Spg030297.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg030297.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCalpain-type cysteine protease DEK1
Locationscaffold10: 21576579 .. 21578656 (-)
Sequence length555
RNA-Seq ExpressionSpg030297.1
SyntenySpg030297.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAGGAGCGAATTCCGTCTTGCGAAACTATGTCCCCAGCTATCTTTTCGATCTTATCCCCAACATGGTAGGCTTGTTGAGTCGGCGATGCTGGCCACTCTCACCCATGCAGATCAAAGGATAATCTCGTATAAACAGGATTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGGTCATCTATAAGAAATAGTCAGTTTCTTTAGTAAACGGCGTTATAAAGAGAAAGTGCCTTATTTCGTGGTCTAGTCTTATGCAAACTCATTGTATAGGACGCCCCCACTCGCATGTCTCCACATCAACGACTTAGGATCTCATCGTTTGTACTTAATACAAAGTGGGCCGCGTCCATAGTGTCCCCAGGATAAGGCACCCAACCCTATCCTTATACTATAGACTATTTTGACTATAAACTTGAACTTGATCCTATGATATGTCTCTACATATAGTTCGAGTATTCATTTTATAGCCAAGGATCTTAGTTTATTTGATTTAGGTTAATCAATCGCAATTTACATATTCAATAACGTCTTTTACTGAATAACTCCAATAACGTCTTTATTGGAAATAGAAAACGTTTAATGATTTACAAGCTACGAGTTTATAGGACATTAAACCCAACACTTTTTTTTTCATTCTGGTGGTGGACGTTTTGAGCAGATTAATCATGACTTGAGTGGATAAAAGGGTGATTGAGGGCTTCAAGGTGGGGTAAAAAATCATTAACCTAACCCATCTTCAATTTGCTGATGATACCCTTTTCTTCTGCTCGTTTAAGGAAGAGTCATTCTAGAATTTAAATTGTTTCCTCTCCTTCTTTGAAGCTATCTCAGGTCTCAAGATTAATCGTCAAAAATGTAGTATTTTTGGGGTTAATTGTTAGGATTCTAAGTTGGGTCATTAGACGTCTTTGGTGGGGTGCGAGGTTAGTCAACTTCCCTACTCGTACCTTGGGCTCCCCCTGGGTGGTAATCTGAGATCGGTGGTCTTTTGGAATCCAATAGTGGAAAAGGTTCAAAGCAGTCGTCTTCCTGGAAGAAAGCCTTTTTCTCTAAAGGGGGGGATTGACATTGATTCAGTCAATTTTAAATGGGATTCCACTCTACTTTCTTTCCCTTTTTAGGTTAGCCAGATCTATGTGTAGAAATTTGGAAGGGCTCATGAGAAACTTTCTGTAGAAAGGTGTGGACGAGAGGGGAGGGGCTTTTGGGAAGTTGTTTCTAATCCCAAGGATATGGGAGGGTTTTAGGTATCAGTAACCTGAGGTATCAGAACGAGGCCCTTTTGGGAAAATGGTTATGGTGCTACTTTAATGAGCCAAATGCTTTGTGGTGGAAGGTTATTGTGAATTTGTATGGTCCGCACCTGTTTGAGTGGATTTCTAGTGGTAGGTTGAAAGGATCTAGCAAAAACCTTTGAGCATTATTTTCATCGGCTTTATCTTTTGTCGGAAAAGTGGTTAGATTCGGTACCTTCTATCTTCCCTGATTATGATTTCTCTTCTCCTTCCCTAGACGTTTGTCGCTCCCTCACTGATCGAGAAGCGACAGAGATCTCTTGCCTTCTTTCCTTGTTGGTTAACCAGTCGTTTCACCATGGGGGTAGGGACACTACGTTCTTGACCCCTGAGCCTTATGCGGGCTTCTCTTGTGCCTCTTTTTTTCGTCTCTTTCTTCTCCCCTTCCTCCTATCGAAGCATCCATTTTTTTCCTCTTTGTGGAAGGTTAAAGTCTCTAAGAAAGTAAAGTTCTTTGCCTGGGAAGTTTTACATGGTCAAGTGAGCACTCAGAATCAAATCCAAACGTTCTTTTCTCTCATGTTGCGGCCGTAGTAGTGTGTTCTTTGTAGGAATCAGGAGGAGCACCTTCATCACTTACTTTCGGATTGTCAGTTTTCCTGCTCCATATGGAGTCAGTTCTTCAGAGCTTTTGGGGTTGCTTTGGCTCGTAACATTGTTTGTTCTTCTATTGTTGAGGAAGTTCTTTGGCATCCCCCTTTCCATGACAAAGGGAGAGTTCTTTGGCAGGCTTGCGTTTTTGCTATTTCTGGGGTATTTGGCTTGTGAGGAATAG

mRNA sequence

ATGGGTAGGAGCGAATTCCGTCTTGCGAAACTATGTCCCCAGCTATCTTTTCGATCTTATCCCCAACATGGTAGGCTTGTTGAGTCGGCGATGCTGGCCACTCTCACCCATGCAGATCAAAGGATAATCTCGTATAAACAGGATTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGACGTTTGTCGCTCCCTCACTGATCGAGAAGCGACAGAGATCTCTTGCCTTCTTTCCTTGTTGGTTAACCAGTCGTTTCACCATGGGGGTAGGGACACTACGTTCTTGACCCCTGAGCCTTATGCGGGCTTCTCTTGTGCCTCTTTTTTTCGAATCAGGAGGAGCACCTTCATCACTTACTTTCGGATTGTCAGTTTTCCTGCTCCATATGGAGTCAGTTCTTCAGAGCTTTTGGGGTTGCTTTGGCTCGTAACATTGTTTGTTCTTCTATTGTTGAGGAAGTTCTTTGGCATCCCCCTTTCCATGACAAAGGGAGAGTTCTTTGGCAGGCTTGCGTTTTTGCTATTTCTGGGGTATTTGGCTTGTGAGGAATAG

Coding sequence (CDS)

ATGGGTAGGAGCGAATTCCGTCTTGCGAAACTATGTCCCCAGCTATCTTTTCGATCTTATCCCCAACATGGTAGGCTTGTTGAGTCGGCGATGCTGGCCACTCTCACCCATGCAGATCAAAGGATAATCTCGTATAAACAGGATTTCATAGTTAGCTCAGGATTAAGAACGAGTTACCTAGACGTTTGTCGCTCCCTCACTGATCGAGAAGCGACAGAGATCTCTTGCCTTCTTTCCTTGTTGGTTAACCAGTCGTTTCACCATGGGGGTAGGGACACTACGTTCTTGACCCCTGAGCCTTATGCGGGCTTCTCTTGTGCCTCTTTTTTTCGAATCAGGAGGAGCACCTTCATCACTTACTTTCGGATTGTCAGTTTTCCTGCTCCATATGGAGTCAGTTCTTCAGAGCTTTTGGGGTTGCTTTGGCTCGTAACATTGTTTGTTCTTCTATTGTTGAGGAAGTTCTTTGGCATCCCCCTTTCCATGACAAAGGGAGAGTTCTTTGGCAGGCTTGCGTTTTTGCTATTTCTGGGGTATTTGGCTTGTGAGGAATAG

Protein sequence

MGRSEFRLAKLCPQLSFRSYPQHGRLVESAMLATLTHADQRIISYKQDFIVSSGLRTSYLDVCRSLTDREATEISCLLSLLVNQSFHHGGRDTTFLTPEPYAGFSCASFFRIRRSTFITYFRIVSFPAPYGVSSSELLGLLWLVTLFVLLLLRKFFGIPLSMTKGEFFGRLAFLLFLGYLACEE
Homology
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BLAST of Spg030297.1 vs. ExPASy TrEMBL
Match: A0A5D3CI74 (Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00980 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-04
Identity = 33/96 (34.38%), Postives = 46/96 (47.92%), Query Frame = 0 

Query: 17  FRSYPQHGRLVESAMLATLTHADQRIISYKQDFIVSSGLRTSY-LDVCRSLTDREATEIS 76
           F   P  G      +   L H       +  DF+V +G   S+     R+L+DRE + + 
Sbjct: 129 FMGRPLGGERPLCGLFPCLYHLSSLKNHFMADFLVWNGNSCSFSFGFRRALSDRETSNVV 188

Query: 77  CLLSLLVNQSFHHGGRDTTFLTPEPYAGFSCASFFR 112
            L+SLL + SF  G RD T  +P P  GF C SFF+
Sbjct: 189 ALISLLESHSFRLGRRDVTVWSPFPLEGFLCKSFFQ 224

The following BLAST results are available for this feature:
BLAST of Spg030297.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg030297.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg030297.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CI746.2e-0434.38Calpain-type cysteine protease DEK1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Spg030297.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg030297Spg030297gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg030297.1-cdsSpg030297.1-cds-scaffold10:21576579..21576802CDS
Spg030297.1-cdsSpg030297.1-cds-scaffold10:21576987..21577136CDS
Spg030297.1-cdsSpg030297.1-cds-scaffold10:21578476..21578656CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg030297.1Spg030297.1-proteinpolypeptide