Spg029334.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg029334.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationscaffold12: 36294227 .. 36299003 (+)
Sequence length1113
RNA-Seq ExpressionSpg029334.1
SyntenySpg029334.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGAAGATGTTGACGTTTCAGTATCCAATAGAAAGGAGATTGATTTTGAACATTCAGTATTAATTAAGGCGTCTGATCTTCCAAATTTATCTCAAGCATTGAAAGCAATTAATCATGATAATCCTCTTTATCAAGAATCTTCTGTTGTTTCCAAAAAGCCCATTGGTGAATCCTCTTTATTTTCAGATTTGTCAAGCCCCCAAAGTATCCAGGAAATGAAAAATCGTTTTAATAAAGCTTACCCTCTATTATATTATATACTTGGAAAAAAGGTGTCGTCTCTTTGTGTCCTACCATCCACGAGTCAGATACATGCAATGAAGATGCGATTGAAGAGTCTTGTTCTTCTCTTTTGATTCCCAAAGTCAAGCAAACGATCAATCATGATCAGATATTAAAAGAGAATTCCCATCAATTAATTCTCAATTAAAGCAGCTTTATTTATAGTTCTTCTAACTATTCGAATGTTCATTTGATCAAAGGAGTTATTCAACCTGTCAAAGCCTTTAAAGTTACTCAATCTTCCCCTCCCTTGCGAGAGGTTGAGTCTGATGGTGAATCTGAAGTAAGTTTGAGTAGCATTGAAGCAAATTTACAACCTATGAATAATGATTCAGATGATTTCCCTGAAGAGACTTGTGTTGATGGTTTGGGTTTGCTTTTCCAGGATTATGGAAAAGTGGTATGTTCTCCTCCAAGATTAGATATTATCAATTCTAAGTCAGAAGTTTTGTCTTTTGCTTCTAATTCTGTACCAAACAAGTTCTCATCTCTTTTTGAAGCTTATGGCCTTCAAGTTTGAGAAATTTCTCCTCTAAATTCAATTGAATTTTAAGCCGTTCTTATTATTTCATTTTTCTATACAATGGAGATGAAGATTATTTCCTGGATTACTAGAGGCCTTGGTGATCGTTCTAAAAGTATAGATTTGAAGAAATTTATTCAACACTATAGGCCAGATTTGGTGTTAATTCAGGAGATGAAGATGGTGTCTTTTGATAATCGGATAATCAAGTCACTGTGGAGTTCTAGAGACATTAGTTGGGTCAGTGTTGATTCCATTGGAAGATTTGGAGACATGCTAATTATGTGGGTTGATAGTAAATTTAGATCATATGGTTGGACTGGTTATGTGATTGCTTTGAAGCTTAGAAATCTGAAAGTTGTAAAACTCTGGTTTGTTGATTTTGAAACAAAAACAAAGAGTCAGGATAAGAGGTTTCTAGCGGAAATTGCTAGGTGATGTTAAAGTAGATGTATTTCTTTTATTCCCTAAGGATCTTGGTATTCGATATTCAGTCAAAAGTGAATTATTTGAGTTTCAGTTGGCAGAAGAAAGAAATTTGATCTAGAAAGGTAAATTACAATGGCTTATAGCAGGAGATGAAAACATCAACATTTTTCTCATCGGTTCTTGGCTGCAAAAAAGAGGGAACTTCTGATTTCTGAACTAAGTAATGCAGATGGGATTTCTCTTCTTTTCCTTGGGGAGGTTGAAGCTGAAGTTCTAAGGTTTTTTGCTTCCTTTTACATGAAACTTCCAGGCTAGAGGTTTATTCCTTTCAACCTTAACTGGGCCAAGGTTTCAAACGTTCAGAGTGTTGGATCAAATTGGGCCACTTTCATCCTCAATTGTCCTTTTTGCTAGACAAATGGTGAAAGTCTTAATCATATCTTCTTCGATTGTTTATATTCTTGAGCTTGTTGGATCAAAAATTTTTCCCTATTTCACTTTTGGTGGGTTTTTCTCCAATATCTTTAAGGAGAATGTTCTTCATTTACTTATTGGCCCCTGTTTGGTTCCAAGGGCGAAATTATTATCGGTTGACGCAGTTTAATCTGCTTTGTTAGATTTGTGGTTCGAGTGAAATCAAAGATTTTTCCAAGACAAGTACCTCTCCTAGTTCGATCGTTTTGAATCTCGCTTAAAAGCTTCTTCATGGTGTTCTCTTACGAATCTTTTTGTTGGGTTTTCTCTGTTGGACATTTACTTTAATTGGAATGCTTTTATTTTCCTTTTGTAGTTTTTCTTTATTTGTTTTTGTTTCACTTCCTTGTGTAGTTTGTATCTTTTGAGCATTAGTTTCTTTTTATTTCTTCAATGAAAAATTTCGTTTCTTGTTTAAGAAAAAAGATTCTCTTAAAAAATGTCATAGTTAAAGAAGTTTGGAATCAGAGGTGCACTTTTTGGTACCTACAACTTGGTAGACATTTTAAGGATGACGAAGCGTTCGAGTGGACTGAGATGAATTGTATCCTTGAACCCATTGTCCTCTCTCAATTTGAAGACTTGTGGAAATGGCTTCCTAGCTCCAATGACCTCTCTCCACTAAATCTTTGATGGCCGATATGGGGAACTCAACCATCTTCTTGGAGTCTCCTCTAGTTCGGGCTATTTGGAGAGACAAATATCCAAAGAAGATCAAATTCTTTCTTTGGGAAATGACATATAGAGCTATTAGTACCAAAGATAATTTACAGAGGCGCATGCCTACTTTGGCCCTATCCCCAAGTTGGTGTTCATTTGTGCAAGCAAAACAATGAAACTCTAGACCACCTATTTATCCATTGTCCCTATGCATGGAGGTTCGGGACCAAAATCGTTTCTGCCTTTGGATGGAATATGGCCATTCCATGGGATATGAAGGGCACTCTCAACTCCATCTTGTTGGGCCATCCTTTTAAAGATGTCAAAGCTATTTTGTGGATGCATATCATTTTTTTTTTATAAGAAACGACAAAAGGATATCATCATTTTTTTTTATTTTTTTTTTTGTGGATGCACATCATTAGGGCTGTTGGGAATTGGGGAGTGCGACCAAAGTCCCACATTGGCTAGATAAGGGGATGATCATGAGTTTATAGGAGAGGACAAGTATCTCCATTGGTATGAGGCCTTTTGGGTGGAACCGTTTATAGGAGAGGACAAGTATCTCCATTGGTATGAGGCCTTTTGGGTGGAACCAAAAGCAAAGCCATGAGGGCTTATGCCCAAAGTGGACAATATCATACCATTGTAGAGATCTGTGTCGTGTCCTTGGCCCTTAACAAGTGGTATCAAAGCTATACCCCCTGACTTAGCCATGTCGGTAGAATCCCCAAGTGTCAAACAAAAAATATGTGAGCCTTAAAGAAATAGTCATGGGGAGATCCGTAATATGGGTGGATAGAATTTGCAATCTGGCTCTAAGAGCAAACTCCTCCCTAAGAAAGGAGATATGGACGGATATAATCCATAATTTAGCTCTAAGGGCAAACTCGTCCCTAAGAAAGGAGATATGGACGGATAGATGACTATTTGAGGGGAGGCTCGTCTGTGGTACTTTGTTCGAGGGGAGGATTGTTGGGAATTGGGGAGTGCGACCAAAGTCCCACATTGGCTAGATAAGAGGATGATCATGGGTTTATAGGGGAGGACAAGTATCACTATTGGTATGAGGCCTTTTGGGTGGAACCAAAAGCAAAGCCATGAGGGCTTATATCCAAAGTGGACAATAATATACCATTGTGGAGATCTGTGTCGTTTCTGCATCCTTAACAAGGGCTTTTTTCTAGGTATTGTGGATGGAAAGAAATCACAGGGTTTTTATGGATAAAGAGCTTCCCATTTATGAGCTCTTTGATATTGTCATTTATCATGCTATTTCTTGGTGGAAATCCTCTAGTATCTTTGCATTGAATTCATATACTCCCCTTTTAACCAATTGGGAAAGCCTTTTGTAATCATCTTGTTTTTTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAGAAGAAAAGAAAAGAAAAAAGATTTTCTCTTATTCTTTAACCCTGTGGTCTCTTTGTTCTGATGTCACTTAACGTGTTTGGTTATATAAGTTTCATGTTAAATCTTTAATTTCCTGCCGTGCAAGGTTACTACTGTTATTACTTTTATATCTTTAATTATGTAATTTTCTTTGTCTAAACGTTATTTGTAATTATTACTTCATACTAGTGTGAACGAAATTGGCTTCTTCTTCTTTTTTTTTTTTTTTAAACTACTTTTTATGTATGTGCTTTAGCTTCTGCTCTTAATTGTCATCTTTCTTGACTTTATTTGATTAACGTTGATAATACAGATGTATTGACTTTGCAATTGCAAACAACAGTGTTCCAACTAAAGCTCAGGGTTTACCCAGTCTCTTGAAACAGGTAATGTCTTTTATTCTAGATTTACAGGAATTTCTGGTGTTTTAAATCTGTTTGTTCCCCAAGACAATCGTTTTCAAAGCCAAGTACTTCATTTCCCATTTTTTTATAATAAATTATTAGTCTATTTGAGCAGCACTTTTTGGGTATGCTTTACATAATTTGTGTAATTTCTTGTCCCTAGAATGTCCAATTTCTGTCAAGTTACCTGTTACTTTCATTCCTTGTTATTATACAATCACTACAAAATATTACACCTTCCTAAATGGTTGACTGTGGTCATCTTCAAATTATTTGGCATTCTTATTTTGGTTCTAAGCTATGCCTTATAGATCCTGGCAGGACATCAATGGGTTGGGATTGCACTACCCCCTTCTTTTTTTTTTTTTTTTTAAGAAAGAATGAAAGAATGCAAAAGCATCTAAAAAAAAAAGTCCACAAAAGGGAGTCCCGCTAAAGAAAGGGGCTCCAGTCAATAATAATAAGACCTAACCTTTTGATTAGCTGAAACTTTTAGCGTATGTGGGGCAAAGATCTTGGGCAAAAGGTTGCATTTGGATTTGGAAGATGGGTTGTCATCCTCTCTCTGTAA

mRNA sequence

ATGAAGGAAGATGTTGACGTTTCAGTATCCAATAGAAAGGAGATTGATTTTGAACATTCAGTATTAATTAAGGCGTCTGATCTTCCAAATTTATCTCAAGCATTGAAAGCAATTAATCATGATAATCCTCTTTATCAAGAATCTTCTGTTGTTTCCAAAAAGCCCATTGGTGAATCCTCTTTATTTTCAGATTTGTCAAGCCCCCAAAGAGTTATTCAACCTGTCAAAGCCTTTAAAGTTACTCAATCTTCCCCTCCCTTGCGAGAGGTTGAGTCTGATGGTGAATCTGAAGTAAGTTTGAGTAGCATTGAAGCAAATTTACAACCTATGAATAATGATTCAGATGATTTCCCTGAAGAGACTTGTGTTGATGGTTTGGGTTTGCTTTTCCAGGATTATGGAAAAGTGGTATGTTCTCCTCCAAGATTAGATATTATCAATTCTAAGTCAGAAGTTTTGTCTTTTGCTTCTAATTCTGTACCAAACAAGTTCTCATCTCTTTTTGAAGCTTATGGCCTTCAAATTATTTCCTGGATTACTAGAGGCCTTGGTGATCGTTCTAAAAGTATAGATTTGAAGAAATTTATTCAACACTATAGGCCAGATTTGGTGTTAATTCAGGAGATGAAGATGGTGTCTTTTGATAATCGGATAATCAAGTCACTGTGGAGTTCTAGAGACATTAGTTGGGTCAGTGTTGATTCCATTGGAAGATTTGGAGACATGCTAATTATGTGGGTTGATAGTAAATTTAGATCATATGGTTGGACTGGTTATGTGATTGCTTTGAAGCTTAGAAATCTGAAAGTTGTAAAACTCTGGTTTGTTGATTTTGAAACAAAAACAAAGAGTCAGGATAAGAGGTTTCTAGCGGAAATTGCTAGGGAACTTCTGATTTCTGAACTAAGTAATGCAGATGGGATTTCTCTTCTTTTCCTTGGGGAGGTTGAAGCTGAAGTTCTAAGATGTATTGACTTTGCAATTGCAAACAACAGTGTTCCAACTAAAGCTCAGGGTTTACCCAGTCTCTTGAAACAGCGTATGTGGGGCAAAGATCTTGGGCAAAAGGTTGCATTTGGATTTGGAAGATGGGTTGTCATCCTCTCTCTGTAA

Coding sequence (CDS)

ATGAAGGAAGATGTTGACGTTTCAGTATCCAATAGAAAGGAGATTGATTTTGAACATTCAGTATTAATTAAGGCGTCTGATCTTCCAAATTTATCTCAAGCATTGAAAGCAATTAATCATGATAATCCTCTTTATCAAGAATCTTCTGTTGTTTCCAAAAAGCCCATTGGTGAATCCTCTTTATTTTCAGATTTGTCAAGCCCCCAAAGAGTTATTCAACCTGTCAAAGCCTTTAAAGTTACTCAATCTTCCCCTCCCTTGCGAGAGGTTGAGTCTGATGGTGAATCTGAAGTAAGTTTGAGTAGCATTGAAGCAAATTTACAACCTATGAATAATGATTCAGATGATTTCCCTGAAGAGACTTGTGTTGATGGTTTGGGTTTGCTTTTCCAGGATTATGGAAAAGTGGTATGTTCTCCTCCAAGATTAGATATTATCAATTCTAAGTCAGAAGTTTTGTCTTTTGCTTCTAATTCTGTACCAAACAAGTTCTCATCTCTTTTTGAAGCTTATGGCCTTCAAATTATTTCCTGGATTACTAGAGGCCTTGGTGATCGTTCTAAAAGTATAGATTTGAAGAAATTTATTCAACACTATAGGCCAGATTTGGTGTTAATTCAGGAGATGAAGATGGTGTCTTTTGATAATCGGATAATCAAGTCACTGTGGAGTTCTAGAGACATTAGTTGGGTCAGTGTTGATTCCATTGGAAGATTTGGAGACATGCTAATTATGTGGGTTGATAGTAAATTTAGATCATATGGTTGGACTGGTTATGTGATTGCTTTGAAGCTTAGAAATCTGAAAGTTGTAAAACTCTGGTTTGTTGATTTTGAAACAAAAACAAAGAGTCAGGATAAGAGGTTTCTAGCGGAAATTGCTAGGGAACTTCTGATTTCTGAACTAAGTAATGCAGATGGGATTTCTCTTCTTTTCCTTGGGGAGGTTGAAGCTGAAGTTCTAAGATGTATTGACTTTGCAATTGCAAACAACAGTGTTCCAACTAAAGCTCAGGGTTTACCCAGTCTCTTGAAACAGCGTATGTGGGGCAAAGATCTTGGGCAAAAGGTTGCATTTGGATTTGGAAGATGGGTTGTCATCCTCTCTCTGTAA

Protein sequence

MKEDVDVSVSNRKEIDFEHSVLIKASDLPNLSQALKAINHDNPLYQESSVVSKKPIGESSLFSDLSSPQRVIQPVKAFKVTQSSPPLREVESDGESEVSLSSIEANLQPMNNDSDDFPEETCVDGLGLLFQDYGKVVCSPPRLDIINSKSEVLSFASNSVPNKFSSLFEAYGLQIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEMKMVSFDNRIIKSLWSSRDISWVSVDSIGRFGDMLIMWVDSKFRSYGWTGYVIALKLRNLKVVKLWFVDFETKTKSQDKRFLAEIARELLISELSNADGISLLFLGEVEAEVLRCIDFAIANNSVPTKAQGLPSLLKQRMWGKDLGQKVAFGFGRWVVILSL
Homology
[Close]
BLAST of Spg029334.1 vs. NCBI nr
Match: XP_038876676.1 (uncharacterized protein LOC120069076 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.2e-11
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = 0 

Query: 173 LQIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEMKMVSFDNRIIKSLWSSRDISWVS 232
           ++I++W TRGLGD SK + LK+F++   PD+VLIQE K    +   IKSLWSS+++    
Sbjct: 1   MKIVTWDTRGLGDSSKRLLLKRFLKKVNPDIVLIQETKKDRIEGSFIKSLWSSKEVGCAF 60

Query: 233 VDSIGRFGDMLIMWVDSKF--RSYGWTGYVIALKLRNLKVVKLWFVDFETKTKSQDKRFL 291
           V++ G+ G +L +W DSK    S     + +++K + +     W  +       Q++R L
Sbjct: 61  VEAKGKSGGLLTVWDDSKILVSSISKDEFSLSIKCQTINKKICWITNVYGPCDYQERRRL 120

[Close]
BLAST of Spg029334.1 vs. NCBI nr
Match: RVW77727.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-11
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 0 

Query: 174 QIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEMKMVSFDNRIIKSLWSSRDISWVSV 233
           +I+SW TRGLG R K   +++F+    PD+V++QE K V +D R + S+W  R + W ++
Sbjct: 603 KILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKRVIWDRRFVSSVWKGRSLEWAAL 662

Query: 234 DSIGRFGDMLIMWVDSKFRSYG 256
            + G  G ++I+W   KF+ YG
Sbjct: 663 PACGASGGIVILWDSIKFKLYG 684

[Close]
BLAST of Spg029334.1 vs. NCBI nr
Match: RVW67200.1 (hypothetical protein CK203_065147 [Vitis vinifera])

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-11
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 0 

Query: 173 LQIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEMKMVSFDNRIIKSLWSSRDISWVS 232
           ++I+SW TRGLG R K   +++F+    PD+VL+QE K   +D R + S+W  + + WV+
Sbjct: 23  MKILSWNTRGLGSRKKRRIVRRFLSTQNPDVVLLQETKREIWDRRFVSSVWKGKCLDWVA 82

Query: 233 VDSIGRFGDMLIMWVDSKFRSYG 256
           + + G FG ++I+W   KF  YG
Sbjct: 83  LPACGAFGGIVILWDSVKFNLYG 105

[Close]
BLAST of Spg029334.1 vs. NCBI nr
Match: RVW25035.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 5.8e-11
Identity = 60/222 (27.03%), Postives = 107/222 (48.20%), Query Frame = 0 

Query: 56   IGESSLFSDLSSPQRVIQPV--KAFKVTQSS--PPLREVESDGESEVSLS-SIEANLQPM 115
            + ESS+ S + S      P+  ++  V+Q S  P +  VE      VS S  +E  L+  
Sbjct: 1513 LSESSVSSVIPSRCLAFSPIPLESSLVSQRSPFPKIAVVEPSRLVGVSRSEGVEFPLETS 1572

Query: 116  NNDSDDF---------PEETCVDGLG---------LLFQDYGKVVCSPPRLDIINSKSEV 175
            N +S+D+         PE+ CV G              +D+     +P ++  + S  E 
Sbjct: 1573 NRNSEDWPLFKDSLSSPEKLCVSGKAPSPNPEPPIFPLEDFQVEGLTPGKMVKVQSVLES 1632

Query: 176  LSF---ASNSVPNKFSSLFEAYGLQIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEM 235
            L       N    +  +   ++  +I+SW TRGLG + K   +++F+    PD+V++QE 
Sbjct: 1633 LRIRIVRENGKGAEEENQSNSFADKILSWNTRGLGSKKKRRIVRRFLSTQNPDIVMLQET 1692

Query: 236  KMVSFDNRIIKSLWSSRDISWVSVDSIGRFGDMLIMWVDSKF 252
            K  ++D R + S+W+ + + WV++ + G  G ++I+W  SKF
Sbjct: 1693 KRETWDRRFVSSVWTGKRVEWVALPACGASGGIVILWDSSKF 1734

[Close]
BLAST of Spg029334.1 vs. NCBI nr
Match: RVW96808.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 79.7 bits (195), Expect = 5.8e-11
Identity = 44/155 (28.39%), Postives = 79/155 (50.97%), Query Frame = 0 

Query: 109 PMNNDSDDFPEETCVDGLG---------LLFQDYGKVVCSPPRLDIINSKSEVLSF---A 168
           P+  DS   PE+ CV G           L  +D+     +P ++  + S  E L      
Sbjct: 536 PLFKDSLSSPEKLCVSGKDPSPNPEPPILPLEDFQVEGLTPGKMVKVQSVLESLRIRIVR 595

Query: 169 SNSVPNKFSSLFEAYGLQIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEMKMVSFDN 228
            N    +  +   ++  +I+SW TRGLG + K   +++F+    P++V++QE K  ++D 
Sbjct: 596 ENGKGAEEENQSNSFADKILSWNTRGLGSKKKRRIVRRFLSTQNPNIVMLQETKRETWDR 655

Query: 229 RIIKSLWSSRDISWVSVDSIGRFGDMLIMWVDSKF 252
           R + S+W+ R + WV++ + G  G ++I+W  SKF
Sbjct: 656 RFVSSVWTGRRVEWVALPACGASGGIVILWDSSKF 690

[Close]
BLAST of Spg029334.1 vs. ExPASy TrEMBL
Match: A0A438G4S3 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_065147 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 0 

Query: 173 LQIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEMKMVSFDNRIIKSLWSSRDISWVS 232
           ++I+SW TRGLG R K   +++F+    PD+VL+QE K   +D R + S+W  + + WV+
Sbjct: 23  MKILSWNTRGLGSRKKRRIVRRFLSTQNPDVVLLQETKREIWDRRFVSSVWKGKCLDWVA 82

Query: 233 VDSIGRFGDMLIMWVDSKFRSYG 256
           + + G FG ++I+W   KF  YG
Sbjct: 83  LPACGAFGGIVILWDSVKFNLYG 105

[Close]
BLAST of Spg029334.1 vs. ExPASy TrEMBL
Match: A0A438H059 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_484 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 32/82 (39.02%), Postives = 52/82 (63.41%), Query Frame = 0 

Query: 174 QIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEMKMVSFDNRIIKSLWSSRDISWVSV 233
           +I+SW TRGLG R K   +++F+    PD+V++QE K V +D R + S+W  R + W ++
Sbjct: 603 KILSWNTRGLGSRKKRRTVRRFLSTQNPDVVMLQETKRVIWDRRFVSSVWKGRSLEWAAL 662

Query: 234 DSIGRFGDMLIMWVDSKFRSYG 256
            + G  G ++I+W   KF+ YG
Sbjct: 663 PACGASGGIVILWDSIKFKLYG 684

[Close]
BLAST of Spg029334.1 vs. ExPASy TrEMBL
Match: A0A438CP96 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_30 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-11
Identity = 60/222 (27.03%), Postives = 107/222 (48.20%), Query Frame = 0 

Query: 56   IGESSLFSDLSSPQRVIQPV--KAFKVTQSS--PPLREVESDGESEVSLS-SIEANLQPM 115
            + ESS+ S + S      P+  ++  V+Q S  P +  VE      VS S  +E  L+  
Sbjct: 1513 LSESSVSSVIPSRCLAFSPIPLESSLVSQRSPFPKIAVVEPSRLVGVSRSEGVEFPLETS 1572

Query: 116  NNDSDDF---------PEETCVDGLG---------LLFQDYGKVVCSPPRLDIINSKSEV 175
            N +S+D+         PE+ CV G              +D+     +P ++  + S  E 
Sbjct: 1573 NRNSEDWPLFKDSLSSPEKLCVSGKAPSPNPEPPIFPLEDFQVEGLTPGKMVKVQSVLES 1632

Query: 176  LSF---ASNSVPNKFSSLFEAYGLQIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEM 235
            L       N    +  +   ++  +I+SW TRGLG + K   +++F+    PD+V++QE 
Sbjct: 1633 LRIRIVRENGKGAEEENQSNSFADKILSWNTRGLGSKKKRRIVRRFLSTQNPDIVMLQET 1692

Query: 236  KMVSFDNRIIKSLWSSRDISWVSVDSIGRFGDMLIMWVDSKF 252
            K  ++D R + S+W+ + + WV++ + G  G ++I+W  SKF
Sbjct: 1693 KRETWDRRFVSSVWTGKRVEWVALPACGASGGIVILWDSSKF 1734

[Close]
BLAST of Spg029334.1 vs. ExPASy TrEMBL
Match: A0A438FW30 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_762 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-11
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = 0 

Query: 141 PRLDIINSKSEVLS--FASNSVPNKFSSLFEA----YGLQIISWITRGLGDRSKSIDLKK 200
           P+  I+ S  EVL         P K + + EA    + ++IISW  RGLG R+K   +K 
Sbjct: 292 PKDSIVRSHKEVLGDFLIDGLSPRKMAKVREARVFVFPMKIISWNVRGLGSRNKRRMIKD 351

Query: 201 FIQHYRPDLVLIQEMKMVSFDNRIIKSLWSSRDISWVSVDSIGRFGDMLIMWVDSKFRS 254
           F++   PD+V+IQE K  + D R + S+W+ R+  WV++ + G  G +LI+W DSK  S
Sbjct: 352 FLRSENPDVVMIQETKKENCDRRFVGSVWTVRNKDWVALPASGASGGILIIW-DSKILS 409

[Close]
BLAST of Spg029334.1 vs. ExPASy TrEMBL
Match: A0A6P5T1U8 (uncharacterized protein LOC110762145 OS=Prunus avium OX=42229 GN=LOC110762145 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-11
Identity = 43/130 (33.08%), Postives = 69/130 (53.08%), Query Frame = 0 

Query: 173 LQIISWITRGLGDRSKSIDLKKFIQHYRPDLVLIQEMKMVSFDNRIIKSLWSSRDISWVS 232
           ++IISW  RGLG + K + LK+ +   RPD+V++QE K    D R++ S+W SR   WV 
Sbjct: 1   MKIISWNIRGLGSKRKRLVLKEQLTRLRPDIVILQETKKQEIDRRLVASVWCSRFRDWVF 60

Query: 233 VDSIGRFGDMLIMW-------VDSKFRSYGWTGYVIALKLRNLKVVKLWFVDFETKTKSQ 292
           V S GR G ++I+W       +DS+   +      +++K+R       W        + +
Sbjct: 61  VPSTGRSGGIVIIWNTQFVSVIDSEIAEFS-----VSIKIRGTSGADWWLSGIYGPCRQR 120

Query: 293 DK-RFLAEIA 295
           D+ RF  E+A
Sbjct: 121 DRGRFWVELA 125

The following BLAST results are available for this feature:
BLAST of Spg029334.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876676.11.2e-1135.00uncharacterized protein LOC120069076 [Benincasa hispida][more]
RVW77727.13.4e-1139.02Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW67200.13.4e-1139.76hypothetical protein CK203_065147 [Vitis vinifera][more]
RVW25035.15.8e-1127.03LINE-1 retrotransposable element ORF2 protein [Vitis vinifera][more]
RVW96808.15.8e-1128.39Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
BLAST of Spg029334.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg029334.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438G4S31.6e-1139.76Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_065147 PE=4 SV=1[more]
A0A438H0591.6e-1139.02Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A438CP962.8e-1127.03LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF... [more]
A0A438FW304.8e-1137.82Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX... [more]
A0A6P5T1U84.8e-1133.08uncharacterized protein LOC110762145 OS=Prunus avium OX=42229 GN=LOC110762145 PE... [more]
BLAST of Spg029334.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 170..346
e-value: 5.5E-7
score: 31.6
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 173..281
NoneNo IPR availablePANTHERPTHR22748:SF11DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTICcoord: 167..298
IPR004808AP endonuclease 1PANTHERPTHR22748AP ENDONUCLEASEcoord: 167..298

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg029334Spg029334gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg029334.1-cdsSpg029334.1-cds-scaffold12:36294227..36294434CDS
Spg029334.1-cdsSpg029334.1-cds-scaffold12:36294713..36295026CDS
Spg029334.1-cdsSpg029334.1-cds-scaffold12:36295108..36295469CDS
Spg029334.1-cdsSpg029334.1-cds-scaffold12:36295662..36295742CDS
Spg029334.1-cdsSpg029334.1-cds-scaffold12:36298342..36298414CDS
Spg029334.1-cdsSpg029334.1-cds-scaffold12:36298929..36299003CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg029334.1Spg029334.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006281 DNA repair
molecular_function GO:0004518 nuclease activity