Spg030176.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg030176.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon protein
Location	scaffold6: 14592228 .. 14595239 (-)
Sequence length	1062
RNA-Seq Expression	Spg030176.1
Synteny	Spg030176.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAAAGGGGGAGAGAGATGGACTACAAAGTTGTAGTGAATTGTGTGTTTTGGGATGATTCTAAACCTACACCAAAGGCCTCTATTTATAGGGATTCTTGGCCTTCAATTCGTGGTAGAATGGTGCTGAATTGGGTCTTCAAACATGGAAAATTTCAGCCAAATTTGGAAAATTTCAATTCTGGAAAACTGCCTAGCGTCGCGACGCTGTGCAGCAAGCGTCTCGACGCTGTCCCTTCAATTTTGGAAAATATTTCTTGGATTGCCCTAGCGTCTCGACTCTGTGAGGCAAGCATCTCGACGCTGTAGCGTCTCGACTCTTATGATGAGCGTCTCGACGCTGATGAAGCTCCAAGGGCAGGATGATCATTTTACGCTCCGGTTTCGCTCGTTTAAGCCCCGAATCGCTTCCAAGGCTCCGGTGAGGACCTATAGACATATTATACTCAGTTTAAAGCATTTTTCGCAAGGAATTCAACTAAGATAAGCAAATTGGGAGATTATAAGTGTGTAATAAATTGGTCTTATCACTAGGATGTACATATGTGTGAATTTGTAAATGTCTTTTTTTTTTTTAAATGTCTTTAACAACCTGTATTTTGAATGGAAATGCAATGGATGTCAACTGTTTTTATCCTGATATATTAATCTTGACTCGTACGAACTTCGTGATGTGTTGTTTGTTTTGTTTATATGATTATGTTGATCTAATTCATGATTGCATATGCAGATGGCTGCATCGGCGTCAACTTCGAAGAAGGAGAGACATGTTGGACACCGGAGAATGACGCAATCCTCGTGCAATGCCTAGTCCACTTGGTGCAAATAGGATGTTGGCACGAAGATAATGGGACATTTCACCCAGGATTCCATAACCAAATCGGGAAGATGATGAAAGAAAGATTGTTAGGCTGCAACATCGTTGTCAACCCGAATATTGAGTCCAAGGTCAAGCTGCAAAAAAAAACAATACGTGGCCATTGCTGAGATGATGGGACTAGATTGTAGTGGTTTCGGTTGGAACGAGGAGAGGAAGTGCATTGAGGCGGAGAAGGATATCTTTGATGCGTGGGTCGAGGTAAGGCAACTGCGATGATATTTATACCCAACCATTTATTTACCAAACATTCGCTAACGAAATGACGACGTTTCACGTGCAGGGACACCCACGAGCTAAGGGCCTCCGTAACCGGCCATTCCCTTGGTTTAACGATTTGGCCCTGGTGTTTGGGAAGGACAGCGCGAGAGGGGGGAGAGCCCACACTCCAATTGAGATTACACCGAAACCGGAACCGATAGCCGATCTTGAAGAAGACATGAACGTGGATGATAGCGAGCATAGCAAGCTATTTTTTCTATCTATTTTAGTTAGTCTTTGAGATTAAATTGACCAAAATTATGCACTTTAATGTTTATTTTGTAGGAAATTGACTTTTGGAGCTAAATCGAGAAAATGAAGTTGATCGGTTGTTCGGGACGCTAAAAGAAGCCAAAGAAACGAAAAGAATCAAAGTTGGACGCTTGACAAAGTGGGCGAACATGAGAGCTAGCGTCGAGACACTAGAGATTTTCCATAAGTGATGGGCGAAAAAGAGGCCAGCGTCTCGACGCTGGTGGTTTTATTCTTTTTTTGTTTTGGTAGCAGCAGGACAGCGTCGAGACGCTGTCGACCAGATTCCTATAAATTCATTCTTAATTGCTACGACCAAGGGGAGTCCAATTTGAGAGATTTTAGCCCTAATTTCAACTAGAGACCTTCTGTGGGAGCCGAAGGAAGGCCAAGGAGTGGGAACCAAACTTGAAGACGTGGAGATCGTGACAGAGACGTCCCGGGTTCAACGGATTCAAGAGTTTTCCTTATTTTTCCTTATCTTTAGTTAAATTCTATGGTTTTATCATGTTTATTTTATATCATAACGCCGAGTATGAGTAGCTAAGCGTGTTTCTTAGGGATTGATGTAGTCGTTTATGTTTATGGATTAATTTTTGGGATGTTTTGTGCACTTGTTTTATGTATGCAATCATGTTTGAATGCTTTCAATTAATTGGCCACTAGTTGAATGATCTAAGTGTTGAATCTTGCTCGGGAGAGGGGGTTTAGCATAGACTTATTTAAGATTGCATGACTAAAGGAGAAATTCTAAGATCGTGACGGAATTTAGAATAGCTTTAGAAATTGTCAAAAGAACTAAAAATCTTGCATGTTAATGAACTTAGATAGGGATATCAAGTTAATTATATACATGAGAATCAATTATGCTCGGGAGAGATAGTTGTGATTAAAGGTTCTTAGACTCATAAATTAATTGCACGTTACAATTCATTCCTGTTAATTAATCCTAAACTAAATTGACGAAATCATTACCTAAGAATTCTTTCAATTAAATCTCAAATCTTTAATTTGCATCACCTTTGTTTTCTAAATTTCACTATTTTTCGGTCCCTAAATAAAATTGAGCAAAAGTATTCGCGGTACTTAGTTTAACTTAAAACCCAATCCAGAGGACGACATTCGATTTTACAAATCACTATATTATTACTTGACTCGTGCGATTGCGGTAGGAAAAATCCACATCAGTGGACTACGAAGATTGCTACGTCCTCAGTCCACCAGTTATTGATCCCACGCTCGGAGAAGAATTTTGTGGGGCATCGATTGGTAGAGCATGTGGAGCAAGATCGTCTAGGACACCGCATAGCAAACGATTGTCCTTGGGGAACATGACTGAGGTCTTAGAGAATGGATTCCAACTGACTACACAACAGAATGAAAAGATTACACTGTAGCCGACGAGGAGGGATGAGATGGAGAGAAATCGTCGGAAGGAGTTGTATGCAGAGCTACAGTCGATACCTGGAGTGTCTATGGGCGACGACTTGGTGGTCGCATGGGCACTACTTTCTTATGAGAACATGATGACTCACTTCATGGACTTCCCTCCGGAGTGGAAGTATGACTACTGCATGGAAGTCCTTGGTAGGGCACCCACACAACCCAAGCAACCATGA

mRNA sequence

ATGGTGGAAAGGGGGAGAGAGATGGACTACAAAGTTGTAGTGAATTGTGTGTTTTGGGATGATTCTAAACCTACACCAAAGGCCTCTATTTATAGGGATTCTTGGCCTTCAATTCGTGGTAGAATGGTGCTGAATTGGGTCTTCAAACATGGAAAATTTCAGCCAAATTTGGAAAATTTCAATTCTGGAAAACTGCCTAGCGTCGCGACGCTGTGCAGCAAGCGTCTCGACGCTGTCCCTTCAATTTTGGAAAATATTTCTTGGATTGCCCTAGCGTCTCGACTCTATGGCTGCATCGGCGTCAACTTCGAAGAAGGAGAGACATGTTGGACACCGGAGAATGACGCAATCCTCGTGCAATGCCTAGTCCACTTGGTGCAAATAGGATATTGTAGTGGTTTCGGTTGGAACGAGGAGAGGAAGTGCATTGAGGCGGAGAAGGATATCTTTGATGCGTGGGTCGAGGGACACCCACGAGCTAAGGGCCTCCGTAACCGGCCATTCCCTTGGTTTAACGATTTGGCCCTGGTGTTTGGGAAGGACAGCGCGAGAGGGGGGAGAGCCCACACTCCAATTGAGATTACACCGAAACCGGAACCGATAGCCGATCTTGAAGAAGACATGAACGTGGATGATAGCGAGCATAGCAAGCTATTTTTTCTATCTATTTTAGAAAAATCCACATCAGTGGACTACGAAGATTGCTACGTCCTCAGTCCACCAGTTATTGATCCCACGCTCGGAGAAGAATTTTGTGGGGCATCGATTGGTAGAGCATGTGGAGCAAGATCGTCTAGGACACCGCATAGCAAACGATTGTCCTTGGGGAACATGACTGAGCCGACGAGGAGGGATGAGATGGAGAGAAATCGTCGGAAGGAGTTGTATGCAGAGCTACAGTCGATACCTGGAGTGTCTATGGGCGACGACTTGGTGGTCGCATGGGCACTACTTTCTTATGAGAACATGATGACTCACTTCATGGACTTCCCTCCGGAGTGGAAGTATGACTACTGCATGGAAGTCCTTGGTAGGGCACCCACACAACCCAAGCAACCATGA

Coding sequence (CDS)

ATGGTGGAAAGGGGGAGAGAGATGGACTACAAAGTTGTAGTGAATTGTGTGTTTTGGGATGATTCTAAACCTACACCAAAGGCCTCTATTTATAGGGATTCTTGGCCTTCAATTCGTGGTAGAATGGTGCTGAATTGGGTCTTCAAACATGGAAAATTTCAGCCAAATTTGGAAAATTTCAATTCTGGAAAACTGCCTAGCGTCGCGACGCTGTGCAGCAAGCGTCTCGACGCTGTCCCTTCAATTTTGGAAAATATTTCTTGGATTGCCCTAGCGTCTCGACTCTATGGCTGCATCGGCGTCAACTTCGAAGAAGGAGAGACATGTTGGACACCGGAGAATGACGCAATCCTCGTGCAATGCCTAGTCCACTTGGTGCAAATAGGATATTGTAGTGGTTTCGGTTGGAACGAGGAGAGGAAGTGCATTGAGGCGGAGAAGGATATCTTTGATGCGTGGGTCGAGGGACACCCACGAGCTAAGGGCCTCCGTAACCGGCCATTCCCTTGGTTTAACGATTTGGCCCTGGTGTTTGGGAAGGACAGCGCGAGAGGGGGGAGAGCCCACACTCCAATTGAGATTACACCGAAACCGGAACCGATAGCCGATCTTGAAGAAGACATGAACGTGGATGATAGCGAGCATAGCAAGCTATTTTTTCTATCTATTTTAGAAAAATCCACATCAGTGGACTACGAAGATTGCTACGTCCTCAGTCCACCAGTTATTGATCCCACGCTCGGAGAAGAATTTTGTGGGGCATCGATTGGTAGAGCATGTGGAGCAAGATCGTCTAGGACACCGCATAGCAAACGATTGTCCTTGGGGAACATGACTGAGCCGACGAGGAGGGATGAGATGGAGAGAAATCGTCGGAAGGAGTTGTATGCAGAGCTACAGTCGATACCTGGAGTGTCTATGGGCGACGACTTGGTGGTCGCATGGGCACTACTTTCTTATGAGAACATGATGACTCACTTCATGGACTTCCCTCCGGAGTGGAAGTATGACTACTGCATGGAAGTCCTTGGTAGGGCACCCACACAACCCAAGCAACCATGA

Protein sequence

MVERGREMDYKVVVNCVFWDDSKPTPKASIYRDSWPSIRGRMVLNWVFKHGKFQPNLENFNSGKLPSVATLCSKRLDAVPSILENISWIALASRLYGCIGVNFEEGETCWTPENDAILVQCLVHLVQIGYCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSSRTPHSKRLSLGNMTEPTRRDEMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFPPEWKYDYCMEVLGRAPTQPKQP

Homology

[Close]

BLAST of Spg030176.1 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 154.1 bits (388), Expect = 2.3e-33
Identity = 92/267 (34.46%), Postives = 131/267 (49.06%), Query Frame = 0


Query: 110 WTPENDAILVQCLVHLVQ------------IGY--------------CSGFGWNEERKCI 169
           WT   D +LV+CL+ LV+            +GY              CSGFGWNE +KCI
Sbjct: 150 WTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPACSGFGWNEGQKCI 209

Query: 170 EAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIAD 229
           E EK +FD WV+GHP A+GL N+PFP+F DL +VFG+D A GGR  TP+E++   +   D
Sbjct: 210 EVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMS--SQTARD 269

Query: 230 LEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGAR 289
            EED                      ++ ED  + +P  ++P  GE+           A 
Sbjct: 270 TEED-------------------DMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAG 329

Query: 290 SSRTPHSKRLSLGNMTEPTR-------------------RDEMERNRRKELYAELQSIPG 332
           SSR    +R   G++ +  R                   + E+E +  K LYAELQ+IPG
Sbjct: 330 SSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPG 389

[Close]

BLAST of Spg030176.1 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 4.2e-27
Identity = 80/221 (36.20%), Postives = 115/221 (52.04%), Query Frame = 0


Query: 131 CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHT 190
           CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  T
Sbjct: 5   CSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKT 64

Query: 191 PIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEE 250
           PIE+         +  D   DD +               ++ ED  + +P  ++P  GE+
Sbjct: 65  PIEMG------LQIARDTEEDDMD---------------INLEDFDIPNPHGLEPPSGED 124

Query: 251 FCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERN 310
                   A    SS+ P  KR S           +M E ++           + E+E +
Sbjct: 125 MSSTPTSMAHDVGSSK-PSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESS 184

Query: 311 RRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP 332
             K LYAELQ+IPG+ + D L+V  +LL    M+  F+D+P
Sbjct: 185 IHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLDYP 203

[Close]

BLAST of Spg030176.1 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 4.2e-27
Identity = 80/221 (36.20%), Postives = 115/221 (52.04%), Query Frame = 0


Query: 131 CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHT 190
           CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  T
Sbjct: 6   CSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKT 65

Query: 191 PIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEE 250
           PIE+         +  D   DD +               ++ ED  + +P  ++P  GE+
Sbjct: 66  PIEMG------LQIARDTEEDDMD---------------INLEDFDIPNPHGLEPPSGED 125

Query: 251 FCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERN 310
                   A    SS+ P  KR S           +M E ++           + E+E +
Sbjct: 126 MSSTPTSMAHDVGSSK-PSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESS 185

Query: 311 RRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP 332
             K LYAELQ+IPG+ + D L+V  +LL    M+  F+D+P
Sbjct: 186 IHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLDYP 204

[Close]

BLAST of Spg030176.1 vs. NCBI nr
Match: TYK10886.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 7.2e-27
Identity = 79/221 (35.75%), Postives = 115/221 (52.04%), Query Frame = 0


Query: 131 CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHT 190
           CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  T
Sbjct: 6   CSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKT 65

Query: 191 PIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEE 250
           P+E+         +  D   DD +               ++ ED  + +P  ++P  GE+
Sbjct: 66  PVEMG------LQIARDTEEDDMD---------------INLEDFDIPNPHGLEPPSGED 125

Query: 251 FCGASIGRACGARSSRTPHSKRLS---------LGNMTEPTR-----------RDEMERN 310
                   A    SSR P  KR S           +M E ++           + E+E +
Sbjct: 126 MSSTPTSMAYDVGSSR-PSKKRRSYSEDLMDTFCASMRETSKEIRKITAWQREKMEIESS 185

Query: 311 RRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP 332
             K LYAELQ+IPG+ + D L+V  +LL    M+  F+++P
Sbjct: 186 IHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLNYP 204

[Close]

BLAST of Spg030176.1 vs. NCBI nr
Match: KAA0063789.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 6.1e-26
Identity = 82/262 (31.30%), Postives = 113/262 (43.13%), Query Frame = 0


Query: 110 WTPENDAILVQCLVHLVQIG------------------------YCSGFGWNEERKCIEA 169
           WT   D  LV+CL+ LV+ G                          S FGWNEERKCIEA
Sbjct: 64  WTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMRPAYSRFGWNEERKCIEA 123

Query: 170 EKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLE 229
           EK +FD WV+GH  A+GL N+ FP+F DL +VFG+D A  GR  TP+++       + + 
Sbjct: 124 EKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQMG------SQIA 183

Query: 230 EDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSS 289
           +D   DD +               ++ ED  + +P  + P  GE+        A  A SS
Sbjct: 184 KDTEEDDMD---------------INLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSS 243

Query: 290 RTPHSKRLSLGNMTEPTRRDEMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMT 348
           R    +R   G++       E                             +LL    M+ 
Sbjct: 244 RPSKKRRSYSGDLVNTFHAIE-----------------------------SLLPDPTMLH 275

[Close]

BLAST of Spg030176.1 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-33
Identity = 92/267 (34.46%), Postives = 131/267 (49.06%), Query Frame = 0


Query: 110 WTPENDAILVQCLVHLVQ------------IGY--------------CSGFGWNEERKCI 169
           WT   D +LV+CL+ LV+            +GY              CSGFGWNE +KCI
Sbjct: 150 WTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPACSGFGWNEGQKCI 209

Query: 170 EAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIAD 229
           E EK +FD WV+GHP A+GL N+PFP+F DL +VFG+D A GGR  TP+E++   +   D
Sbjct: 210 EVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRCKTPVEMS--SQTARD 269

Query: 230 LEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGAR 289
            EED                      ++ ED  + +P  ++P  GE+           A 
Sbjct: 270 TEED-------------------DMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAG 329

Query: 290 SSRTPHSKRLSLGNMTEPTR-------------------RDEMERNRRKELYAELQSIPG 332
           SSR    +R   G++ +  R                   + E+E +  K LYAELQ+IPG
Sbjct: 330 SSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPG 389

[Close]

BLAST of Spg030176.1 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-27
Identity = 80/221 (36.20%), Postives = 115/221 (52.04%), Query Frame = 0


Query: 131 CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHT 190
           CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  T
Sbjct: 6   CSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKT 65

Query: 191 PIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEE 250
           PIE+         +  D   DD +               ++ ED  + +P  ++P  GE+
Sbjct: 66  PIEMG------LQIARDTEEDDMD---------------INLEDFDIPNPHGLEPPSGED 125

Query: 251 FCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERN 310
                   A    SS+ P  KR S           +M E ++           + E+E +
Sbjct: 126 MSSTPTSMAHDVGSSK-PSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESS 185

Query: 311 RRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP 332
             K LYAELQ+IPG+ + D L+V  +LL    M+  F+D+P
Sbjct: 186 IHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLDYP 204

[Close]

BLAST of Spg030176.1 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.0e-27
Identity = 80/221 (36.20%), Postives = 115/221 (52.04%), Query Frame = 0


Query: 131 CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHT 190
           CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  T
Sbjct: 5   CSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKT 64

Query: 191 PIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEE 250
           PIE+         +  D   DD +               ++ ED  + +P  ++P  GE+
Sbjct: 65  PIEMG------LQIARDTEEDDMD---------------INLEDFDIPNPHGLEPPSGED 124

Query: 251 FCGASIGRACGARSSRTPHSKRLSL---------GNMTEPTR-----------RDEMERN 310
                   A    SS+ P  KR S           +M E ++           + E+E +
Sbjct: 125 MSSTPTSMAHDVGSSK-PSKKRRSYSEDLMDTFRASMRETSKEIRKIAAWQREKMEIESS 184

Query: 311 RRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP 332
             K LYAELQ+IPG+ + D L+V  +LL    M+  F+D+P
Sbjct: 185 IHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLDYP 203

[Close]

BLAST of Spg030176.1 vs. ExPASy TrEMBL
Match: A0A5D3CKC1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00580 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-27
Identity = 79/221 (35.75%), Postives = 115/221 (52.04%), Query Frame = 0


Query: 131 CSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHT 190
           CS FGWNEE+KCIEA+K +FD WV+GHP A+GL N+ FP+F DL ++FG+D A GGR  T
Sbjct: 6   CSRFGWNEEQKCIEAQKSVFDDWVKGHPNARGLLNKSFPYFYDLKIMFGRDRATGGRCKT 65

Query: 191 PIEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEE 250
           P+E+         +  D   DD +               ++ ED  + +P  ++P  GE+
Sbjct: 66  PVEMG------LQIARDTEEDDMD---------------INLEDFDIPNPHGLEPPSGED 125

Query: 251 FCGASIGRACGARSSRTPHSKRLS---------LGNMTEPTR-----------RDEMERN 310
                   A    SSR P  KR S           +M E ++           + E+E +
Sbjct: 126 MSSTPTSMAYDVGSSR-PSKKRRSYSEDLMDTFCASMRETSKEIRKITAWQREKMEIESS 185

Query: 311 RRKELYAELQSIPGVSMGDDLVVAWALLSYENMMTHFMDFP 332
             K LYAELQ+IPG+ + D L+V  +LL    M+  F+++P
Sbjct: 186 IHKRLYAELQTIPGMDVDDCLIVVESLLPDPIMLHTFLNYP 204

[Close]

BLAST of Spg030176.1 vs. ExPASy TrEMBL
Match: A0A5A7VE44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00500 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.9e-26
Identity = 82/262 (31.30%), Postives = 113/262 (43.13%), Query Frame = 0


Query: 110 WTPENDAILVQCLVHLVQIG------------------------YCSGFGWNEERKCIEA 169
           WT   D  LV+CL+ LV+ G                          S FGWNEERKCIEA
Sbjct: 64  WTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMRPAYSRFGWNEERKCIEA 123

Query: 170 EKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTPIEITPKPEPIADLE 229
           EK +FD WV+GH  A+GL N+ FP+F DL +VFG+D A  GR  TP+++       + + 
Sbjct: 124 EKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQMG------SQIA 183

Query: 230 EDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEFCGASIGRACGARSS 289
           +D   DD +               ++ ED  + +P  + P  GE+        A  A SS
Sbjct: 184 KDTEEDDMD---------------INLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSS 243

Query: 290 RTPHSKRLSLGNMTEPTRRDEMERNRRKELYAELQSIPGVSMGDDLVVAWALLSYENMMT 348
           R    +R   G++       E                             +LL    M+ 
Sbjct: 244 RPSKKRRSYSGDLVNTFHAIE-----------------------------SLLPDPTMLH 275

[Close]

BLAST of Spg030176.1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 2.2e-10
Identity = 30/121 (24.79%), Postives = 57/121 (47.11%), Query Frame = 0


Query: 132 SGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAHTP 191
           +GF W+  R  + A+ DI++ +++ HP A+  R +  P + +L  +FGK+++ G      
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYTRLA 458

Query: 192 IEITPKPEPIADLEEDMNVDDSEHSKLFFLSILEKSTSVDYEDCYVLSPPVIDPTLGEEF 251
               P P     + E  + D  + ++ F   +   +   DY  C  + PP I+ T   + 
Sbjct: 459 QAFDPSPAETVRMNESGSTDGFKDTRSFQKVVYTSNEKNDY-PCSNIGPPCIEWTRVMDH 518

Query: 252 C 253
           C
Sbjct: 519 C 518

[Close]

BLAST of Spg030176.1 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 4.4e-06
Identity = 26/96 (27.08%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 130 YCSGFGWNEERKCIEAEKDIFDAWVEGHPRAKGLRNRPFPWFNDLALVFGKDSARGGRAH 189
           + SGFGW+   K   A  +++  +++ HP  K LR   F +F++L ++FG+  A G  A 
Sbjct: 90  FSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAI 149

Query: 190 TPIEIT----------PKPEPIADLEEDMNVDDSEH 216
              + T          P+ E + D +     D + H
Sbjct: 150 GLCDSTDGLTYRAGENPRKEYVDDFDNVYEYDTTTH 185

The following BLAST results are available for this feature:

BLAST of Spg030176.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07921.1	2.3e-33	34.46	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
XP_008460440.1	4.2e-27	36.20	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]
KAA0067273.1	4.2e-27	36.20	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10886.1	7.2e-27	35.75	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063789.1	6.1e-26	31.30	retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon p...	[more]

BLAST of Spg030176.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg030176.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7T4	1.1e-33	34.46	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGQ0	2.0e-27	36.20	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CC17	2.0e-27	36.20	uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=...	[more]
A0A5D3CKC1	3.5e-27	35.75	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VE44	2.9e-26	31.30	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg030176.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	2.2e-10	24.79	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G27260.1	4.4e-06	27.08	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..289
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 132..344

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg030176	Spg030176	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg030176.1-cds	Spg030176.1-cds-scaffold6:14592228..14592449	CDS
Spg030176.1-cds	Spg030176.1-cds-scaffold6:14592507..14592674	CDS
Spg030176.1-cds	Spg030176.1-cds-scaffold6:14593870..14594076	CDS
Spg030176.1-cds	Spg030176.1-cds-scaffold6:14594159..14594235	CDS
Spg030176.1-cds	Spg030176.1-cds-scaffold6:14594405..14594506	CDS
Spg030176.1-cds	Spg030176.1-cds-scaffold6:14594954..14595239	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg030176.1	Spg030176.1-protein	polypeptide