Spg032614.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg032614.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein NUCLEAR FUSION DEFECTIVE 4
Location	scaffold11: 5759399 .. 5761661 (+)
Sequence length	627
RNA-Seq Expression	Spg032614.1
Synteny	Spg032614.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACTGGGAAGCTGTACGACGAGATGGCGAAGGCGGGGGAAAGTGCCAGTGCGGGGAGGTTTCATTGCGAAGGGAACCACTGTTTCGAACAATCGTTTACGATTTTGGGTGGGTTGACGTTTGTTGTAGCGTTGCTTTCGTTGGTTTTGGTGAGGAGGACGAGCGAGTTTTACAGAGGGGATATATACAAGAAGTTCAGGGAAGATATGGAGACTTTGAAGACGGAAGTGGAGTTTTATCGACTGGATGAGAAGAGGACTAAGATTGGGAATTTGCTTGTGGACAAACATAGCATCAATTTCAAGAGGTGATATGTAATCTAACAAATTTGTGTAGAAAATTTCGGATAATTTTTTAAGTTTTTTTTTTTTTTTCTTTGTGGAAGAAAATAAAGATTATGGTTGTTTGATTTTGTAATGTTTTGATGGGGGAGATAGTTTGAAATAAAAGGGAATTGAAAATGGTGTAATACAAACAAGGAGAAAGTTTTATTATTTTAACATTATTTGGAAAAGAAAAAAAAAAGGAAATGAAATAGAAAGGGAAAATAAAAATTTAAAAGTTAAAAAAAATAATAATAAAATTGGAACTTCAGAAGCTATGATCATAGTTGTTCATGATCCATATTTTATTTGTGTTTTCAAAAATAAAAAAAAAATAAAAAAAATAAAAAACAAGAAAAGCAATGTTCATAATATTTAAACTTTTGGAAGGAAAGAAATAGAATGATCTTCAAAGTCTTTAAATTTGGGAAAAAAATGTCTTTTTGATATCTGAGTTTTGAGGGATAGGTGTGTTTGGTTTTTAAGTCTTTAAAATGTCGTTCAAAAAATTCTCCCTCCCCACTCTCTCTCCTCCCTCCACGTTCTTTCTCTCTTTTCCGTCTTTTCCCCTTCTCCCCACCAACTTAATTTTTAAAAACTAAAAACTAAAAAGAGAACGTTTTGCTATACCTAGATGAGAAACATGATTTGATAGATTAAGTTCACATCCTAGTGGCCAAATAACATGCATGCTTCCAACATAACATAGCAAGAAATTGCATATCAAATTTCATTTGACAATCAACAAGAAATTGCATATCAAATTTCATTTGACCATCAACAAGTGAAAACTAATGAAGTTCTAGGAGAAGGAAGAATGGTTGATCAATTGATTTTTCTAATTTGGAAATGTTGTTGCAGCGTATTGAGAGGGAGGAGGGGAGACTAGAGAGGAAGAAGGAACAGTGGCGAGGAGGGAAAAGGCGAAGAAAATGGGAGGAGGGAGGAGAGATGAGAGAGAATGGGATAGAGAGGTGAGAGTTTTTTTAAAAAAAAAAATCATTGAAATACACTTTTGGTCCCTGAGATTTGGGTTAAGTTACATTTTAGTCATTGAGTTTTAAAATTCAACAAAATTACCCTGAGGTTTGAGATAAGGAGCAATTTGGTCCCTGTCATCCATTTTGTCGTTAAATACTAACAGACTCCTGATGTGGCCATATTTTTTTAAGGGAAAAATACACTTTTGGTCCCTGAGGTTTGAGTTACGTTTCATTTTGGTCCCTAAGTTTTCAAACTCAACAATTTAGTCCCTGAGGTTTGGATTTTGCTTCATTTTGGTCCCTCCATCCACTTTTCCGTTAAATTTTAAGTGTTTGTTGACGTGGCACTAATTTTTTTATTAAAAAATTATTTCTTAAATTTTAAAAATAAAATAATATAAATTCATTTAAAAATATTATTTTTTTTATTCTTTCTCCTTCTCTTTCTTCTTATCAAGACTTCAGTTTCATCTTCTTCTTCACCCGTCACCGGAGTGCTGTCGTCACCGTCACGGAGCGCCGTCGTCACCGTCGCTGGAGTGCCCATATTTTTCCTCCCTTTTTTCTCCTCTTTTCTTCTTCTTCTCACTCCTCTCTTTTTCTTCCCTCTTCCTCCCTTCCCTTTTTTTCTTTGGCTGGTTTTTTTTTTAGGCCCTTCGAATATGAGATCTAGAACGAACTAGATCTGGGCTAGTTCCGTTGGCAGCAGCGATTAACCAACCTCCGGCGAGATGCATAGGCTTCATCTTCCTCTTCCAGTCGGAACTCGCGGCGAATCGCGGACTAGAAGCAGCAGAGACCCACCCGTTCTTCCTCCCTCCCACTGCCTCTCGCCGACCGTATCGCCATCGTCACCGGCGCCTCCTAAGGGATCGGTCGTGCCATCGCCGTCCACCCCCACTCCCTCGGAGCAAACCTCATCCGCCAATCGATCTCCTCGCCTCGCTGTCTAG

mRNA sequence

ATGGTGACTGGGAAGCTGTACGACGAGATGGCGAAGGCGGGGGAAAGTGCCAGTGCGGGGAGGTTTCATTGCGAAGGGAACCACTGTTTCGAACAATCGTTTACGATTTTGGGTGGGTTGACGTTTGTTGTAGCGTTGCTTTCGTTGGTTTTGGTGAGGAGGACGAGCGAGTTTTACAGAGGGGATATATACAAGAAGTTCAGGGAAGATATGGAGACTTTGAAGACGGAAGTGGAGTTTTATCGACTGGATGAGAAGAGGACTAAGATTGGGAATTTGCTTGTGGACAAACATAGCATCAATTTCAAGAGGGAGGAGGGGAGACTAGAGAGGAAGAAGGAACAGTGGCGAGGAGGGAAAAGGCGAAGAAAATGGGAGGAGGGAGGAGAGATGAGAGAGAATGGGATAGAGAGGCTTCATCTTCCTCTTCCAGTCGGAACTCGCGGCGAATCGCGGACTAGAAGCAGCAGAGACCCACCCGTTCTTCCTCCCTCCCACTGCCTCTCGCCGACCGTATCGCCATCGTCACCGGCGCCTCCTAAGGGATCGGTCGTGCCATCGCCGTCCACCCCCACTCCCTCGGAGCAAACCTCATCCGCCAATCGATCTCCTCGCCTCGCTGTCTAG

Coding sequence (CDS)

ATGGTGACTGGGAAGCTGTACGACGAGATGGCGAAGGCGGGGGAAAGTGCCAGTGCGGGGAGGTTTCATTGCGAAGGGAACCACTGTTTCGAACAATCGTTTACGATTTTGGGTGGGTTGACGTTTGTTGTAGCGTTGCTTTCGTTGGTTTTGGTGAGGAGGACGAGCGAGTTTTACAGAGGGGATATATACAAGAAGTTCAGGGAAGATATGGAGACTTTGAAGACGGAAGTGGAGTTTTATCGACTGGATGAGAAGAGGACTAAGATTGGGAATTTGCTTGTGGACAAACATAGCATCAATTTCAAGAGGGAGGAGGGGAGACTAGAGAGGAAGAAGGAACAGTGGCGAGGAGGGAAAAGGCGAAGAAAATGGGAGGAGGGAGGAGAGATGAGAGAGAATGGGATAGAGAGGCTTCATCTTCCTCTTCCAGTCGGAACTCGCGGCGAATCGCGGACTAGAAGCAGCAGAGACCCACCCGTTCTTCCTCCCTCCCACTGCCTCTCGCCGACCGTATCGCCATCGTCACCGGCGCCTCCTAAGGGATCGGTCGTGCCATCGCCGTCCACCCCCACTCCCTCGGAGCAAACCTCATCCGCCAATCGATCTCCTCGCCTCGCTGTCTAG

Protein sequence

MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYRGDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFKREEGRLERKKEQWRGGKRRRKWEEGGEMRENGIERLHLPLPVGTRGESRTRSSRDPPVLPPSHCLSPTVSPSSPAPPKGSVVPSPSTPTPSEQTSSANRSPRLAV

Homology

[Close]

BLAST of Spg032614.1 vs. NCBI nr
Match: XP_038895750.1 (uncharacterized protein LOC120083915 [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 3.7e-39
Identity = 82/104 (78.85%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTGKLYDE+A+ G  +S  +FHC+GNHC+EQSF IL GLTF+VA++SL+LV+RT EFY 
Sbjct: 499 MVTGKLYDEVAQLG--SSPNKFHCQGNHCYEQSFLILSGLTFIVAMISLILVKRTREFYG 558

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFKR 105
           GDIYKKFREDMETLKTE+EFYRLDEKRT+IGNLLVDKHSINFKR
Sbjct: 559 GDIYKKFREDMETLKTEMEFYRLDEKRTRIGNLLVDKHSINFKR 600

[Close]

BLAST of Spg032614.1 vs. NCBI nr
Match: XP_008464809.1 (PREDICTED: uncharacterized protein LOC103502605 [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 7.7e-37
Identity = 78/104 (75.00%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTGKLYDE+A+ G  ++  + HC G HC+EQSF IL GLTF+VA++SL+LV+RT EFYR
Sbjct: 495 MVTGKLYDEVARIG--SNPNKSHCVGTHCYEQSFLILAGLTFIVAMISLILVQRTREFYR 554

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFKR 105
           GDIYKKF+EDMETLKTEVEFYR+DEKRT+IGNLLVDKHSINFK+
Sbjct: 555 GDIYKKFKEDMETLKTEVEFYRVDEKRTRIGNLLVDKHSINFKK 596

[Close]

BLAST of Spg032614.1 vs. NCBI nr
Match: KAA0051898.1 (protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis melo var. makuwa] >TYJ99888.1 protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 7.7e-37
Identity = 78/104 (75.00%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTGKLYDE+A+ G  ++  + HC G HC+EQSF IL GLTF+VA++SL+LV+RT EFYR
Sbjct: 520 MVTGKLYDEVARIG--SNPNKSHCVGTHCYEQSFLILAGLTFIVAMISLILVQRTREFYR 579

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFKR 105
           GDIYKKF+EDMETLKTEVEFYR+DEKRT+IGNLLVDKHSINFK+
Sbjct: 580 GDIYKKFKEDMETLKTEVEFYRVDEKRTRIGNLLVDKHSINFKK 621

[Close]

BLAST of Spg032614.1 vs. NCBI nr
Match: XP_023520963.1 (uncharacterized protein LOC111784524 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 8.5e-36
Identity = 80/103 (77.67%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTG+LYDEMAKA  SA  G  HCEG+ C+EQSF IL GLTF VAL+SL+LV RT EFYR
Sbjct: 337 MVTGRLYDEMAKA--SAGIGGLHCEGHSCYEQSFVILAGLTFFVALVSLILVERTREFYR 396

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFK 104
           GDIYKKFREDME+LKT++EFY LDEKRT+IGNLLVDKHSIN K
Sbjct: 397 GDIYKKFREDMESLKTKMEFYTLDEKRTRIGNLLVDKHSINIK 437

[Close]

BLAST of Spg032614.1 vs. NCBI nr
Match: XP_023520961.1 (uncharacterized protein LOC111784522 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 8.5e-36
Identity = 80/103 (77.67%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTG+LYDEMAKA  SA  G  HCEG+ C+EQSF IL GLTF VAL+SL+LV RT EFYR
Sbjct: 470 MVTGRLYDEMAKA--SAGIGGLHCEGHSCYEQSFVILAGLTFFVALVSLILVERTREFYR 529

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFK 104
           GDIYKKFREDME+LKT++EFY LDEKRT+IGNLLVDKHSIN K
Sbjct: 530 GDIYKKFREDMESLKTKMEFYTLDEKRTRIGNLLVDKHSINIK 570

[Close]

BLAST of Spg032614.1 vs. ExPASy TrEMBL
Match: A0A5D3BP48 (Protein NUCLEAR FUSION DEFECTIVE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2042G00080 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.7e-37
Identity = 78/104 (75.00%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTGKLYDE+A+ G  ++  + HC G HC+EQSF IL GLTF+VA++SL+LV+RT EFYR
Sbjct: 520 MVTGKLYDEVARIG--SNPNKSHCVGTHCYEQSFLILAGLTFIVAMISLILVQRTREFYR 579

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFKR 105
           GDIYKKF+EDMETLKTEVEFYR+DEKRT+IGNLLVDKHSINFK+
Sbjct: 580 GDIYKKFKEDMETLKTEVEFYRVDEKRTRIGNLLVDKHSINFKK 621

[Close]

BLAST of Spg032614.1 vs. ExPASy TrEMBL
Match: A0A1S3CMG9 (uncharacterized protein LOC103502605 OS=Cucumis melo OX=3656 GN=LOC103502605 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.7e-37
Identity = 78/104 (75.00%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTGKLYDE+A+ G  ++  + HC G HC+EQSF IL GLTF+VA++SL+LV+RT EFYR
Sbjct: 495 MVTGKLYDEVARIG--SNPNKSHCVGTHCYEQSFLILAGLTFIVAMISLILVQRTREFYR 554

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFKR 105
           GDIYKKF+EDMETLKTEVEFYR+DEKRT+IGNLLVDKHSINFK+
Sbjct: 555 GDIYKKFKEDMETLKTEVEFYRVDEKRTRIGNLLVDKHSINFKK 596

[Close]

BLAST of Spg032614.1 vs. ExPASy TrEMBL
Match: A0A6J1GAT5 (uncharacterized protein LOC111452462 OS=Cucurbita moschata OX=3662 GN=LOC111452462 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.2e-35
Identity = 78/104 (75.00%), Postives = 91/104 (87.50%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MV GKLYDEMA  G +AS  +FHCEG+ CFEQSFTIL GLTFVVA++SLVLVRRT+EFYR
Sbjct: 497 MVIGKLYDEMAMTGSNAS--KFHCEGSKCFEQSFTILAGLTFVVAMVSLVLVRRTAEFYR 556

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFKR 105
           GDIY+KFREDM++LKTE+EFY L+ KR KIGNL  DKH+INFK+
Sbjct: 557 GDIYQKFREDMDSLKTEMEFYPLESKRMKIGNLTFDKHAINFKK 598

[Close]

BLAST of Spg032614.1 vs. ExPASy TrEMBL
Match: A0A6J1I5D1 (uncharacterized protein LOC111469394 OS=Cucurbita maxima OX=3661 GN=LOC111469394 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 78/103 (75.73%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTG+LYDEMAKA  ++  G  HCEG+ C+EQSF IL GLTF VAL+SL+LV RT EFYR
Sbjct: 470 MVTGRLYDEMAKA--TSGIGGLHCEGHSCYEQSFVILAGLTFFVALVSLILVGRTREFYR 529

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFK 104
           GDIYKKFREDME+LKT++EFY LD+KRT+IGNLLVDKHSINFK
Sbjct: 530 GDIYKKFREDMESLKTKMEFYTLDDKRTRIGNLLVDKHSINFK 570

[Close]

BLAST of Spg032614.1 vs. ExPASy TrEMBL
Match: A0A6J1HYZ1 (uncharacterized protein LOC111469392 OS=Cucurbita maxima OX=3661 GN=LOC111469392 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 78/103 (75.73%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MVTGKLYDEMAKAGESASAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRTSEFYR 60
           MVTG+LYDEMAKA  ++  G  HCEG+ C+EQSF IL GLTF VAL+SL+LV RT EFYR
Sbjct: 470 MVTGRLYDEMAKA--TSGIGGLHCEGHSCYEQSFVILAGLTFFVALVSLILVGRTREFYR 529

Query: 61  GDIYKKFREDMETLKTEVEFYRLDEKRTKIGNLLVDKHSINFK 104
           GDIYKKFREDME+LKT++EFY LD+KRT+IGNLLVDKHSINFK
Sbjct: 530 GDIYKKFREDMESLKTKMEFYTLDDKRTRIGNLLVDKHSINFK 570

[Close]

BLAST of Spg032614.1 vs. TAIR 10
Match: AT2G28120.1 (Major facilitator superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 8.5e-10
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 0


Query: 2   VTGKLYDEMAKAGESA------SAGRFHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRT 61
           VTG LYD+ A    +A            C G+ C++  F IL  +TF  AL+SL L  RT
Sbjct: 483 VTGMLYDKEALKQLTARGLTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRT 542

Query: 62  SEFYRGDIYKKFREDMET 74
            EFY+GDIYKKFRE  E+
Sbjct: 543 REFYKGDIYKKFRESPES 560

[Close]

BLAST of Spg032614.1 vs. TAIR 10
Match: AT2G39210.1 (Major facilitator superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 9.4e-09
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 2   VTGKLYD-----EMAKAGESASAGR-FHCEGNHCFEQSFTILGGLTFVVALLSLVLVRRT 61
           V G LYD     +    G++   G+  +C G  CF+ SF I+  +T    L+S+VLV RT
Sbjct: 492 VAGYLYDVEAGKQYKALGKTRVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRT 551

Query: 62  SEFYRGDIYKKFREDMETLKTEVE 80
            +FY+ DIYKKFRE  + L  E+E
Sbjct: 552 KKFYKSDIYKKFRE--KALAAEME 573

The following BLAST results are available for this feature:

BLAST of Spg032614.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895750.1	3.7e-39	78.85	uncharacterized protein LOC120083915 [Benincasa hispida]	[more]
XP_008464809.1	7.7e-37	75.00	PREDICTED: uncharacterized protein LOC103502605 [Cucumis melo]	[more]
KAA0051898.1	7.7e-37	75.00	protein NUCLEAR FUSION DEFECTIVE 4 [Cucumis melo var. makuwa] >TYJ99888.1 protei...	[more]
XP_023520963.1	8.5e-36	77.67	uncharacterized protein LOC111784524 [Cucurbita pepo subsp. pepo]	[more]
XP_023520961.1	8.5e-36	77.67	uncharacterized protein LOC111784522 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg032614.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg032614.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BP48	3.7e-37	75.00	Protein NUCLEAR FUSION DEFECTIVE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3CMG9	3.7e-37	75.00	uncharacterized protein LOC103502605 OS=Cucumis melo OX=3656 GN=LOC103502605 PE=...	[more]
A0A6J1GAT5	1.2e-35	75.00	uncharacterized protein LOC111452462 OS=Cucurbita moschata OX=3662 GN=LOC1114524...	[more]
A0A6J1I5D1	1.6e-35	75.73	uncharacterized protein LOC111469394 OS=Cucurbita maxima OX=3661 GN=LOC111469394...	[more]
A0A6J1HYZ1	1.6e-35	75.73	uncharacterized protein LOC111469392 OS=Cucurbita maxima OX=3661 GN=LOC111469392...	[more]

BLAST of Spg032614.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28120.1	8.5e-10	46.15	Major facilitator superfamily protein	[more]
AT2G39210.1	9.4e-09	41.67	Major facilitator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 64..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..208
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 2..75
None	No IPR available	PANTHER	PTHR21576:SF29	PROTEIN NUCLEAR FUSION DEFECTIVE 4	coord: 2..75

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg032614	Spg032614	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg032614.1-cds	Spg032614.1-cds-scaffold11:5759399..5759709	CDS
Spg032614.1-cds	Spg032614.1-cds-scaffold11:5760598..5760699	CDS
Spg032614.1-cds	Spg032614.1-cds-scaffold11:5761448..5761661	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg032614.1	Spg032614.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity