Spg033858.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg033858.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	60S ribosomal protein L17
Location	scaffold13: 35867078 .. 35869406 (+)
Sequence length	552
RNA-Seq Expression	Spg033858.1
Synteny	Spg033858.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCCAAATCCAACTTTTTTTCTCAAGCCGAAGTTGCAGCCGTCGCCATGGTTCGTCTTCTATCTTCTTGATTTATTCTTCGGAACAATGTCTTCTGAGTTTTAAGTTAGCGATCAATCTTCAATTCCCCGTTTTTGTTCATTGTTGCAGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTGTATGTTTTCTTTTTCTACACTTTTTCTTATGGATCTCGTTTGATTTCTGTCTGCATCTTTGCTTTCGTTTTGTCTATCTTCTATCCGCTTGAATTTTTTGACAACAGTGATATTTTCAACTTGAACTGACGCCCTGTTTTTCTCTTTTCAGCCTGCAAAGCCAGAGGCTCGGACCTCAGAGTTCACTTTAAGGTAGGGTTTATTTCACTAATTTGAGTCTGCAATCCTTTAAAATGCCAATCGATTAGAAGTTCTACGAACTAGGGTTTGCACCAGTAGCGATTAGACTTAGCATTTTTGTTCTAGGAACTAAATTTTCTCGTTAGGAGTGATGCATGTTCTTGACGCACGTAGTGGTGTTAGGCATACAACTTTCTGTTTTCTTTGATTTCTCTTATCGAGTTTCCTATGAACAGTTTTCTACCTCTATCCGATGTATAGAGTGTTTGATCCAAGAACGTATACCCTTTTTCGGTGCAAGTAATTGATTGGTTTAAGTGATAATATTTTAGGTTGTTTGTTAATGATTACATCTTCTAAGCCTAGTTTCTCAAAACAATCGCAGTTGCTATATAAGAGCTTTCGCCTTTACCAGGCTTGAAGGCTAATGCTGGTCACACCCTTCTCTTATTAGCTACTCACATTAACTATACATATGACCTTCCTTGATATTTCTGTGTAACCTGATGATAAAAGCAGGGCTCTGTTGCCTTCTGTGAACAGGGCTCTCGTAAACTTCAGGGAAATTATATGCATTGTTATTGGGTGAACCTCTGTAACCCATAGTGTCTGAAGGTTCAGTAAATGATGCTACATATTTTAGCTTGTATTTTAACTTGCTTATTTCAGTACCGTATGTTGTTATTTAGACTTGCAATAACACGTCTCTCTTTCATATTATAGAACACAAGGGAAACTGCCTTTGCCATCAGAAAGTTGCCACTGGCTAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAGGCCATTCCATTCCGTCGCTTCTGTGGTGGTGTTGGACGGACTGCTCAGGCAAAGAACAGGCATTCCAATGGCCAAGGACGCTGGCCTGTCAAATCTGCGAAGTTTATTCTAGATTTGCTTAAGAATGCCGAGAGCAATGCTGAAGTATGTATTTCCTTTTTGGTCTCACCCTGAATAGTTAAGTTTTTTTTCTTCCATCTTGCTCATAATTATATCTGTTCTTTCAGGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCACATGGAAGAATCAACCGTATGTTCTAACAACAATCTACTTAATTTACTATGGATGTCTGCATCCAACATCCAGCCTGACCTTCCCGTCCCTTTCCTTTCTTTTTTGTTTGGCAGCTTACATGTCTTCTCCTTGCCATATTGAGCTGATCTTGTCTGAAAAGGAAGAGCCTGTGAAGAAGGAGGTATTAATCTGAAATTGCCTAATTACATATGTGCTGGAAAGGATAGATTTGCTTTATCCGTATTTCTTATTATTCATTGTTCTTGACATTACAGCCCGAGACTCAGCTGGCGACTGGCAAACCAAAGAAAGGTCAAGCTATCCGTAGTGGTTCTTCCTCTTGAATGGAAAAAGTATAAATTCTGTTGTGGGTTTTGCTGTGCCATTTCTTTTTTGAAGTGAGTTTAATTATTGATCACCATATATAACGGAGTATTATTATTTAGATGTTTTGTGTGACATGTCATATTCGGAACCTTTTCTAGTTCAATTTTCTGCAAGTTGCAATCACATTCTGGTATTTGGTTTTATTTCATAATTCTATCTGACAACCCCCTGGCATAACCAACAATCGTTATTGATTTACTTCTGCTAAAATAACAACGAAAGAACTCTCCCGAGTCGGGTTCTGGAGTTGAGTGAATGGTAGGTCATTGGTCCTTCCTCTAGGTTCTCTCCTCACAAGCATAATTTAAAATCAAAGTGTATCACCAAAGGTTATACTGCTCTCTAGCCATGTGTAATTTGGGTCTATTTTGATTTCTGTAAGAACACAGTGCCGATACACCTACTTTTGTAACATTTAGTGATGGGGTGTTGAAGTCATTTTCTTTTCC

mRNA sequence

ATGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTCCTGCAAAGCCAGAGGCTCGGACCTCAGAGTTCACTTTAAGAACACAAGGGAAACTGCCTTTGCCATCAGAAAGTTGCCACTGGCTAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAGGCCATTCCATTCCGTCGCTTCTGTGGTGGTGTTGGACGGACTGCTCAGGCAAAGAACAGGCATTCCAATGGCCAAGGACGCTGGCCTGTCAAATCTGCGAAGTTTATTCTAGATTTGCTTAAGAATGCCGAGAGCAATGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCACATGGAAGAATCAACCCTTACATGTCTTCTCCTTGCCATATTGAGCTGATCTTGTCTGAAAAGGAAGAGCCTGTGAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGCAAACCAAAGAAAGGTCAAGCTATCCGTAGTGGTTCTTCCTCTTGA

Coding sequence (CDS)

ATGGTGAAGTATTCGAGGGAACCAGACAATCCCACCAAGTCCTGCAAAGCCAGAGGCTCGGACCTCAGAGTTCACTTTAAGAACACAAGGGAAACTGCCTTTGCCATCAGAAAGTTGCCACTGGCTAAGGCCAAGAGGTACCTAGAGGATGTACTTGCCCACAAACAGGCCATTCCATTCCGTCGCTTCTGTGGTGGTGTTGGACGGACTGCTCAGGCAAAGAACAGGCATTCCAATGGCCAAGGACGCTGGCCTGTCAAATCTGCGAAGTTTATTCTAGATTTGCTTAAGAATGCCGAGAGCAATGCTGAAGTTAAGGGTCTGGATGTTGATTTGCTCCACGTATCTCACATCCAGGTAAACCAAGCTCAGAAACAAAGGCGTCGTACCTACCGTGCACATGGAAGAATCAACCCTTACATGTCTTCTCCTTGCCATATTGAGCTGATCTTGTCTGAAAAGGAAGAGCCTGTGAAGAAGGAGCCCGAGACTCAGCTGGCGACTGGCAAACCAAAGAAAGGTCAAGCTATCCGTAGTGGTTCTTCCTCTTGA

Protein sequence

MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSGSSS

Homology

[Close]

BLAST of Spg033858.1 vs. NCBI nr
Match: XP_008445497.1 (PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo])

HSP 1 Score: 364.4 bits (934), Expect = 5.8e-97
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. NCBI nr
Match: XP_038885177.1 (60S ribosomal protein L17-2-like [Benincasa hispida])

HSP 1 Score: 361.7 bits (927), Expect = 3.8e-96
Identity = 181/183 (98.91%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. NCBI nr
Match: XP_004144196.1 (60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal protein L17-2-like [Momordica charantia] >XP_022962539.1 60S ribosomal protein L17-2-like [Cucurbita moschata] >KAG6598615.1 60S ribosomal protein L17-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 361.3 bits (926), Expect = 4.9e-96
Identity = 180/183 (98.36%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. NCBI nr
Match: XP_023545223.1 (60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 359.8 bits (922), Expect = 1.4e-95
Identity = 179/183 (97.81%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. NCBI nr
Match: XP_022997268.1 (60S ribosomal protein L17-2-like [Cucurbita maxima])

HSP 1 Score: 357.5 bits (916), Expect = 7.1e-95
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLATGKPKKGQALRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. ExPASy Swiss-Prot
Match: P51413 (60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2)

HSP 1 Score: 310.1 bits (793), Expect = 1.7e-83
Identity = 156/176 (88.64%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Spg033858.1 vs. ExPASy Swiss-Prot
Match: Q93VI3 (60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 3.8e-83
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Spg033858.1 vs. ExPASy Swiss-Prot
Match: O48557 (60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.7e-81
Identity = 149/170 (87.65%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EP NPTKS KA G DLRVHFKNTRETAFA+RKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RR+CGGVGRTAQAK+RHSNGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD L+VSHIQV
Sbjct: 61  RRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADNIVAARK 170

[Close]

BLAST of Spg033858.1 vs. ExPASy Swiss-Prot
Match: P35266 (60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.3e-78
Identity = 143/167 (85.63%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS +P NPTKS KA G DLRVHFKNTRETAFA+RK+PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSAKF+LDLLKNAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 168
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+ +A
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESHIA 167

[Close]

BLAST of Spg033858.1 vs. ExPASy Swiss-Prot
Match: P35267 (60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 6.3e-78
Identity = 142/170 (83.53%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSR+P NPTKS KA G DLRVHFKNTRETAFA+R++PL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RR+C GVGRTAQ KNR  NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L++SHIQV
Sbjct: 61  RRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK 171
           NQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE +  +A  K
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEADNVVAPRK 170

[Close]

BLAST of Spg033858.1 vs. ExPASy TrEMBL
Match: A0A1S3BCV8 (60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 2.8e-97
Identity = 182/183 (99.45%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. ExPASy TrEMBL
Match: A0A6J1BRY8 (60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-96
Identity = 180/183 (98.36%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. ExPASy TrEMBL
Match: A0A6J1HHD8 (60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 PE=3 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.4e-96
Identity = 180/183 (98.36%), Postives = 182/183 (99.45%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. ExPASy TrEMBL
Match: A0A6J1KDD3 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492225 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.4e-95
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPLAKAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLAKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSH+QV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHVQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEE VKKEPETQLATGKPKKGQA+RSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVKKEPETQLATGKPKKGQALRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. ExPASy TrEMBL
Match: A0A6J1KKP7 (60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=3 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 8.5e-94
Identity = 177/183 (96.72%), Postives = 179/183 (97.81%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYSREPDNPTKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDVLAHKQAIPF
Sbjct: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
           RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLL NAESNAEVKGLDVDLLHVSHIQV
Sbjct: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLVNAESNAEVKGLDVDLLHVSHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQAIRSG 180
           NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGK KKG+AIRSG
Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKSKKGRAIRSG 180

Query: 181 SSS 184
           +SS
Sbjct: 181 ASS 183

[Close]

BLAST of Spg033858.1 vs. TAIR 10
Match: AT1G67430.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-84
Identity = 156/176 (88.64%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKSAA 175

[Close]

BLAST of Spg033858.1 vs. TAIR 10
Match: AT1G27400.1 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 308.9 bits (790), Expect = 2.7e-84
Identity = 155/174 (89.08%), Postives = 162/174 (93.10%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARG+DLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD L +SHIQV
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQV 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKG 175
           NQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA  K KKG
Sbjct: 121 NQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKKG 173

[Close]

BLAST of Spg033858.1 vs. TAIR 10
Match: AT1G67430.2 (Ribosomal protein L22p/L17e family protein )

HSP 1 Score: 208.4 bits (529), Expect = 5.0e-54
Identity = 117/176 (66.48%), Postives = 121/176 (68.75%), Query Frame = 0


Query: 1   MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPF 60
           MVKYS+EPDN TKSCKARGSDLRVHFKNTRETA AIRKLPL KAKRYLEDV+AHKQAIPF
Sbjct: 1   MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPF 60

Query: 61  RRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDLLHVSHIQV 120
            RFC GVGRTAQAKNRHSNGQGRWP KSA+F+LDLLKNAESNA                 
Sbjct: 61  TRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNA----------------- 120

Query: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATGKPKKGQA 177
                                      ELILSEKEEPVKKEPETQLA  K KK  A
Sbjct: 121 ---------------------------ELILSEKEEPVKKEPETQLA-AKSKKSAA 131

The following BLAST results are available for this feature:

BLAST of Spg033858.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445497.1	5.8e-97	99.45	PREDICTED: 60S ribosomal protein L17-2-like [Cucumis melo]	[more]
XP_038885177.1	3.8e-96	98.91	60S ribosomal protein L17-2-like [Benincasa hispida]	[more]
XP_004144196.1	4.9e-96	98.36	60S ribosomal protein L17-2 [Cucumis sativus] >XP_022132326.1 60S ribosomal prot...	[more]
XP_023545223.1	1.4e-95	97.81	60S ribosomal protein L17-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022997268.1	7.1e-95	97.27	60S ribosomal protein L17-2-like [Cucurbita maxima]	[more]

BLAST of Spg033858.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51413	1.7e-83	88.64	60S ribosomal protein L17-2 OS=Arabidopsis thaliana OX=3702 GN=RPL17B PE=2 SV=2	[more]
Q93VI3	3.8e-83	89.08	60S ribosomal protein L17-1 OS=Arabidopsis thaliana OX=3702 GN=RPL17A PE=2 SV=1	[more]
O48557	2.7e-81	87.65	60S ribosomal protein L17 OS=Zea mays OX=4577 GN=RPL17 PE=2 SV=1	[more]
P35266	1.3e-78	85.63	60S ribosomal protein L17-1 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]
P35267	6.3e-78	83.53	60S ribosomal protein L17-2 OS=Hordeum vulgare OX=4513 PE=2 SV=1	[more]

BLAST of Spg033858.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BCV8	2.8e-97	99.45	60S ribosomal protein L17-2-like OS=Cucumis melo OX=3656 GN=LOC103488496 PE=3 SV...	[more]
A0A6J1BRY8	2.4e-96	98.36	60S ribosomal protein L17-2-like OS=Momordica charantia OX=3673 GN=LOC111005205 ...	[more]
A0A6J1HHD8	2.4e-96	98.36	60S ribosomal protein L17-2-like OS=Cucurbita moschata OX=3662 GN=LOC111462939 P...	[more]
A0A6J1KDD3	3.4e-95	97.27	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492225 PE=...	[more]
A0A6J1KKP7	8.5e-94	96.72	60S ribosomal protein L17-2-like OS=Cucurbita maxima OX=3661 GN=LOC111496586 PE=...	[more]

BLAST of Spg033858.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67430.1	1.2e-84	88.64	Ribosomal protein L22p/L17e family protein	[more]
AT1G27400.1	2.7e-84	89.08	Ribosomal protein L22p/L17e family protein	[more]
AT1G67430.2	5.0e-54	66.48	Ribosomal protein L22p/L17e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	TIGRFAM	TIGR01038	TIGR01038	coord: 4..154 e-value: 2.5E-60 score: 200.7
IPR005721	Ribosomal protein L22/L17, eukaryotic/archaeal	PANTHER	PTHR11593	60S RIBOSOMAL PROTEIN L17	coord: 1..183
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 1..181 e-value: 6.9E-76 score: 256.0
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 1..154
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 17..152 e-value: 6.7E-38 score: 129.1
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 15..151 e-value: 3.01857E-36 score: 119.903
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..167
None	No IPR available	PANTHER	PTHR11593:SF35	60S RIBOSOMAL PROTEIN L17-2-LIKE	coord: 1..183
IPR018260	Ribosomal protein L22/L17, conserved site	PROSITE	PS00464	RIBOSOMAL_L22	coord: 127..151

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg033858	Spg033858	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg033858.1-five_prime_utr	Spg033858.1-five_prime_utr-scaffold13:35867078..35867124	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg033858.1-cds	Spg033858.1-cds-scaffold13:35867125..35867127	CDS
Spg033858.1-cds	Spg033858.1-cds-scaffold13:35867228..35867264	CDS
Spg033858.1-cds	Spg033858.1-cds-scaffold13:35867417..35867457	CDS
Spg033858.1-cds	Spg033858.1-cds-scaffold13:35868169..35868399	CDS
Spg033858.1-cds	Spg033858.1-cds-scaffold13:35868483..35868585	CDS
Spg033858.1-cds	Spg033858.1-cds-scaffold13:35868684..35868751	CDS
Spg033858.1-cds	Spg033858.1-cds-scaffold13:35868846..35868914	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg033858.1-three_prime_utr	Spg033858.1-three_prime_utr-scaffold13:35868915..35869406	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg033858.1	Spg033858.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome