Spg034342.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg034342.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionZinc finger, CCHC-type
Locationscaffold12: 21250305 .. 21251197 (-)
Sequence length576
RNA-Seq ExpressionSpg034342.1
SyntenySpg034342.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTCCACCAGAGAGTGGGGGCTTAATGTTATGGGTAAAAAATGGCCAAAGACCATTTTGTTCAGAAGGTCCAAAGTTGTCGGGCCTAAATTGGCAGAGAACGACCCATTGCAAGCAAGAAAGGGCTGGGGCAATCCCCAGCCCTCCATGCTGGTCCAAAAGATGGTCCAGAAGATTTTTGATTGGTCCAAAACATTATTTGATCACCATAAGGACAAAAAGTTCCTTCTTGATTGGTCCAAAAGATGACAAAACTAACTCTTGATCTTTGTCATGGTTGGTTGCAATTCATAAGCGTCCAAGTATTAGTGACAGTGTAAAAAACAAATTTTATTCTAGGGAAATGAAAAATAGAAATTAGTTGGGGACTTACAATCATGGCCTAGTGGTCAAATGTCTTTGAAGTCATAGATTTAAATCGTAGAGGTATGTTTTTTTACAAGTCCAAGATTCAAATCCTTTAGGTAATGTAACGACCCTACATTTCATATTTAGATCCTAGGGCCATTACCACATGCAATGCATTTTACTTTTATAAAATAACGATGAAACGACATGATAAGGGAATAAGCAATCAAGAAGCACAAGAAGAAGAATTGCAAGCTCCATCAGCTCAAGAAGAAGAACTTGAAGCTCCACCAGCTCAATTAAGCTTGAATGAAGCTCCATGGGTGTCAATGCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTCCAATGACAAGATCTAGAGCTAAAAGACTACAAGAGGCATTAAATAGTTACTTCCAAGCTAAAGTGACTATCCATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCACCCATTCAACCAAAAGACACAATGAATCTAAAAATCCAGATTCATTCACATATTTAA

mRNA sequence

ATGGTCTCCACCAGAGAGTGGGGGCTTAATGTTATGGGTAAAAAATGGCCAAAGACCATTTTGTTCAGAAGGTCCAAAGTTGTCGGGCCTAAATTGGCAGAGAACGACCCATTGCAAGCAAGAAAGGGCTGGGGCAATCCCCAGCCCTCCATGCTGGTCCAAAAGATGGTCCAGAAGATTTTTGATTGGGCCATTACCACATGCAATGCATTTTACTTTTATAAAATAACGATGAAACGACATGATAAGGGAATAAGCAATCAAGAAGCACAAGAAGAAGAATTGCAAGCTCCATCAGCTCAAGAAGAAGAACTTGAAGCTCCACCAGCTCAATTAAGCTTGAATGAAGCTCCATGGGTGTCAATGCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTCCAATGACAAGATCTAGAGCTAAAAGACTACAAGAGGCATTAAATAGTTACTTCCAAGCTAAAGTGACTATCCATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCACCCATTCAACCAAAAGACACAATGAATCTAAAAATCCAGATTCATTCACATATTTAA

Coding sequence (CDS)

ATGGTCTCCACCAGAGAGTGGGGGCTTAATGTTATGGGTAAAAAATGGCCAAAGACCATTTTGTTCAGAAGGTCCAAAGTTGTCGGGCCTAAATTGGCAGAGAACGACCCATTGCAAGCAAGAAAGGGCTGGGGCAATCCCCAGCCCTCCATGCTGGTCCAAAAGATGGTCCAGAAGATTTTTGATTGGGCCATTACCACATGCAATGCATTTTACTTTTATAAAATAACGATGAAACGACATGATAAGGGAATAAGCAATCAAGAAGCACAAGAAGAAGAATTGCAAGCTCCATCAGCTCAAGAAGAAGAACTTGAAGCTCCACCAGCTCAATTAAGCTTGAATGAAGCTCCATGGGTGTCAATGCCAATTGAATCCAATCATGAGGAGATCATTATGCCACAAGCTCCAATGACAAGATCTAGAGCTAAAAGACTACAAGAGGCATTAAATAGTTACTTCCAAGCTAAAGTGACTATCCATGACCAAGAGTTGCATCCATTCAAGCTTGGAAAGGCACCCATTCAACCAAAAGACACAATGAATCTAAAAATCCAGATTCATTCACATATTTAA

Protein sequence

MVSTREWGLNVMGKKWPKTILFRRSKVVGPKLAENDPLQARKGWGNPQPSMLVQKMVQKIFDWAITTCNAFYFYKITMKRHDKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRSRAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTMNLKIQIHSHI
Homology
[Close]
BLAST of Spg034342.1 vs. NCBI nr
Match: TYK15114.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-04
Identity = 36/110 (32.73%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 82  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRS 141
           ++G +++    E     + +E E  A        E  W ++ I++N E IIM Q  MT++
Sbjct: 362 EEGENDKMLNNEAYTNSNKEENETHA--------ENSWGNIQIQTNQETIIMTQGSMTKA 421

Query: 142 RAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTMNLKIQIHSHI 192
           RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  MNL+I+IHSH+
Sbjct: 422 RAKRFRDELNACLQARFSVFNKEL---ELQESLGHPRLIMNLEIKIHSHL 460

[Close]
BLAST of Spg034342.1 vs. NCBI nr
Match: KAA0065903.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.6e-04
Identity = 36/110 (32.73%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 82  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRS 141
           ++G +++    E     + +E E  A        E  W ++ I++N E IIM Q  MT++
Sbjct: 398 EEGENDKMLNNEAYTNSNKEENETHA--------ENSWGNIQIQTNQETIIMTQGSMTKA 457

Query: 142 RAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTMNLKIQIHSHI 192
           RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  MNL+I+IHSH+
Sbjct: 458 RAKRFRDELNACLQARFSVFNKEL---ELQESLGHPRLIMNLEIKIHSHL 496

[Close]
BLAST of Spg034342.1 vs. ExPASy TrEMBL
Match: A0A5D3CW05 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00430 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-04
Identity = 36/110 (32.73%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 82  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRS 141
           ++G +++    E     + +E E  A        E  W ++ I++N E IIM Q  MT++
Sbjct: 362 EEGENDKMLNNEAYTNSNKEENETHA--------ENSWGNIQIQTNQETIIMTQGSMTKA 421

Query: 142 RAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTMNLKIQIHSHI 192
           RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  MNL+I+IHSH+
Sbjct: 422 RAKRFRDELNACLQARFSVFNKEL---ELQESLGHPRLIMNLEIKIHSHL 460

[Close]
BLAST of Spg034342.1 vs. ExPASy TrEMBL
Match: A0A5A7VCL9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G00820 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-04
Identity = 36/110 (32.73%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 82  DKGISNQEAQEEELQAPSAQEEELEAPPAQLSLNEAPWVSMPIESNHEEIIMPQAPMTRS 141
           ++G +++    E     + +E E  A        E  W ++ I++N E IIM Q  MT++
Sbjct: 398 EEGENDKMLNNEAYTNSNKEENETHA--------ENSWGNIQIQTNQETIIMTQGSMTKA 457

Query: 142 RAKRLQEALNSYFQAKVTIHDQELHPFKLGKAPIQPKDTMNLKIQIHSHI 192
           RAKR ++ LN+  QA+ ++ ++EL   +L ++   P+  MNL+I+IHSH+
Sbjct: 458 RAKRFRDELNACLQARFSVFNKEL---ELQESLGHPRLIMNLEIKIHSHL 496

The following BLAST results are available for this feature:
BLAST of Spg034342.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK15114.14.6e-0432.73Zinc finger, CCHC-type [Cucumis melo var. makuwa][more]
KAA0065903.14.6e-0432.73reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Spg034342.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg034342.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CW052.2e-0432.73Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5A7VCL92.2e-0432.73Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold53... [more]
BLAST of Spg034342.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg034342Spg034342gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg034342.1-cdsSpg034342.1-cds-scaffold12:21250305..21250692CDS
Spg034342.1-cdsSpg034342.1-cds-scaffold12:21251010..21251197CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg034342.1Spg034342.1-proteinpolypeptide