Spg032893.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg032893.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold11: 14578299 .. 14579552 (-)
Sequence length363
RNA-Seq ExpressionSpg032893.1
SyntenySpg032893.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTTGTCACCTCGATAGGTGTAGGGAAGAGCTAAAGAGTCAAATTTTTTGCAAATTAGCATGTTTGATCTTGCTTAGGGGGAAAGAAAAGAATATATGCTTGTCATGCTCATAAAGATAAATAATTCTTGTTGTTACAATTTGAAGGAAAAATTTATTATGCCATGGCCTGTGCACAGCTTGCAATGAGTAATAAAGATTTAGGCAAAAAGAGCTACCCCTGTTGTGATCAGTTAGGCCAACCAGAGAAAACTCAGGTTAAGGGTCCCTACAATAGGTGTGTGAAAGCTAGTGCCAAATATAAATGCTTGATTTAATTTTCAGTTATAAGCACCTAAGTATGGGGGAAAACAAACTAATTTGTTCCATTGACTCGTTAGTGAATCCTTAGTGTCAGTGTAGAGGGAAGATGAGCTGAGAGTTTAGTAATCCAATCCCGGGCTAGGAGAGTCTGATCTTGTTAAGTTAGATCTCGCTTGTGCAAGTTAATTTTGGAAAACTTTTGATTTGTCTCCCTCATTGGTCCTTATGTGCATGTCTCTTGTTTGCTTGACTATTGACTTTTGAGCCTTGAGGATTGAGTCATGTTTGTTGCATCCATTCTTCAACTGTATGCTTGATTTTAGTGCTCGAGGACTAGCAAAAGTTTAAGTTTGGGGGTGTTTGATAGCGAGCATAGCTAGCTATTTTTCCCTAATTTATTTAGCTAGTCTTTTATGATTATTTGGCCAAAATTATGCATTTTCATGTTATATTTGTAGGAATCATGTTTCGGAGTTAAATCGAGAAATTGGAGCTAAATATGTGTTCGGGACATGAAAATTGGCTGAAGAACGGAAAAGATTAAAGGTAGAAGAAGTCAAAAGAGAGCCATCTGCAGACCAGCGTCGGGATGCTGCGCTTGGAGCGTCTCGACGCTGCCTTTCCTTTTCTGAAATAGGCGGCAACAGGTCACAGCGTCGAGACGCTGTGACCCTAGCGTCTCGACACTCTCAGTTTTTCCCTAAGCAGAATGTGCCGCAGGCGGTAGCGTCGCGACGCTACCCCTATAGCGTCGCGACGCTACGACTAAATTTTGCCCTATTTATAGTTTGCGATTAGGGCTGATTTGGGGACTTCTTTTGGACACCTTGGAGCCGTTAAACAGAGCAAAAACAGAGTCTTTGGAGCTGATTAAGGGAGAGCAAAGTGGAAATCAACCCATTGTTCGTGGGGATCGTGACGAGGACGTTCGGTCTCGGCCTACATAG

mRNA sequence

ATGCTTGTTGTCACCTCGATAGGTCTTGCAATGAGTAATAAAGATTTAGGCAAAAAGAGCTACCCCTGTTGTGATCAGTTAGGCCAACCAGAGAAAACTCAGGTAGAAGAAGTCAAAAGAGAGCCATCTGCAGACCAGCGTCGGGATGCTGCGCTTGGAGCGTCTCGACGCTGCCTTTCCTTTTCTGAAATAGGCGGCAACAGTTTGCGATTAGGGCTGATTTGGGGACTTCTTTTGGACACCTTGGAGCCGTTAAACAGAGCAAAAACAGAGTCTTTGGAGCTGATTAAGGGAGAGCAAAGTGGAAATCAACCCATTGTTCGTGGGGATCGTGACGAGGACGTTCGGTCTCGGCCTACATAG

Coding sequence (CDS)

ATGCTTGTTGTCACCTCGATAGGTCTTGCAATGAGTAATAAAGATTTAGGCAAAAAGAGCTACCCCTGTTGTGATCAGTTAGGCCAACCAGAGAAAACTCAGGTAGAAGAAGTCAAAAGAGAGCCATCTGCAGACCAGCGTCGGGATGCTGCGCTTGGAGCGTCTCGACGCTGCCTTTCCTTTTCTGAAATAGGCGGCAACAGTTTGCGATTAGGGCTGATTTGGGGACTTCTTTTGGACACCTTGGAGCCGTTAAACAGAGCAAAAACAGAGTCTTTGGAGCTGATTAAGGGAGAGCAAAGTGGAAATCAACCCATTGTTCGTGGGGATCGTGACGAGGACGTTCGGTCTCGGCCTACATAG

Protein sequence

MLVVTSIGLAMSNKDLGKKSYPCCDQLGQPEKTQVEEVKREPSADQRRDAALGASRRCLSFSEIGGNSLRLGLIWGLLLDTLEPLNRAKTESLELIKGEQSGNQPIVRGDRDEDVRSRPT
Homology
The following BLAST results are available for this feature:
BLAST of Spg032893.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg032893.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg032893.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg032893.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..120

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg032893Spg032893gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg032893.1-cdsSpg032893.1-cds-scaffold11:14578299..14578458CDS
Spg032893.1-cdsSpg032893.1-cds-scaffold11:14578599..14578699CDS
Spg032893.1-cdsSpg032893.1-cds-scaffold11:14579292..14579369CDS
Spg032893.1-cdsSpg032893.1-cds-scaffold11:14579529..14579552CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg032893.1Spg032893.1-proteinpolypeptide