCTCGTAACAGTGACTGCTTCTCTATGTTTGAGGAAATCCTATGGCATCCTCCTTTTTCGTGACAAAGGGAGAGTTCTTTGGCAAGTGTGTTTCTTTGCAATTTTGTGGGGTATTTGGCTTGAGAGAAATAGTAGAATTTTTAGAGGGGTGGAGAGATCCACGAGTGAGCTTTGGGAGATGATTAGATTTAACTCGTCTTTGTGGGTGTTTGTTTCTAAGCCTTTTTGTAATTATCAGCTCGGTCTTATTATTTTGGATTGGGACCCATTCCTGTAG

Coding sequence (CDS)

ATGATGGTCACCTACCTAGGATTTAATATCCTACATGTTTCCTGGCAACCAAATGTAGTCAGGTCAGATGGTTGTCCCGGGGATCAGTTCCCTGAAGCTAGGCAATCAGTTGGCCCTAGAATTATCTCCGATCATTGGTCCCTTATTCTAACTTTAGGCAAGCTGCAATGGGGCTCGTACCCCTTCAGATTTGAAAATATGTGGCTTTCTCGTCCTTCCTTCAAGTCTTCTTTTGTCTCTTGGTGGAACTCGAGTGTTGACGGGGCTTGGGAAGGGTTTCGATTCCTTCGGAAGCTTAAATCCTTTAAAGAGGCTTTGAAGAAGGTGGAGCTTGAAGCCTTGATTCGTAGTGAGGACATTAGCTGGAGGCAAAAGGCTAAAATGAGGTGGGTTAGAGAGGGGGATGCCAATACTACCTTCTTCCAGAATTATGCTAGGGGTAGGAGAAGTAAGAACCGTATTGATCTCTTGATTAAGGGCAATGGTGAGGTGGTGAGGAAAGATCCTAAGTTAGAAGAAGAGATCATCTCTTTCTTTTCTAAGCTATATGCCCCCCTCCGGTTGCATTCGGTAGCCCCAATCTTTCCCAATTCTGATTCCTCCTCTCCTGCCCTTGGTTTTCGTCATTCTCTCACTGATCGAGAGGGGGTCGTTATTCTTCTCTCCATTTTGGTTGACCAGTCGATTCATCATGGGAGAAGGGACTCTCGATTCTGGACCCTGAAGCCTTCAAATGGCTTCTCTTGTGCTTCTTTTTTCCGTTCTCTTTCTACGTCTCTCCCTCCTCTAGAAGCCTCCATTTTCTCCTCGTTATGGAAGGTCGAAATTCCCAAGAAAGTGAAGTTCTCTGTCTGGGAAGTTTTACATGGTTGGGTGAATACTCAGGATCGGATCCAAAAGTTCCCCTCCTTTGTGTTGCGGCTGCCGTGGTGTGTCCTCTGTAGGAGTCAGGACGAGGACCTTGATCATTTGCTTTGGGATTGTCCGTTTGTCTGTTCTGGGTTGCTTCGGCTCGTAACAGTGACTGCTTCTCTATGTTTGAGGAAATCCTATGGCATCCTCCTTTTTCGTGACAAAGGGAGAGTTCTTTGGCAAGTGTGTTTCTTTGCAATTTTGTGGGGTATTTGGCTTGAGAGAAATAGTAGAATTTTTAGAGGGGTGGAGAGATCCACGAGTGAGCTTTGGGAGATGATTAGATTTAACTCGTCTTTGTGGGTGTTTGTTTCTAAGCCTTTTTGTAATTATCAGCTCGGTCTTATTATTTTGGATTGGGACCCATTCCTGTAG

Protein sequence

MMVTYLGFNILHVSWQPNVVRSDGCPGDQFPEARQSVGPRIISDHWSLILTLGKLQWGSYPFRFENMWLSRPSFKSSFVSWWNSSVDGAWEGFRFLRKLKSFKEALKKVELEALIRSEDISWRQKAKMRWVREGDANTTFFQNYARGRRSKNRIDLLIKGNGEVVRKDPKLEEEIISFFSKLYAPLRLHSVAPIFPNSDSSSPALGFRHSLTDREGVVILLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFFRSLSTSLPPLEASIFSSLWKVEIPKKVKFSVWEVLHGWVNTQDRIQKFPSFVLRLPWCVLCRSQDEDLDHLLWDCPFVCSGLLRLVTVTASLCLRKSYGILLFRDKGRVLWQVCFFAILWGIWLERNSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILDWDPFL

Homology

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BLAST of Spg034805.1 vs. NCBI nr
Match: RVX17758.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-33
Identity = 97/285 (34.04%), Postives = 142/285 (49.82%), Query Frame = 0


Query: 157 LIKGNGEVVRKDPKL---EEEIISFFSKLYAPLRLH--SVAPIFPNSDSSSPALGFRHSL 216
           L+ GNGE +R    L    + + S F+ LY  + +   +V+ +  NS   S    FR +L
Sbjct: 187 LVVGNGERIRFWEDLWWGNQTLCSQFADLYRVISMKNLTVSNVLGNSLPLSWNFNFRRNL 246

Query: 217 TDREGVVI--LLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFFRSLSTSLPPLEASIFS 276
           TD E  ++  L+S L    +     DSR W+L  S+ FS  SFF +LS    PL      
Sbjct: 247 TDSEIDLLQRLMSSLNSVLLSPSSSDSRVWSLSSSSSFSVKSFFYALSKVSNPLMFLPAK 306

Query: 277 SLWKVEIPKKVKFSVWEVLHGWVNTQDRIQ-KFPSFVLRLPWCVLCRSQDEDLDHLLWDC 336
            LW  ++P KVK   W V HG VNT D++Q + P   L   WC+LC+   E +DHL   C
Sbjct: 307 FLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALYPQWCILCKGHGESIDHLFLHC 366

Query: 337 PFVCSGLLRLVTVTASLCL--RKSYGILLFRDK-------GRVLWQVCFFAILWGIWLER 396
           P       RL  +   + +  R    +L+   K       G+ LWQ+    ++W +W ER
Sbjct: 367 PITIGLWHRLFNLVGVIWVPPRSLEDMLVISFKGLGNSLRGKTLWQIACLTLIWMVWHER 426

Query: 397 NSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILDW 425
           N+RIF    R+   +W++IRF SSLW   +K F    L ++ L+W
Sbjct: 427 NNRIFEDKGRTEEMVWDLIRFYSSLWASCTKAFRGVPLSILQLNW 471

[Close]

BLAST of Spg034805.1 vs. NCBI nr
Match: RVW19678.1 (Structural maintenance of chromosomes protein 3, partial [Vitis vinifera])

HSP 1 Score: 152.9 bits (385), Expect = 6.2e-33
Identity = 110/364 (30.22%), Postives = 171/364 (46.98%), Query Frame = 0


Query: 83   NSSVDGAWEGFRFLRKLKSFKEALKKVELEALIRSEDISWRQKAKMRWVRE--GDANTTF 142
            NS++ G W  +RF R+    +  L    + ++  +    W     +RW       A    
Sbjct: 663  NSALLGKWL-WRFPRE----RSGLWHKVIASIYGTHPNGWDANMVVRWSHRCPWKAIAQV 722

Query: 143  FQNYARGRRSKNRIDLLIKGNGEVVRKDPKL---EEEIISFFSKLYAPLRLH--SVAPIF 202
            FQ ++   R       L+ GNGE +R    L    + + + F++LY  + +   +V+ + 
Sbjct: 723  FQEFSPFVR-------LVVGNGERIRFWEDLWWGNQTLCAQFAELYRVISVRNLTVSNVL 782

Query: 203  PNSDSSSPALGFRHSLTDREGVVI--LLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFF 262
             NS   S    FR +LTD E  ++  L+S L    +     DSR W+L  S  FS  SFF
Sbjct: 783  GNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFF 842

Query: 263  RSLSTSLPPLEASIFSSLWKVEIPKKVKFSVWEVLHGWVNTQDRIQ-KFPSFVLRLPWCV 322
             +LS    PL       LW  ++P KVK   W V HG VNT D++Q + P   L   WC+
Sbjct: 843  YALSRDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCI 902

Query: 323  LCRSQDEDLDHLLWDCPFVCSGLLRLVTVTASLCL--RKSYGILLFRDK-------GRVL 382
            LC+   E +DHL   CP       RL  +   + +  R    +L+   K       G++L
Sbjct: 903  LCKGNGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGKIL 962

Query: 383  WQVCFFAILWGIWLERNSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILD 428
            WQ+    ++W +W ERN+RIF    R+   +W++IRF SSLW   ++ F    L ++ ++
Sbjct: 963  WQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQIN 1014

[Close]

BLAST of Spg034805.1 vs. NCBI nr
Match: RVW19678.1 (Structural maintenance of chromosomes protein 3, partial [Vitis vinifera])

HSP 1 Score: 129.4 bits (324), Expect = 7.3e-26
Identity = 69/199 (34.67%), Postives = 90/199 (45.23%), Query Frame = 0


Query: 30  FPEARQSVGPRIISDHWSLILTLGKLQWGSYPFRFENMWLSRPSFKSSFVSWWNSSVDGA 89
           F +  Q   PR  SDH  + L      WG  PFRFENMWL  P FK  F  WW       
Sbjct: 59  FSQNIQEALPRWTSDHSPICLETNPFMWGPTPFRFENMWLLHPEFKEKFRDWWQECTVEG 118

Query: 90  WEGFRFLRKLKSFKEALK------------------------------------------ 149
           WEG +F+RKLK  K  LK                                          
Sbjct: 119 WEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVSERI 178

Query: 150 --KVELEALIRSEDISWRQKAKMRWVREGDANTTFFQNYARGRRSKNRIDLLIKGNGEVV 185
             + ELE L+  E++ WRQK++++W++EGD N+ FF   A GRRS+  I  LI   GE +
Sbjct: 179 LRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERGETL 238

HSP 2 Score: 152.5 bits (384), Expect = 8.1e-33
Identity = 94/285 (32.98%), Postives = 142/285 (49.82%), Query Frame = 0


Query: 157 LIKGNGEVVRKDPKL---EEEIISFFSKLYAPLRLH--SVAPIFPNSDSSSPALGFRHSL 216
           L+ GNGE +R    L    + + + F++LY  + +   +V+ +  NS   S    FR +L
Sbjct: 106 LVVGNGERIRFWEDLWWGNQTLCAQFAELYRVISVRNLTVSNVLGNSFPLSWNFNFRRNL 165

Query: 217 TDREGVVI--LLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFFRSLSTSLPPLEASIFS 276
           TD E   +  L+S L    +     DSR W+L  S  FS  SFF +LS    PL      
Sbjct: 166 TDSEIDFLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSKDSNPLMFLPAK 225

Query: 277 SLWKVEIPKKVKFSVWEVLHGWVNTQDRIQ-KFPSFVLRLPWCVLCRSQDEDLDHLLWDC 336
            LW  ++P KVK   W V HG VNT D++Q + P   L   WC+LC+   E +DHL   C
Sbjct: 226 FLWSSKVPSKVKTLAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDHLFLHC 285

Query: 337 PFVCSGLLRLVTVTASLCL--RKSYGILLFRDK-------GRVLWQVCFFAILWGIWLER 396
           P       RL  +   + +  R    +L+   K       G++LWQ+    ++W +W ER
Sbjct: 286 PVTIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGKILWQIACLTLIWMVWQER 345

Query: 397 NSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILDW 425
           N+RIF    R+   +W++IRF SSLW   ++ F    L ++ ++W
Sbjct: 346 NNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGIPLSILQINW 390

[Close]

BLAST of Spg034805.1 vs. NCBI nr
Match: CAN62833.1 (hypothetical protein VITISV_012130 [Vitis vinifera])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-32
Identity = 109/361 (30.19%), Postives = 170/361 (47.09%), Query Frame = 0


Query: 83  NSSVDGAWEGFRFLRKLKSFKEALKKVELEALIRSEDISWRQKAKMRWVRE--GDANTTF 142
           NS++ G W  +RF R+    +  L    + ++  +    W     +RW       A    
Sbjct: 398 NSALLGKWL-WRFPRE----RSGLWHKVIASIYGTHPNGWDANMVVRWSHRCPWKAIAQV 457

Query: 143 FQNYARGRRSKNRIDLLIKGNGEVVRKDPKL---EEEIISFFSKLYAPLRLH--SVAPIF 202
           FQ ++   R       L+ GNGE +R    L    + + + F++LY  + +   +V+ + 
Sbjct: 458 FQEFSPFVR-------LVVGNGERIRFWEDLWWGNQTLCAQFAELYRVISVRNLTVSNVL 517

Query: 203 PNSDSSSPALGFRHSLTDREGVVI--LLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFF 262
            NS   S    FR +LTD E  ++  L+S L    +     DSR W+L  S  FS  SFF
Sbjct: 518 GNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFF 577

Query: 263 RSLSTSLPPLEASIFSSLWKVEIPKKVKFSVWEVLHGWVNTQDRIQ-KFPSFVLRLPWCV 322
            +LS    PL       LW  ++P KVK   W V HG VNT D++Q + P   L   WC+
Sbjct: 578 YALSRDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCI 637

Query: 323 LCRSQDEDLDHLLWDCPFVCSGLLRLVTVTASLCL--RKSYGILLFRDK-------GRVL 382
           LC+   E +DHL   CP       RL  +   + +  R    +L+   K       G++L
Sbjct: 638 LCKGNGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGKIL 697

Query: 383 WQVCFFAILWGIWLERNSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILD 425
           WQ+    ++W +W ERN+RIF    R+   +W++IRF SSLW   ++ F    L ++ ++
Sbjct: 698 WQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQIN 746

[Close]

BLAST of Spg034805.1 vs. NCBI nr
Match: RVW76061.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-32
Identity = 72/165 (43.64%), Postives = 98/165 (59.39%), Query Frame = 0


Query: 27  GDQFPEARQSVGPRIISDHWSLILTLGKLQWGSYPFRFENMWLSRPSFKSSFVSWWNSSV 86
           G  FP+  Q   PR  SDHW ++L     +WG  PFRFENMWL  PSFK +F +WW    
Sbjct: 507 GQLFPQGLQEALPRRTSDHWPIVLDANPFKWGPIPFRFENMWLQHPSFKENFRNWWRGFQ 566

Query: 87  DGAWEGFRFLRK-------LKSFKEALKKVELEALIRSEDISWRQKAKMRWVREGDANTT 146
              WE  +F+R+       LK + ++LKK ELE LI  E+I WRQKA+++WV+EGD N+ 
Sbjct: 567 GNGWERHKFMRRLQFVKTNLKEWNKSLKKRELEELILREEIHWRQKARVKWVKEGDYNSK 626

Query: 147 FFQNYARGRRSKNRIDLLIKGNGEVVRKDPKLEEEIISFFSKLYA 185
           FF   A  RR++  I +L    G V+     + +EI+ +F KLYA
Sbjct: 627 FFHKVANDRRNRKFIKVLENERGLVLNNAESITKEILLYFEKLYA 671

[Close]

BLAST of Spg034805.1 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-07
Identity = 46/162 (28.40%), Postives = 70/162 (43.21%), Query Frame = 0


Query: 232 GRRDSRFWTLKPSNGFSCASFFRSLST-SLP-PLEASIFSSLWKVEIPKKVKFSVWEVLH 291
           G RD   W       FS  S +  L+   +P P  AS F+ LWKV +P++VK  +W V +
Sbjct: 250 GARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGN 309

Query: 292 GWVNTQDRIQKFPSFVLRLPWCVLCRSQDEDLDHLLWDCPFVCSGLLRLVTVTASL-CLR 351
             V T++  ++    +     C +C+   E + H+L DCP      +R+V          
Sbjct: 310 QAVMTEE--ERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFS 369

Query: 352 KSYGILLFRDKG------RVLWQVCFFAILWGIWLERNSRIF 385
           KS    L+ + G       + W   F  I+W  W  R   IF
Sbjct: 370 KSLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIF 409

[Close]

BLAST of Spg034805.1 vs. ExPASy TrEMBL
Match: A0A438K969 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_73 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.9e-34
Identity = 97/285 (34.04%), Postives = 142/285 (49.82%), Query Frame = 0


Query: 157 LIKGNGEVVRKDPKL---EEEIISFFSKLYAPLRLH--SVAPIFPNSDSSSPALGFRHSL 216
           L+ GNGE +R    L    + + S F+ LY  + +   +V+ +  NS   S    FR +L
Sbjct: 187 LVVGNGERIRFWEDLWWGNQTLCSQFADLYRVISMKNLTVSNVLGNSLPLSWNFNFRRNL 246

Query: 217 TDREGVVI--LLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFFRSLSTSLPPLEASIFS 276
           TD E  ++  L+S L    +     DSR W+L  S+ FS  SFF +LS    PL      
Sbjct: 247 TDSEIDLLQRLMSSLNSVLLSPSSSDSRVWSLSSSSSFSVKSFFYALSKVSNPLMFLPAK 306

Query: 277 SLWKVEIPKKVKFSVWEVLHGWVNTQDRIQ-KFPSFVLRLPWCVLCRSQDEDLDHLLWDC 336
            LW  ++P KVK   W V HG VNT D++Q + P   L   WC+LC+   E +DHL   C
Sbjct: 307 FLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALYPQWCILCKGHGESIDHLFLHC 366

Query: 337 PFVCSGLLRLVTVTASLCL--RKSYGILLFRDK-------GRVLWQVCFFAILWGIWLER 396
           P       RL  +   + +  R    +L+   K       G+ LWQ+    ++W +W ER
Sbjct: 367 PITIGLWHRLFNLVGVIWVPPRSLEDMLVISFKGLGNSLRGKTLWQIACLTLIWMVWHER 426

Query: 397 NSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILDW 425
           N+RIF    R+   +W++IRF SSLW   +K F    L ++ L+W
Sbjct: 427 NNRIFEDKGRTEEMVWDLIRFYSSLWASCTKAFRGVPLSILQLNW 471

[Close]

BLAST of Spg034805.1 vs. ExPASy TrEMBL
Match: A0A438C911 (Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=29760 GN=SMC3_7 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.0e-33
Identity = 110/364 (30.22%), Postives = 171/364 (46.98%), Query Frame = 0


Query: 83   NSSVDGAWEGFRFLRKLKSFKEALKKVELEALIRSEDISWRQKAKMRWVRE--GDANTTF 142
            NS++ G W  +RF R+    +  L    + ++  +    W     +RW       A    
Sbjct: 663  NSALLGKWL-WRFPRE----RSGLWHKVIASIYGTHPNGWDANMVVRWSHRCPWKAIAQV 722

Query: 143  FQNYARGRRSKNRIDLLIKGNGEVVRKDPKL---EEEIISFFSKLYAPLRLH--SVAPIF 202
            FQ ++   R       L+ GNGE +R    L    + + + F++LY  + +   +V+ + 
Sbjct: 723  FQEFSPFVR-------LVVGNGERIRFWEDLWWGNQTLCAQFAELYRVISVRNLTVSNVL 782

Query: 203  PNSDSSSPALGFRHSLTDREGVVI--LLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFF 262
             NS   S    FR +LTD E  ++  L+S L    +     DSR W+L  S  FS  SFF
Sbjct: 783  GNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFF 842

Query: 263  RSLSTSLPPLEASIFSSLWKVEIPKKVKFSVWEVLHGWVNTQDRIQ-KFPSFVLRLPWCV 322
             +LS    PL       LW  ++P KVK   W V HG VNT D++Q + P   L   WC+
Sbjct: 843  YALSRDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCI 902

Query: 323  LCRSQDEDLDHLLWDCPFVCSGLLRLVTVTASLCL--RKSYGILLFRDK-------GRVL 382
            LC+   E +DHL   CP       RL  +   + +  R    +L+   K       G++L
Sbjct: 903  LCKGNGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGKIL 962

Query: 383  WQVCFFAILWGIWLERNSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILD 428
            WQ+    ++W +W ERN+RIF    R+   +W++IRF SSLW   ++ F    L ++ ++
Sbjct: 963  WQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQIN 1014

[Close]

BLAST of Spg034805.1 vs. ExPASy TrEMBL
Match: A0A438C911 (Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=29760 GN=SMC3_7 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-26
Identity = 69/199 (34.67%), Postives = 90/199 (45.23%), Query Frame = 0


Query: 30  FPEARQSVGPRIISDHWSLILTLGKLQWGSYPFRFENMWLSRPSFKSSFVSWWNSSVDGA 89
           F +  Q   PR  SDH  + L      WG  PFRFENMWL  P FK  F  WW       
Sbjct: 59  FSQNIQEALPRWTSDHSPICLETNPFMWGPTPFRFENMWLLHPEFKEKFRDWWQECTVEG 118

Query: 90  WEGFRFLRKLKSFKEALK------------------------------------------ 149
           WEG +F+RKLK  K  LK                                          
Sbjct: 119 WEGHKFMRKLKFIKSKLKEWNTRVFGDLRERKKHILTDLGRIDRIEQEGNLNLELVSERI 178

Query: 150 --KVELEALIRSEDISWRQKAKMRWVREGDANTTFFQNYARGRRSKNRIDLLIKGNGEVV 185
             + ELE L+  E++ WRQK++++W++EGD N+ FF   A GRRS+  I  LI   GE +
Sbjct: 179 LRRKELEDLLLKEEVQWRQKSRVKWIKEGDCNSKFFHRVATGRRSRKFIKSLISERGETL 238

HSP 2 Score: 152.5 bits (384), Expect = 3.9e-33
Identity = 94/285 (32.98%), Postives = 142/285 (49.82%), Query Frame = 0


Query: 157 LIKGNGEVVRKDPKL---EEEIISFFSKLYAPLRLH--SVAPIFPNSDSSSPALGFRHSL 216
           L+ GNGE +R    L    + + + F++LY  + +   +V+ +  NS   S    FR +L
Sbjct: 106 LVVGNGERIRFWEDLWWGNQTLCAQFAELYRVISVRNLTVSNVLGNSFPLSWNFNFRRNL 165

Query: 217 TDREGVVI--LLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFFRSLSTSLPPLEASIFS 276
           TD E   +  L+S L    +     DSR W+L  S  FS  SFF +LS    PL      
Sbjct: 166 TDSEIDFLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFFYALSKDSNPLMFLPAK 225

Query: 277 SLWKVEIPKKVKFSVWEVLHGWVNTQDRIQ-KFPSFVLRLPWCVLCRSQDEDLDHLLWDC 336
            LW  ++P KVK   W V HG VNT D++Q + P   L   WC+LC+   E +DHL   C
Sbjct: 226 FLWSSKVPSKVKTLAWLVAHGKVNTNDKLQLRRPYKALCPQWCILCKGNGESIDHLFLHC 285

Query: 337 PFVCSGLLRLVTVTASLCL--RKSYGILLFRDK-------GRVLWQVCFFAILWGIWLER 396
           P       RL  +   + +  R    +L+   K       G++LWQ+    ++W +W ER
Sbjct: 286 PVTIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGKILWQIACLTLIWMVWQER 345

Query: 397 NSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILDW 425
           N+RIF    R+   +W++IRF SSLW   ++ F    L ++ ++W
Sbjct: 346 NNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGIPLSILQINW 390

[Close]

BLAST of Spg034805.1 vs. ExPASy TrEMBL
Match: A0A438GV32 (Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_182 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.1e-33
Identity = 72/165 (43.64%), Postives = 98/165 (59.39%), Query Frame = 0


Query: 27  GDQFPEARQSVGPRIISDHWSLILTLGKLQWGSYPFRFENMWLSRPSFKSSFVSWWNSSV 86
           G  FP+  Q   PR  SDHW ++L     +WG  PFRFENMWL  PSFK +F +WW    
Sbjct: 507 GQLFPQGLQEALPRRTSDHWPIVLDANPFKWGPIPFRFENMWLQHPSFKENFRNWWRGFQ 566

Query: 87  DGAWEGFRFLRK-------LKSFKEALKKVELEALIRSEDISWRQKAKMRWVREGDANTT 146
              WE  +F+R+       LK + ++LKK ELE LI  E+I WRQKA+++WV+EGD N+ 
Sbjct: 567 GNGWERHKFMRRLQFVKTNLKEWNKSLKKRELEELILREEIHWRQKARVKWVKEGDYNSK 626

Query: 147 FFQNYARGRRSKNRIDLLIKGNGEVVRKDPKLEEEIISFFSKLYA 185
           FF   A  RR++  I +L    G V+     + +EI+ +F KLYA
Sbjct: 627 FFHKVANDRRNRKFIKVLENERGLVLNNAESITKEILLYFEKLYA 671

[Close]

BLAST of Spg034805.1 vs. ExPASy TrEMBL
Match: A5AUH3 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_012130 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.1e-33
Identity = 109/361 (30.19%), Postives = 170/361 (47.09%), Query Frame = 0


Query: 83  NSSVDGAWEGFRFLRKLKSFKEALKKVELEALIRSEDISWRQKAKMRWVRE--GDANTTF 142
           NS++ G W  +RF R+    +  L    + ++  +    W     +RW       A    
Sbjct: 398 NSALLGKWL-WRFPRE----RSGLWHKVIASIYGTHPNGWDANMVVRWSHRCPWKAIAQV 457

Query: 143 FQNYARGRRSKNRIDLLIKGNGEVVRKDPKL---EEEIISFFSKLYAPLRLH--SVAPIF 202
           FQ ++   R       L+ GNGE +R    L    + + + F++LY  + +   +V+ + 
Sbjct: 458 FQEFSPFVR-------LVVGNGERIRFWEDLWWGNQTLCAQFAELYRVISVRNLTVSNVL 517

Query: 203 PNSDSSSPALGFRHSLTDREGVVI--LLSILVDQSIHHGRRDSRFWTLKPSNGFSCASFF 262
            NS   S    FR +LTD E  ++  L+S L    +     DSR W+L  S  FS  SFF
Sbjct: 518 GNSFPLSWNFNFRRNLTDSEIDLLQRLMSSLHSVLLSPSSSDSRAWSLSSSGSFSVKSFF 577

Query: 263 RSLSTSLPPLEASIFSSLWKVEIPKKVKFSVWEVLHGWVNTQDRIQ-KFPSFVLRLPWCV 322
            +LS    PL       LW  ++P KVK   W V HG VNT D++Q + P   L   WC+
Sbjct: 578 YALSRDSNPLMFLPAKFLWSSKVPSKVKALAWLVAHGKVNTNDKLQLRRPYKALCPQWCI 637

Query: 323 LCRSQDEDLDHLLWDCPFVCSGLLRLVTVTASLCL--RKSYGILLFRDK-------GRVL 382
           LC+   E +DHL   CP       RL  +   + +  R    +L+   K       G++L
Sbjct: 638 LCKGNGESIDHLFLHCPITIGLWHRLFNLVGVIWVPPRSIEDMLVISFKGLGNSVRGKIL 697

Query: 383 WQVCFFAILWGIWLERNSRIFRGVERSTSELWEMIRFNSSLWVFVSKPFCNYQLGLIILD 425
           WQ+    ++W +W ERN+RIF    R+   +W++IRF SSLW   ++ F    L ++ ++
Sbjct: 698 WQIACLTLIWMVWQERNNRIFEDKGRTEEVVWDLIRFYSSLWASCTEAFRGVPLSILQIN 746

[Close]

BLAST of Spg034805.1 vs. TAIR 10
Match: AT1G43730.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-09
Identity = 56/169 (33.14%), Postives = 82/169 (48.52%), Query Frame = 0


Query: 235 DSRFWTL---KPSNGFSCASFFRSLSTSLPPLEASI--FSSLW-KVEIPKKVKFSVWEVL 294
           DS  W      PSN FS A      S +L P    +  + ++W K  +PK   F  W V 
Sbjct: 118 DSFIWKTDLHAPSNIFSTA----KTSLALHPQNHIVPWYKAVWFKNHVPKHA-FICWVVA 177

Query: 295 HGWVNTQDRIQKFPSFVLRLP-WCVLCRSQDEDLDHLLWDCPFVCSGLLRLVTVTASLC- 354
              ++T+DR++   S+ L +P  C+LC S DE   HL ++CPF C  + R  T  A+L  
Sbjct: 178 WNRLHTRDRLR---SWGLSIPAVCLLCNSHDESRAHLFFECPF-CGAVWRFFTGRANLFP 237

Query: 355 -LRKSYGILLF----RDKGRVL-WQVCFFAILWGIWLERNSRIFRGVER 390
             +  Y ++      RDK   L  ++ F A ++ IW ERN  +  GV R
Sbjct: 238 PAQLMYCLIWLLNPSRDKNTTLIIRLAFQAYVYAIWRERNLCLHTGVAR 277

[Close]

BLAST of Spg034805.1 vs. TAIR 10
Match: AT4G04650.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-08
Identity = 55/182 (30.22%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 235 DSRFWTL---KPSNGFSCASFFRSL---STSLPPLEASIFSSLWKVEIPKKVKFSVWEVL 294
           DS  W      PSN FS    + +L   S ++P  +A  F    K  +PK   F  W V 
Sbjct: 96  DSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPWHKAVWF----KNHVPKHA-FICWVVA 155

Query: 295 HGWVNTQDRIQKFPSFVLRLP-WCVLCRSQDEDLDHLLWDCPFVCSGLL-RLVTVTASL- 354
              ++T+DR+Q   ++ L +P  C+LC + D+   HL ++C F  SG++ R  T + +L 
Sbjct: 156 WNRLHTRDRLQ---NWGLSIPAECLLCNAHDDSRAHLFFECQF--SGVVWRFFTASTNLN 215

Query: 355 -------CLRKSYGILLFRDKG-RVLWQVCFFAILWGIWLERNSRIFRGVERSTSELWEM 400
                  CL  ++ +   R+K   ++ ++ F + ++ IW ERN R+  GV RST  + + 
Sbjct: 216 PPAQLMDCL--NWLLSPSREKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKD 265

[Close]

BLAST of Spg034805.1 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 2.2e-04
Identity = 43/185 (23.24%), Postives = 75/185 (40.54%), Query Frame = 0


Query: 42  ISDHWSLILTLGKLQWGSYP-FRFENMWLSRPSFKSSFVSWWNSSVDGAWEGFRFLRKLK 101
           +SDH   I+ L  L   S   FR+ +   + P+F  S    W   +      F     LK
Sbjct: 311 VSDHSPCIIILENLPKRSKKCFRYFSFLSTHPTFLVSLTVAWEEQIPVGSHMFSLGEHLK 370

Query: 102 S-------------------FKEALKKVE----------LEALIRSEDIS---------- 161
           +                    KEAL  +E           ++L R E ++          
Sbjct: 371 AAKKCCKLLNRQGFGNIQHKTKEALDSLESIQSQLLTNPSDSLFRVEHVARKKWNFFAAA 430

Query: 162 ----WRQKAKMRWVREGDANTTFFQNYARGRRSKNRIDLLIKGNGEVVRKDPKLEEEIIS 183
               +RQK++++W+++GDANT FF       ++KN I  L   +   V    +++E I++
Sbjct: 431 LESFYRQKSRIKWLQDGDANTRFFHKVILANQAKNLIKFLRMDDDVRVENVTQVKEMIVA 490

The following BLAST results are available for this feature:

BLAST of Spg034805.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX17758.1	1.6e-33	34.04	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW19678.1	6.2e-33	30.22	Structural maintenance of chromosomes protein 3, partial [Vitis vinifera]	[more]
RVW19678.1	7.3e-26	34.67	Structural maintenance of chromosomes protein 3, partial [Vitis vinifera]	[more]
CAN62833.1	1.1e-32	30.19	hypothetical protein VITISV_012130 [Vitis vinifera]	[more]
RVW76061.1	1.1e-32	43.64	putative mitochondrial protein [Vitis vinifera]	[more]

BLAST of Spg034805.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	7.9e-07	28.40	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Spg034805.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438K969	7.9e-34	34.04	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_73 PE...	[more]
A0A438C911	3.0e-33	30.22	Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=...	[more]
A0A438C911	3.6e-26	34.67	Structural maintenance of chromosomes protein 3 (Fragment) OS=Vitis vinifera OX=...	[more]
A0A438GV32	5.1e-33	43.64	Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_182 PE=4 ...	[more]
A5AUH3	5.1e-33	30.19	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of Spg034805.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43730.1	3.9e-09	33.14	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT4G04650.1	2.5e-08	30.22	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G43760.1	2.2e-04	23.24	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 247..331 e-value: 4.4E-12 score: 46.5

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg034805	Spg034805	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg034805.1-cds	Spg034805.1-cds-scaffold3:24561187..24561913	CDS
Spg034805.1-cds	Spg034805.1-cds-scaffold3:24563515..24563751	CDS
Spg034805.1-cds	Spg034805.1-cds-scaffold3:24563885..24564129	CDS
Spg034805.1-cds	Spg034805.1-cds-scaffold3:24564235..24564312	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg034805.1	Spg034805.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity