Spg033476.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg033476.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S17-like
Location	scaffold5: 4849978 .. 4850638 (+)
Sequence length	435
RNA-Seq Expression	Spg033476.1
Synteny	Spg033476.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCTTCCAAGAGACTGCAAAACAAGATCGCCGGATTCTCCACTCATCTCATGAAGCGGATCCAGAAGGGACCGGTTCGCGGCATCTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGCATGGACTTCGTTCCCGACGTATCCGCCATTAAAACCGAACAAATCGAGGTCGACAAGGAGACTCTCGATATGCTTTCTACTCTTGGAATGAACGATATTCCGGGGCTTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGATTTGGATTGGCCGGTCGCGGTAGGAGGTACTGAGATTATTGACTAGGGTTTTGTTTTTCTTTGAACTGATTTTCTGTTGGGGTTCAATACAATTTTGTGATTTAGTTTTGTTTATGAGTATTGTTACTTTCTGCTATGCCAAAGGATATGAAATTGTCATATTGATTTCGAGTAACCTTCATCAATAGAGAGATTTTCTTTCGAAGTTCTTGAGGGATTTGTGTTGTTTTAATCTGATGTGTTGCTTCTGAGTGATGCTGGTTTCTGGGCTTAG

mRNA sequence

ATGGGGCGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCTTCCAAGAGACTGCAAAACAAGATCGCCGGATTCTCCACTCATCTCATGAAGCGGATCCAGAAGGGACCGGTTCGCGGCATCTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGCATGGACTTCGTTCCCGACGTATCCGCCATTAAAACCGAACAAATCGAGGTCGACAAGGAGACTCTCGATATGCTTTCTACTCTTGGAATGAACGATATTCCGGGGCTTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGATTTGGATTGGCCGGTCGCGGTAGGAGTGATGCTGGTTTCTGGGCTTAG

Coding sequence (CDS)

ATGGGGCGCGTTCGCACCAAAACAGTGAAGAAATCTTCCCGTCAAGTCATCGAGCGCTACTACTCGCGCATGACCCTCGACTTCCATACGAACAAGAAGATCCTCGAAGAGGTCGCCATTATCCCTTCCAAGAGACTGCAAAACAAGATCGCCGGATTCTCCACTCATCTCATGAAGCGGATCCAGAAGGGACCGGTTCGCGGCATCTCTCTGAAGCTTCAAGAGGAAGAGCGCGAGCGCCGCATGGACTTCGTTCCCGACGTATCCGCCATTAAAACCGAACAAATCGAGGTCGACAAGGAGACTCTCGATATGCTTTCTACTCTTGGAATGAACGATATTCCGGGGCTTGTTCAGGTCGATCCGACTGTGCCGCAGCAGGTTGGATTTGGATTGGCCGGTCGCGGTAGGAGTGATGCTGGTTTCTGGGCTTAG

Protein sequence

MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQVDPTVPQQVGFGLAGRGRSDAGFWA

Homology

[Close]

BLAST of Spg033476.1 vs. NCBI nr
Match: KAE8651099.1 (hypothetical protein Csa_001438 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 3.2e-66
Identity = 135/142 (95.07%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGRSDAGF 143
           DPTVPQQVGFGL GRGRS   F
Sbjct: 121 DPTVPQQVGFGLGGRGRSSLFF 142

[Close]

BLAST of Spg033476.1 vs. NCBI nr
Match: XP_008442886.1 (PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa] >TYK25293.1 40S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 260.4 bits (664), Expect = 9.3e-66
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGR 138
           DPTVPQQVGFGL GRGR
Sbjct: 121 DPTVPQQVGFGLGGRGR 137

[Close]

BLAST of Spg033476.1 vs. NCBI nr
Match: XP_004136500.1 (40S ribosomal protein S17 [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGR 138
           DPTVPQQVGFGL GRGR
Sbjct: 121 DPTVPQQVGFGLGGRGR 137

[Close]

BLAST of Spg033476.1 vs. NCBI nr
Match: XP_038904935.1 (40S ribosomal protein S17-like [Benincasa hispida])

HSP 1 Score: 258.5 bits (659), Expect = 3.5e-65
Identity = 131/137 (95.62%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD+SA+KT+QIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDISAVKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGR 138
           DPTVPQQVGFGL GRGR
Sbjct: 121 DPTVPQQVGFGLGGRGR 137

[Close]

BLAST of Spg033476.1 vs. NCBI nr
Match: XP_022144698.1 (40S ribosomal protein S17-like [Momordica charantia])

HSP 1 Score: 255.4 bits (651), Expect = 3.0e-64
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRG 137
           DP+VPQQVGFGL GRG
Sbjct: 121 DPSVPQQVGFGLGGRG 136

[Close]

BLAST of Spg033476.1 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 216.5 bits (550), Expect = 2.0e-55
Identity = 117/142 (82.39%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT+ IEVDKETLDMLS LGM+D+PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVK- 120

Query: 121 DPTVPQQVGFGLAGRGRSDAGF 143
               PQ V   L   GR   GF
Sbjct: 121 QAAEPQAVA-ALPSYGRGGGGF 140

[Close]

BLAST of Spg033476.1 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 211.1 bits (536), Expect = 8.5e-54
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP 123
           +P
Sbjct: 121 EP 122

[Close]

BLAST of Spg033476.1 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 208.8 bits (530), Expect = 4.2e-53
Identity = 107/122 (87.70%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP 123
           DP
Sbjct: 121 DP 122

[Close]

BLAST of Spg033476.1 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 208.0 bits (528), Expect = 7.2e-53
Identity = 106/122 (86.89%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 DP 123
           +P
Sbjct: 121 EP 122

[Close]

BLAST of Spg033476.1 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 206.1 bits (523), Expect = 2.7e-52
Identity = 105/121 (86.78%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIK + ++VDKETL+ML++LGM+DI G+ QV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 D 122
           +
Sbjct: 121 E 121

[Close]

BLAST of Spg033476.1 vs. ExPASy TrEMBL
Match: A0A5A7TQK2 (40S ribosomal protein S17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004290 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.5e-66
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGR 138
           DPTVPQQVGFGL GRGR
Sbjct: 121 DPTVPQQVGFGLGGRGR 137

[Close]

BLAST of Spg033476.1 vs. ExPASy TrEMBL
Match: A0A1S3B6R7 (40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.5e-66
Identity = 134/137 (97.81%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGR 138
           DPTVPQQVGFGL GRGR
Sbjct: 121 DPTVPQQVGFGLGGRGR 137

[Close]

BLAST of Spg033476.1 vs. ExPASy TrEMBL
Match: A0A0A0LB02 (40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 7.7e-66
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMT+DFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTIDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRGR 138
           DPTVPQQVGFGL GRGR
Sbjct: 121 DPTVPQQVGFGLGGRGR 137

[Close]

BLAST of Spg033476.1 vs. ExPASy TrEMBL
Match: A0A6J1CU03 (40S ribosomal protein S17-like OS=Momordica charantia OX=3673 GN=LOC111014323 PE=3 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 131/136 (96.32%), Postives = 134/136 (98.53%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVDKETLDMLS LGMNDIPGLVQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMNDIPGLVQV 120

Query: 121 DPTVPQQVGFGLAGRG 137
           DP+VPQQVGFGL GRG
Sbjct: 121 DPSVPQQVGFGLGGRG 136

[Close]

BLAST of Spg033476.1 vs. ExPASy TrEMBL
Match: A0A6J1FC93 (40S ribosomal protein S17-like OS=Cucurbita moschata OX=3662 GN=LOC111444300 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 9.4e-64
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPDVSAIKT+QIEVD+ETLDMLS LGM DIPG+VQV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDRETLDMLSALGMTDIPGIVQV 120

Query: 121 DPTVPQQVGFGLAGRGR 138
           DPTVPQQV FGL GRGR
Sbjct: 121 DPTVPQQVAFGLGGRGR 137

[Close]

BLAST of Spg033476.1 vs. TAIR 10
Match: AT5G04800.1 (Ribosomal S17 family protein )

HSP 1 Score: 211.1 bits (536), Expect = 6.0e-55
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP 123
           +P
Sbjct: 121 EP 122

[Close]

BLAST of Spg033476.1 vs. TAIR 10
Match: AT5G04800.2 (Ribosomal S17 family protein )

HSP 1 Score: 211.1 bits (536), Expect = 6.0e-55
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP 123
           +P
Sbjct: 121 EP 122

[Close]

BLAST of Spg033476.1 vs. TAIR 10
Match: AT5G04800.3 (Ribosomal S17 family protein )

HSP 1 Score: 211.1 bits (536), Expect = 6.0e-55
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP 123
           +P
Sbjct: 121 EP 122

[Close]

BLAST of Spg033476.1 vs. TAIR 10
Match: AT5G04800.4 (Ribosomal S17 family protein )

HSP 1 Score: 211.1 bits (536), Expect = 6.0e-55
Identity = 107/122 (87.70%), Postives = 118/122 (96.72%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 DP 123
           +P
Sbjct: 121 EP 122

[Close]

BLAST of Spg033476.1 vs. TAIR 10
Match: AT2G04390.1 (Ribosomal S17 family protein )

HSP 1 Score: 208.8 bits (530), Expect = 3.0e-54
Identity = 107/122 (87.70%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLQNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRL+NKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSTLGMNDIPGLVQV 120
           IQKGPVRGISLKLQEEERERRMDFVPD SAIKT++I+VDKETL+ML++LGM+D  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 DP 123
           DP
Sbjct: 121 DP 122

The following BLAST results are available for this feature:

BLAST of Spg033476.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651099.1	3.2e-66	95.07	hypothetical protein Csa_001438 [Cucumis sativus]	[more]
XP_008442886.1	9.3e-66	97.81	PREDICTED: 40S ribosomal protein S17-like [Cucumis melo] >KAA0043841.1 40S ribos...	[more]
XP_004136500.1	1.6e-65	97.08	40S ribosomal protein S17 [Cucumis sativus]	[more]
XP_038904935.1	3.5e-65	95.62	40S ribosomal protein S17-like [Benincasa hispida]	[more]
XP_022144698.1	3.0e-64	96.32	40S ribosomal protein S17-like [Momordica charantia]	[more]

BLAST of Spg033476.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49215	2.0e-55	82.39	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
Q9LZ17	8.5e-54	87.70	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
P49205	4.2e-53	87.70	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]
Q9SJ36	7.2e-53	86.89	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
Q9SQZ1	2.7e-52	86.78	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]

BLAST of Spg033476.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQK2	4.5e-66	97.81	40S ribosomal protein S17-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B6R7	4.5e-66	97.81	40S ribosomal protein S17-like OS=Cucumis melo OX=3656 GN=LOC103486651 PE=3 SV=1	[more]
A0A0A0LB02	7.7e-66	97.08	40S ribosomal protein S17 OS=Cucumis sativus OX=3659 GN=Csa_3G778310 PE=3 SV=1	[more]
A0A6J1CU03	1.4e-64	96.32	40S ribosomal protein S17-like OS=Momordica charantia OX=3673 GN=LOC111014323 PE...	[more]
A0A6J1FC93	9.4e-64	94.16	40S ribosomal protein S17-like OS=Cucurbita moschata OX=3662 GN=LOC111444300 PE=...	[more]

BLAST of Spg033476.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04800.1	6.0e-55	87.70	Ribosomal S17 family protein	[more]
AT5G04800.2	6.0e-55	87.70	Ribosomal S17 family protein	[more]
AT5G04800.3	6.0e-55	87.70	Ribosomal S17 family protein	[more]
AT5G04800.4	6.0e-55	87.70	Ribosomal S17 family protein	[more]
AT2G04390.1	3.0e-54	87.70	Ribosomal S17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..120 e-value: 2.3E-60 score: 201.9
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..135
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.409351
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	1.10.60.20		coord: 1..62 e-value: 8.5E-32 score: 110.5
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	116820	Rps17e-like	coord: 1..62
None	No IPR available	PANTHER	PTHR10732:SF5	40S RIBOSOMAL PROTEIN S17	coord: 1..135

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg033476	Spg033476	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg033476.1-cds	Spg033476.1-cds-scaffold5:4849978..4850390	CDS
Spg033476.1-cds	Spg033476.1-cds-scaffold5:4850617..4850638	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg033476.1	Spg033476.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding