Spg029178.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg029178.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold12: 33457719 .. 33458335 (-)
Sequence length303
RNA-Seq ExpressionSpg029178.1
SyntenySpg029178.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCACCTACATGAATGCGTTGGATCATTGCGTTTGTATCAAATACAAAGTTGGTCATATCCATAGTATCACCAGGATAAGGTACCCTGCCTTATCCCTATACTACAGACTCTTTAGGCTATATCTTGAACATTGATCCCCATATGTCTCCACATACTGTTCAAGACTCATACAACAACCTAGGATGTTAGTTTATTGGATTAAGGTCATTTAGGCAAGACTAATACAAAATAACCAATAACACTTTATTGAAATAACATAAAAAAAAAACTCTCTATTAATGAACAGTCATATGTTACATTTACCATCTACGAGTTTTAGGGCATAAAACCCAACAATATAGATGTACTAGAATTTAGTATATGAACTAAAGATTTGCTACGTTTTCCATGCAGGGTCATCCACAAGCTAAGGGCCTCAGAAAGCAAGCCATTATCATGGTTTAATGAATTAGTTGTGGTATTCGAGAAAGATAGAGCAATGGGGGTAGGAGCTCGTACTCCAACTGACATGGCATCAGAACCTATAGCCGATCTAGACGACGACATGAACGTTGACTTTGAAGATTACTATGTCCCCTAG

mRNA sequence

ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCACCTACATGAATGCGTTGGATCATTGCGTTTGTATCAAATACAAAGTTGGTCATATCCATAGTATCACCAGGATAAGGGTCATCCACAAGCTAAGGGCCTCAGAAAGCAAGCCATTATCATGGTTTAATGAATTAGTTGTGGTATTCGAGAAAGATAGAGCAATGGGGGTAGGAGCTCGTACTCCAACTGACATGGCATCAGAACCTATAGCCGATCTAGACGACGACATGAACGTTGACTTTGAAGATTACTATGTCCCCTAG

Coding sequence (CDS)

ATGCAAACTCATTGCATAGGATACCCCCACTCGCATGTCACCTACATGAATGCGTTGGATCATTGCGTTTGTATCAAATACAAAGTTGGTCATATCCATAGTATCACCAGGATAAGGGTCATCCACAAGCTAAGGGCCTCAGAAAGCAAGCCATTATCATGGTTTAATGAATTAGTTGTGGTATTCGAGAAAGATAGAGCAATGGGGGTAGGAGCTCGTACTCCAACTGACATGGCATCAGAACCTATAGCCGATCTAGACGACGACATGAACGTTGACTTTGAAGATTACTATGTCCCCTAG

Protein sequence

MQTHCIGYPHSHVTYMNALDHCVCIKYKVGHIHSITRIRVIHKLRASESKPLSWFNELVVVFEKDRAMGVGARTPTDMASEPIADLDDDMNVDFEDYYVP
Homology
[Close]
BLAST of Spg029178.1 vs. NCBI nr
Match: TYJ98643.1 (hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MQTHCIGYPHSHVTYMNALDHCVCIKYKVGHIHSITRIR 40
          MQTHCIGYPHSHV YM+ALD CVCIKYK   IHS+ RIR
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYKGSCIHSVNRIR 39

[Close]
BLAST of Spg029178.1 vs. NCBI nr
Match: KAA0047449.1 (hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MQTHCIGYPHSHVTYMNALDHCVCIKYKVGHIHSITRIR 40
          MQTHCIGYPHSHV YM+ALD CVCIKYK   IHS+ RIR
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYKGSCIHSVNRIR 39

[Close]
BLAST of Spg029178.1 vs. ExPASy TrEMBL
Match: A0A5A7U1U5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00520 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MQTHCIGYPHSHVTYMNALDHCVCIKYKVGHIHSITRIR 40
          MQTHCIGYPHSHV YM+ALD CVCIKYK   IHS+ RIR
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYKGSCIHSVNRIR 39

[Close]
BLAST of Spg029178.1 vs. ExPASy TrEMBL
Match: A0A5D3BHA6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00280 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 1  MQTHCIGYPHSHVTYMNALDHCVCIKYKVGHIHSITRIR 40
          MQTHCIGYPHSHV YM+ALD CVCIKYK   IHS+ RIR
Sbjct: 1  MQTHCIGYPHSHVAYMDALDQCVCIKYKGSCIHSVNRIR 39

The following BLAST results are available for this feature:
BLAST of Spg029178.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98643.13.3e-0979.49hypothetical protein E5676_scaffold507G00280 [Cucumis melo var. makuwa][more]
KAA0047449.13.3e-0979.49hypothetical protein E6C27_scaffold498G00520 [Cucumis melo var. makuwa][more]
BLAST of Spg029178.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg029178.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1U51.6e-0979.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BHA61.6e-0979.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Spg029178.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg029178Spg029178gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg029178.1-cdsSpg029178.1-cds-scaffold12:33457719..33457905CDS
Spg029178.1-cdsSpg029178.1-cds-scaffold12:33458220..33458335CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg029178.1Spg029178.1-proteinpolypeptide