Spg032709.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg032709.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold11: 6440578 .. 6444103 (-)
Sequence length	816
RNA-Seq Expression	Spg032709.1
Synteny	Spg032709.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTGTCAAAGAGCTGAGGTTTCCGTAAGTGCGGAAGATGTTATTCTGATGGATAAGGGAATAATTGACACATCGAACCTAGCAAGGCTTCAAAGGACTATGGAAGCACGCCAAGGCGGTTTGGTGTGCGGCATCCACCAAATTCAAGAACAGCTGCAAATGCATTCCAACAGAATGGAGTTTGTCGAAAGGCAATTCCAAACCTTCTGGAATTATGTTAAACGAAGGGACGCTGCACTGAGGAGGGCCTTTCAAACCAATTTTTCCAAACCTTATCCAGCCTTCCCAGTATTCCCTGATGATCTATTGAACCCCTGGATCCCAACGCCGCCGATAGAACAGGAAGGAGATGAGGAGGAAGACGCTAGTCAGGAGGATTGATGAAGAGGAAGTCGTCGAGCGAGCTTTTTTTTTTGTTGAAATATTTTTGTTGCTCGCGTATTCCTAACCCCAATCTCTTTTTGATGTTTTTGCTTGCTGGTTTTTATTTTCTGTTTCTAGGCCACAAAAAATATCTGCTTGATGTAAATCTTTTTCTGTTATTTTTAATGAATTCCCGAAGTTGTTTCTGTTCTATAGCACTGAGCATTCCTAACTTAACTATTTTCTTCTCAATTTTTTAAGCTTTGACTAGTTAGCTTAATTAGATCAAGGTGTTCTGATCTCCAGAAACATTTTGCTTGAGCATTTCTTCTCGCCTGGCCATCGCTGCGAGAAGAAGATTATGAGGTAGTATTGACTTATTTGATCCACCTTAAGCTTAATCTTAGTCCCACGCTTAGTTTAAAATTCAGATAGAAAAAGAATTAAGTTTGTGGGGTATGCATATCATGTTGATTCATTTGGGACAATGAATAATTTAAGTTTGGGGGACTTTTAGTTACTTCGCTTGTTTTGCTCGAGCATTCCTCTCCTTCATAATTATTTTTCTAGGTTGTTGAGTAACCAGGGACATTTGTGACTCCCACAGTTTGTCTTTGCGTCAAAAGATGACCTAGAGAATATTAATATATATATATATATATATATGATTATTTGCTGAAAAGAAGAAATTTTGTGGAAATTTTGCTGAGAAAATTCATAGAGCAAAAGTTTTGAATGATGAATGATGATCTAGCAGTTTTTCTGTCTCCCAGGGCTTAGGTGTGCTTCATTATAAAATGTCGCCATTCTGAGAAGCAAGGGATAGAATAACTAAGGATTTTTTAGCTTAGCAATGAGTATTTAGCCTAGTTAGTGATGAGTTTGAGGCAAGGGTATATTGCACCATAAAGTTGGTCATCCCATGCTTAAGAGCTTATGGTTGTAGGGCTGCTTTAAGTCTGAAGAATAGGAAAATGAAACCCCTTTAAAAATGTGTTTAAATATGTCTGATAATAAAGTTAAGTTGCGGTAAGTTCTTAGGGCTGAGTTAAAGGTGGTGATTATCTGTTCAATGCTGAAAGAATTATTTTGCTGCAACAGTGCTTGGTTGCAGATTGCTCAGGTAAAGGTTGAAGGTAGTGTTGGATTATCTGTTTTGATTAAGTTATGTTATGACTAATGTTTTGAATTCTCAAGGGAAGGTGAGTTAGTATTGCTCGGAACGCGCAATAGTTCAAGTTTGGGGGTATGATAACTCTCCAAAAGGGAGTTATTTAGGCCTTATTTCTATAGTGATTTGTGTGTCATTTGTGTTAGATAAGGTTGCTTTTAGATGAATATTACATGTTTTAACTCATTTAGAAGAGTGGATGCTTTGGAAGTTATTTTGTGTAGAATATAATGTTGAGCGACTTGAGGGAGCAAAATCCGTGATCCAGCAAAGCAAAGAGCAAAACTACCACGTGAGCCACATGTGATTCATTAAATGAGGTGGCGTTAGCTGAATTAATCTCGGATCTAGGAAGCTTGGAGAGCCCTCCACGTCTAAAGATTGACCTAATTGGGGTTCACTCCACTTCTATAAAAGGAAGTAGCCGTCTCAAGTCGAAGATATTCCAAATTCGAGAAAGGAAAGTCTTATTCCATTCGTGGAGGCTTACTTTCCATCTTTGGGAGCCGAATAAAGGAGGGATGATTGGAGACTTCAAGAAGACCATTAGCTACAGATCTATTCAAGGGAATTAACCTTTTCTTGTAATTTCTTGTAGTTATGGATGCACATACTCAGATTGTAGCGTGTATTATTTTGTACTCCATGAACTAAATTTACTTAGGTGTTGGTTAGGATTAATGTAATTTTTGTGCTTCATTCTCTATGCAATATATGTTGATTTGAGCATCTTGATTATTTGTTGTGTCTATTTCTATTTTGTGCCCGCTTGGCCAGCCGGTATAAATATCACCTCTTAGTTTCAGGGATGACTTGAGAGGTGTGTGGCATTTAATCACATTAGACCATTATGTGTTGATGGACGCCAGTAACTAAGTTAGGGATAACCAGTCACCTAGTGCTTGATCGGTAGAGCGTCATTGGACTTGAAACACATTCCAAAAAATCCAAAGTTCTGGGAGGATCCTGCTGATAAGACTGCAAGAGAATTGCCTAATCAATATTATTGCTAGAGCATCTTTTAAAACAATTACAGAAATCCTGACCAATGCCTGTTTCCAATCTGTCTGCTTTATCCGTTTACTTTCTATTCTATCATTTCTTTTGCTTCAGCATTTTATCAAAACCAATCATTTTAACAATCTTGAAACCATTAAAAAGTTACATAAGATAGGTAAAGTGAGAACTATTCAAAACCTCGTGGATACGATAAATACTTATCACTTGTTGCGGATTGTGTTTGCTTGCACAGTATTCTAGAGCTTATTTTTATCATATTCTTAACCCTCTCTAGAAAGCAACAAGTTTTTGGCGCTGAACCCGAGTGTCACCAGTTGCAGTGATCGGCAAGGTGAGATTAACCAACCTCCCATTTACTTTTCTGTCGTTTAATTTCCTGCCATTTACTTTCTCACAATTTTATCTTTTCCTCCAAATTAATCCCTCTCTCTTCAACCCCCCTTCTGTTACCAAACACAAAATAGATTAGAAGTAAACCAGTTGTTCCCTGTGATCGATCCCGACCACTACTGCTACAAGTTAGCTTTGGTAGTCGGTGATTATAAATTTATTTGACACGAGGCTCGACAGCTCATCCTGAAATGTGATATCAGTATCCTATGCGATAGCACCCGAAATGTGCTATTTTATTACCTTTAATCTAATCTTGTTAGTTTGCATTTTACTGTTTTATTGATTGTTTTACAGGATTTCGAGCACAAAAGGCCAGTTAGACCATTATGTCAACTCGGCGCTAACTCGGGAGTTTTAGGATGTTTTCGAGCTATTTTGGAGTCCCTGAGACGATGTGGAGCCAAATGTCTTGACCGGAGCGCTTGGACCTCATCATTGGAGCCAAAAGGATCGAAGGAGAAAATTGAACAAATTGGGCAAACCCGAGAGCAAGCGTCTCGACGCTACAGCGCTACCCCGATTTCAGCCTGCGGACAGAAGGGCCAGTGTCGAGACGCTGGCGATAATTATAAATAG

mRNA sequence

ATGCTGTGTCAAAGAGCTGAGGTTTCCGTAAGTGCGGAAGATGTTATTCTGATGGATAAGGGAATAATTGACACATCGAACCTAGCAAGGCTTCAAAGGACTATGGAAGCACGCCAAGGCGGTTTGGTGTGCGGCATCCACCAAATTCAAGAACAGCTGCAAATGCATTCCAACAGAATGGAGTTTGTCGAAAGGCAATTCCAAACCTTCTGGAATTATGTTAAACGAAGGGACGCTGCACTGAGGAGGGCCTTTCAAACCAATTTTTCCAAACCTTATCCAGCCTTCCCAGTATTCCCTGATGATCTATTGAACCCCTGGATCCCAACGCCGCCGATAGAACAGGAAGGAGATGAGGAGGAAGACGCTAATCAAGGTGTTCTGATCTCCAGAAACATTTTGCTTGAGCATTTCTTCTCGCCTGGCCATCGCTGCGAGAAGAAGATTATGAGGGCTGAGTTAAAGGTGGTGATTATCTGTTCAATGCTGAAAGAATTATTTTGCTGCAACAGTGCTTGGTTGCAGATTGCTCAGGATTTCGAGCACAAAAGGCCAGTTAGACCATTATGTCAACTCGGCGCTAACTCGGGAGTTTTAGGATGTTTTCGAGCTATTTTGGAGTCCCTGAGACGATGTGGAGCCAAATGTCTTGACCGGAGCGCTTGGACCTCATCATTGGAGCCAAAAGGATCGAAGGAGAAAATTGAACAAATTGGGCAAACCCGAGAGCAAGCGTCTCGACGCTACAGCGCTACCCCGATTTCAGCCTGCGGACAGAAGGGCCAGTGTCGAGACGCTGGCGATAATTATAAATAG

Coding sequence (CDS)

ATGCTGTGTCAAAGAGCTGAGGTTTCCGTAAGTGCGGAAGATGTTATTCTGATGGATAAGGGAATAATTGACACATCGAACCTAGCAAGGCTTCAAAGGACTATGGAAGCACGCCAAGGCGGTTTGGTGTGCGGCATCCACCAAATTCAAGAACAGCTGCAAATGCATTCCAACAGAATGGAGTTTGTCGAAAGGCAATTCCAAACCTTCTGGAATTATGTTAAACGAAGGGACGCTGCACTGAGGAGGGCCTTTCAAACCAATTTTTCCAAACCTTATCCAGCCTTCCCAGTATTCCCTGATGATCTATTGAACCCCTGGATCCCAACGCCGCCGATAGAACAGGAAGGAGATGAGGAGGAAGACGCTAATCAAGGTGTTCTGATCTCCAGAAACATTTTGCTTGAGCATTTCTTCTCGCCTGGCCATCGCTGCGAGAAGAAGATTATGAGGGCTGAGTTAAAGGTGGTGATTATCTGTTCAATGCTGAAAGAATTATTTTGCTGCAACAGTGCTTGGTTGCAGATTGCTCAGGATTTCGAGCACAAAAGGCCAGTTAGACCATTATGTCAACTCGGCGCTAACTCGGGAGTTTTAGGATGTTTTCGAGCTATTTTGGAGTCCCTGAGACGATGTGGAGCCAAATGTCTTGACCGGAGCGCTTGGACCTCATCATTGGAGCCAAAAGGATCGAAGGAGAAAATTGAACAAATTGGGCAAACCCGAGAGCAAGCGTCTCGACGCTACAGCGCTACCCCGATTTCAGCCTGCGGACAGAAGGGCCAGTGTCGAGACGCTGGCGATAATTATAAATAG

Protein sequence

MLCQRAEVSVSAEDVILMDKGIIDTSNLARLQRTMEARQGGLVCGIHQIQEQLQMHSNRMEFVERQFQTFWNYVKRRDAALRRAFQTNFSKPYPAFPVFPDDLLNPWIPTPPIEQEGDEEEDANQGVLISRNILLEHFFSPGHRCEKKIMRAELKVVIICSMLKELFCCNSAWLQIAQDFEHKRPVRPLCQLGANSGVLGCFRAILESLRRCGAKCLDRSAWTSSLEPKGSKEKIEQIGQTREQASRRYSATPISACGQKGQCRDAGDNYK

Homology

[Close]

BLAST of Spg032709.1 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.4e-04
Identity = 40/137 (29.20%), Postives = 61/137 (44.53%), Query Frame = 0


Query: 2   LCQRAEVSVSAEDVILMDKGIIDTSNLARL--------------QRTMEARQGGLVCGIH 61
           LC+ A   V+ E   L + G ID   +AR+               R   A        + 
Sbjct: 171 LCRNAPFLVNEEK--LHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAASSSRTNGDVL 230

Query: 62  QIQEQLQMHSNRMEFVERQFQTFWNYVKRRDAALRRAFQTNFSKPYPAFPVFPDDLLNPW 121
           Q  + L+   ++ E   +Q Q FW Y K RD AL++A Q NF++P P FP FP ++L   
Sbjct: 231 QQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPAFPQEILQDL 290

Query: 122 IPTPPIEQEGDEEEDAN 125
                 E E + ++D +
Sbjct: 291 ----DYEYEAESDKDGS 301

The following BLAST results are available for this feature:

BLAST of Spg032709.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg032709.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg032709.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5DXM3	5.4e-04	29.20	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE...	[more]

BLAST of Spg032709.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 46..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 228..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..257

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg032709	Spg032709	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg032709.1-cds	Spg032709.1-cds-scaffold11:6440578..6440859	CDS
Spg032709.1-cds	Spg032709.1-cds-scaffold11:6442615..6442696	CDS
Spg032709.1-cds	Spg032709.1-cds-scaffold11:6443372..6443453	CDS
Spg032709.1-cds	Spg032709.1-cds-scaffold11:6443734..6444103	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg032709.1	Spg032709.1-protein	polypeptide