Spg034702.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg034702.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 44369050 .. 44370069 (+)
Sequence length	1020
RNA-Seq Expression	Spg034702.1
Synteny	Spg034702.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGAAATTTCTTTGAACTCCCAAAAGGAAAGAACGAGAGGTAGAAGTGAAAGAGAAGTTGAAGAGGAAGAAGTGTCAATGACACCTGAGGCACCGAAGAAGAAAACGAAGAGAAGAAAAACGCCTGAAGAAAGAGAGGCCAAAAGATTGAGAAGGCAGCAACAGGCCGAAGTTACAGAGATTCTGCAAAAGGTAATTGAGGATGTTGCAGTGGAAGTGCCTAGGGAAGAACAACTAGCAGCACCTGAAGAAGGAAAAGGTTTGGAGCAAGGAGATCAACCAGTTGAAACCCAGCAGGAACTACAAGAAAAGGGAGTAGAGGATATGCCAGAGCAAGGGAATGGTCAAGAAATTCAAGAACAGAAAGTTCATGGAGAAGTTGTGTCGGAGCCACCACGTCGTCGTCGCCACAAGCAAAAGGCGGGACGAATCAAGAGGATTCGGACGGACACTCCATCTCCGCCAACAACTGAATCAGAAAAAGAAAATACAGAGAAAGAGGATCAAGAGAATGAAGAGACTGAAAAGAAAGCGGAAGAAGAAGCTCTGGCGAAGCAACAGGAAGACAAGGGCAAAGGAATTGTCGAAGCAACAGTAGAAGCAGAGGAAGAAGAAGCTGAGGAACGAAGATTGCTATTTGAGCGCTTCGTCAACAACCTTGCCAGAGCAAAATACTTGGAAATGCTGAAGCAGGACTTTCTATTTGAAAGAGGATTTGGAGATGACCTACCACATTTTCTTCGAGCAGGGATCACAAATCATGGATGGGAGCAATTCTGTGCGAAGCTGGAGCCAGTGAACTCAAATGTAGTTCGCGAGTTCTACACGAATATTGATGAAGAAGATGGCTTCCAGGTGATCGTTCGAGGACTTGCTGTGGATTGGAGCCCAGGTGCGATTAATTCCTTATTTAATATCCAAGATTTCCCCCACAACGGTTACAATGAGATGGTGGCAGCACCATCTAATGATCAGCTGAATTCGGCTACTAGGGAAGTTGGAATTGAAGGGGCTTAG

mRNA sequence

ATGTGTGAAATTTCTTTGAACTCCCAAAAGGAAAGAACGAGAGGTAGAAGTGAAAGAGAAGTTGAAGAGGAAGAAGTGTCAATGACACCTGAGGCACCGAAGAAGAAAACGAAGAGAAGAAAAACGCCTGAAGAAAGAGAGGCCAAAAGATTGAGAAGGCAGCAACAGGCCGAAGTTACAGAGATTCTGCAAAAGGTAATTGAGGATGTTGCAGTGGAAGTGCCTAGGGAAGAACAACTAGCAGCACCTGAAGAAGGAAAAGGTTTGGAGCAAGGAGATCAACCAGTTGAAACCCAGCAGGAACTACAAGAAAAGGGAGTAGAGGATATGCCAGAGCAAGGGAATGGTCAAGAAATTCAAGAACAGAAAGTTCATGGAGAAGTTGTGTCGGAGCCACCACGTCGTCGTCGCCACAAGCAAAAGGCGGGACGAATCAAGAGGATTCGGACGGACACTCCATCTCCGCCAACAACTGAATCAGAAAAAGAAAATACAGAGAAAGAGGATCAAGAGAATGAAGAGACTGAAAAGAAAGCGGAAGAAGAAGCTCTGGCGAAGCAACAGGAAGACAAGGGCAAAGGAATTGTCGAAGCAACAGTAGAAGCAGAGGAAGAAGAAGCTGAGGAACGAAGATTGCTATTTGAGCGCTTCGTCAACAACCTTGCCAGAGCAAAATACTTGGAAATGCTGAAGCAGGACTTTCTATTTGAAAGAGGATTTGGAGATGACCTACCACATTTTCTTCGAGCAGGGATCACAAATCATGGATGGGAGCAATTCTGTGCGAAGCTGGAGCCAGTGAACTCAAATGTAGTTCGCGAGTTCTACACGAATATTGATGAAGAAGATGGCTTCCAGGTGATCGTTCGAGGACTTGCTGTGGATTGGAGCCCAGGTGCGATTAATTCCTTATTTAATATCCAAGATTTCCCCCACAACGGTTACAATGAGATGGTGGCAGCACCATCTAATGATCAGCTGAATTCGGCTACTAGGGAAGTTGGAATTGAAGGGGCTTAG

Coding sequence (CDS)

ATGTGTGAAATTTCTTTGAACTCCCAAAAGGAAAGAACGAGAGGTAGAAGTGAAAGAGAAGTTGAAGAGGAAGAAGTGTCAATGACACCTGAGGCACCGAAGAAGAAAACGAAGAGAAGAAAAACGCCTGAAGAAAGAGAGGCCAAAAGATTGAGAAGGCAGCAACAGGCCGAAGTTACAGAGATTCTGCAAAAGGTAATTGAGGATGTTGCAGTGGAAGTGCCTAGGGAAGAACAACTAGCAGCACCTGAAGAAGGAAAAGGTTTGGAGCAAGGAGATCAACCAGTTGAAACCCAGCAGGAACTACAAGAAAAGGGAGTAGAGGATATGCCAGAGCAAGGGAATGGTCAAGAAATTCAAGAACAGAAAGTTCATGGAGAAGTTGTGTCGGAGCCACCACGTCGTCGTCGCCACAAGCAAAAGGCGGGACGAATCAAGAGGATTCGGACGGACACTCCATCTCCGCCAACAACTGAATCAGAAAAAGAAAATACAGAGAAAGAGGATCAAGAGAATGAAGAGACTGAAAAGAAAGCGGAAGAAGAAGCTCTGGCGAAGCAACAGGAAGACAAGGGCAAAGGAATTGTCGAAGCAACAGTAGAAGCAGAGGAAGAAGAAGCTGAGGAACGAAGATTGCTATTTGAGCGCTTCGTCAACAACCTTGCCAGAGCAAAATACTTGGAAATGCTGAAGCAGGACTTTCTATTTGAAAGAGGATTTGGAGATGACCTACCACATTTTCTTCGAGCAGGGATCACAAATCATGGATGGGAGCAATTCTGTGCGAAGCTGGAGCCAGTGAACTCAAATGTAGTTCGCGAGTTCTACACGAATATTGATGAAGAAGATGGCTTCCAGGTGATCGTTCGAGGACTTGCTGTGGATTGGAGCCCAGGTGCGATTAATTCCTTATTTAATATCCAAGATTTCCCCCACAACGGTTACAATGAGATGGTGGCAGCACCATCTAATGATCAGCTGAATTCGGCTACTAGGGAAGTTGGAATTGAAGGGGCTTAG

Protein sequence

MCEISLNSQKERTRGRSEREVEEEEVSMTPEAPKKKTKRRKTPEEREAKRLRRQQQAEVTEILQKVIEDVAVEVPREEQLAAPEEGKGLEQGDQPVETQQELQEKGVEDMPEQGNGQEIQEQKVHGEVVSEPPRRRRHKQKAGRIKRIRTDTPSPPTTESEKENTEKEDQENEETEKKAEEEALAKQQEDKGKGIVEATVEAEEEEAEERRLLFERFVNNLARAKYLEMLKQDFLFERGFGDDLPHFLRAGITNHGWEQFCAKLEPVNSNVVREFYTNIDEEDGFQVIVRGLAVDWSPGAINSLFNIQDFPHNGYNEMVAAPSNDQLNSATREVGIEGA

Homology

The following BLAST results are available for this feature:

BLAST of Spg034702.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg034702.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg034702.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg034702.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 158..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg034702	Spg034702	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg034702.1-cds	Spg034702.1-cds-scaffold7:44369050..44370069	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg034702.1	Spg034702.1-protein	polypeptide