Spg028714.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg028714.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 13570349 .. 13573649 (+)
Sequence length	918
RNA-Seq Expression	Spg028714.1
Synteny	Spg028714.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGATTGATAAAGAATAAGGCGGTAAGTGATGGTTGGCGGAAAACCAAAAGAAAACGAAAGCTGTCCAAGACTGTGTTGGTTGGCAAAAAGAAGGGAAAAGGAACAAAAAAATGGAGAATCCACCAAAAAATACCGGCGAAGAAGGGAGATCCATTTATAAGTCGTCGGAATGCAAAAACCATGTACGAATGGGCAAGAAGGAGATCAGATATGGCGAAGACTAAATTTTCGAAGTTCGATCGTTGGTCGTCGGTGGTTTCGTGGCAAGAGATGAAGACTTGGAGAGGAGTTCATAGCAACAGCCACAAAGTTAGGAAGAAAGCAGAAGAAAACGAGAAGAAAAGAAGAACCGCCAATGGCGGTCGTCACCGGCAATGTCGGCGTGTGTGGCCGGAGATGAAGTTTTGGGTAATGTGTTGGCGCAAAATTAGTAAAAATATGGCGGAAGGAATAGAGGGAGACGTCCATGAAGTAAACCAATCCGAAAGAAAACAGGTTCTTGATAAAATCCGACGACGGCAATGTACGCAGAAGGTGATGAAAATTTGCCAATGAAGATGAACTATCGCATGGATAAATCTGGTAGAATTTTGCCACATCTTCTGTCATGCCTTAGTGATGTTAATCAAACGGCTAGTGAGGTTGGAAGTTTCAATATAACCCCCACATTTATCTCCCATGAAACAAAATATTTGCTCTATCCATAAGGTAGGAGGAAGTGGGAGAATTTCAATCTAGCCTCCATAGGAGGAGGTTAATACATCTTGTCAGTACGTAGCAATGTTTAATGAATAAATTTCAGTCTGATTTCCAATAAAAGTCCAATCTGGTTTTTTGTAGAGGTTTGATGCAAGATGTTGATCATAGATATGGAGCAGCGCTTTGTTATCTTGAAAAGGATTGATGGTACAACGTGTGGATTGAGGAGAGGTAACAATGGACTGACGGATGCTAGGCCAATCATCGCATTGATAACATTGTTGGAGGACAATAATCTCTTTCCATTCATCTCTAATTGTGGGCTCTTTCAATGGTGGAGTGAAGTCAGGTGATATCTTCTTTTGAAGAATCTGTTTATATGATGTATTCTGTGGATGAGAAGGCCGTCGATGTGCTTTAGTCGAGTAGTCGGAAATTAAAGAGTAGGAAAAAAAAAAAACCAACCTTGCTTATTGATTTCGAGGGTACAAGGAGACTGACAGTGACTGGAGTTTTGCAATTGATTAATCTCGCCACTCTTGTTATTTAACTTTTCCAACAATAGAGTAGAATCTTCACTCTGGAGTTCCATGAGCATAGTTCTTTGGCAAGGGTGTTGAAAGATGATGCAAGCCAATGAAGAGTAGTGAACCGAATCAAACTGAGTAGTGGATCAAATCAAAGCAGAACCAAACCAATCTGTGAACACGTAGCTTCGAACAAGATGATGTGGCAACGGAATTGTATGGGTCGAGGCAAAACACGAGACCACCGACGTCAGAAGTAGGATGCACCAATCAAGAATGGCGGATAGGGTTTCGACGGTGGCAGCAGCGGCTAGGGTTTCAAAAAGTATGGTGTCTAGGGCTTTTAGGGTTTTAGAGACGGCTAGAGTTTAACTTGTCTCTGATACCATCTTAAATTTAGGAGAATAATAGTCTCTTATTCAAATATGTGCAACCTAGGTGTCTTCTTATATAGGGAGAAAGACCCACTACAATATAAGGAAAGATTAAAGACAATAATGACTAAATATTGACAAATAGTATTTACACAATTGTAAAGACTAGAAATTCCAACACCTTCATTTGGCTGCTTGGAATTGTCTCTTGCCCACCTACTAAGGGTGGCCTTGGACTGGGAAATTTGCCGGAGAAAAACCATACTCATGGCCAAATAGCTATGGAGACATGTCCATGAAAGGTCAGCATTTAGGAGAAATTTCATACGTGCTATGTGCAAATATGGCCGTACTAATCTCGGTTGATGGCTCAATGACAAATCATCAATCTTTTTCGAGGCCTTTGATAGGATATTTGGAAATTAAAGCCCCTCATCTCATCCCCACATCTTCCAAAAGATCACAATGGCAAGACCCCAAGAATTTGGGAAGAACCATGAACGGATTCACCTTTAGATCCACCTTCCCAAATCTCTATCGGATGCCAGAGGTACAAACAAAATAGTGGCCCCCTTTGGGACAACAACTCAAATTCTTCGAATCTCACCTCAGGAGACATTTTAAAGAAGAGAGTTCGAATCTCACCTCTGGAGACATTTTAAAGAAGAGGAGTTTGAACAGCGGCTTCTTTTGATCAGTAAAACAGAGAGTCTATTGCTTGGGAACCAATCAGACTCCTAGAAGTGGCCTCTTGACCCAACAGGAACCTTGTCTTTGAAGTCTCCATAACTTTTTGGCCATAGAGAATCCCTCCCTACACCACTATTTTGTTGAAGTCATTTGGAAAGATAAATATCCCAGTAAAGTAAAAAGATTCCTTTGGGAGGTGATAACGGGCAAGATCACACTATAGATTATACGCAAAACTGAAGCCTACTACTGCACTTTCCTAAAATATTTGCAGTGTTTGTAAACTGAACAGTAAGGCCCTTAACCGTATTTTCATGAGCTGCCACTTCACCTCTGAATGCTGTTATGCAGGCTTGAAAATGATATACCCCTCTTCACAAAAACACAGTGATAATTGCCTGACTATGCTAGCAGCTCACCTGCTCAAGGTGTAGTAAAAAAAATCCCAAAAAATTATCTTTTTTATTATTATTATTATTATTTTTTATTTTTTACCGTTAATGAAACCTAGCTAGATGGTGCTCCGAACGGCCAAGTGTGGGGGCTAGTGGTAACCAGAAGTGGTCAGTGGAGACAACATATTTGGCAGCGGCTGGTGGTAAGCAAAGGTGCTAGGGTTTGTCTTTACATGGGTAGTATTTTGCCAAAATGGATCCGTTATTAAGCTTAAGAATAAACAGAATCTGGCCCAAAACATCTACCTCCAGCTCCTTTTCAACCTTGGAAAATAAATGGGCTTCTTGCTACTTCTTTAAACACAACCCACCTAGAATTAGTTGCCTAAGCCCATGGCCCAATTACTTCCAGATTTTTCTTCCTTCTGATACCTCATGTCGTGGCGTAGGTTAAGGTTCCAATTGAATTTCTTTTTCTTCTCTAGGATATGCTGCTTGCATCGAAACCTTACCCGGAACTTCATCTCCAGCCACACATGCCGACGTTACCAATAACGATTGTTTTCGGCTATTCTCCTTTTCTTCTCGTTTTCTTTCGCCTTCTTCCTAA

mRNA sequence

ATGAATCGATTGATAAAGAATAAGGCGGTAAGTGATGGTTGGCGGAAAACCAAAAGAAAACGAAAGCTGTCCAAGACTGTGTTGGTTGGCAAAAAGAAGGGAAAAGGAACAAAAAAATGGAGAATCCACCAAAAAATACCGGCGAAGAAGGGAGATCCATTTATAAGTCGTCGGAATGCAAAAACCATGTACGAATGGGCAAGAAGGAGATCAGATATGGCGAAGACTAAATTTTCGAAGTTCGATCGTTGGTCGTCGGTGGTTTCGTGGCAAGAGATGAAGACTTGGAGAGGAGTTCATAGCAACAGCCACAAAGTTAGGAAGAAAGCAGAAGAAAACGAGAAGAAAAGAAGAACCGCCAATGGCGGTCGTCACCGGCAATGTCGGCGTGTGTGGCCGGAGATGAAGTTTTGGGTAATGTGTTGGCGCAAAATTAGTAAAAATATGGCGGAAGGAATAGAGGGAGACGTCCATGAAGTAAACCAATCCGAAAGAAAACAGGTTCTTGATAAAATCCGACGACGGCAATATATGGAGCAGCGCTTTGTTATCTTGAAAAGGATTGATGGTACAACGTGTGGATTGAGGAGAGGTAACAATGGACTGACGGATGCTAGGCCAATCATCGCATTGATAACATTGTTGGAGGACAATAATCTCTTTCCATTCATCTCTAATTGTGGGCTCTTTCAATGGTGGAGTGAAGTCAGATGGTGCTCCGAACGGCCAAGTGTGGGGGCTAGTGGTAACCAGAAGTGGTCAGTGGAGACAACATATTTGGCAGCGGCTGGTGGATATGCTGCTTGCATCGAAACCTTACCCGGAACTTCATCTCCAGCCACACATGCCGACGTTACCAATAACGATTGTTTTCGGCTATTCTCCTTTTCTTCTCGTTTTCTTTCGCCTTCTTCCTAA

Coding sequence (CDS)

ATGAATCGATTGATAAAGAATAAGGCGGTAAGTGATGGTTGGCGGAAAACCAAAAGAAAACGAAAGCTGTCCAAGACTGTGTTGGTTGGCAAAAAGAAGGGAAAAGGAACAAAAAAATGGAGAATCCACCAAAAAATACCGGCGAAGAAGGGAGATCCATTTATAAGTCGTCGGAATGCAAAAACCATGTACGAATGGGCAAGAAGGAGATCAGATATGGCGAAGACTAAATTTTCGAAGTTCGATCGTTGGTCGTCGGTGGTTTCGTGGCAAGAGATGAAGACTTGGAGAGGAGTTCATAGCAACAGCCACAAAGTTAGGAAGAAAGCAGAAGAAAACGAGAAGAAAAGAAGAACCGCCAATGGCGGTCGTCACCGGCAATGTCGGCGTGTGTGGCCGGAGATGAAGTTTTGGGTAATGTGTTGGCGCAAAATTAGTAAAAATATGGCGGAAGGAATAGAGGGAGACGTCCATGAAGTAAACCAATCCGAAAGAAAACAGGTTCTTGATAAAATCCGACGACGGCAATATATGGAGCAGCGCTTTGTTATCTTGAAAAGGATTGATGGTACAACGTGTGGATTGAGGAGAGGTAACAATGGACTGACGGATGCTAGGCCAATCATCGCATTGATAACATTGTTGGAGGACAATAATCTCTTTCCATTCATCTCTAATTGTGGGCTCTTTCAATGGTGGAGTGAAGTCAGATGGTGCTCCGAACGGCCAAGTGTGGGGGCTAGTGGTAACCAGAAGTGGTCAGTGGAGACAACATATTTGGCAGCGGCTGGTGGATATGCTGCTTGCATCGAAACCTTACCCGGAACTTCATCTCCAGCCACACATGCCGACGTTACCAATAACGATTGTTTTCGGCTATTCTCCTTTTCTTCTCGTTTTCTTTCGCCTTCTTCCTAA

Protein sequence

MNRLIKNKAVSDGWRKTKRKRKLSKTVLVGKKKGKGTKKWRIHQKIPAKKGDPFISRRNAKTMYEWARRRSDMAKTKFSKFDRWSSVVSWQEMKTWRGVHSNSHKVRKKAEENEKKRRTANGGRHRQCRRVWPEMKFWVMCWRKISKNMAEGIEGDVHEVNQSERKQVLDKIRRRQYMEQRFVILKRIDGTTCGLRRGNNGLTDARPIIALITLLEDNNLFPFISNCGLFQWWSEVRWCSERPSVGASGNQKWSVETTYLAAAGGYAACIETLPGTSSPATHADVTNNDCFRLFSFSSRFLSPSS

Homology

The following BLAST results are available for this feature:

BLAST of Spg028714.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg028714.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg028714.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg028714.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..119

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg028714	Spg028714	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg028714.1-cds	Spg028714.1-cds-scaffold7:13570349..13570877	CDS
Spg028714.1-cds	Spg028714.1-cds-scaffold7:13571222..13571402	CDS
Spg028714.1-cds	Spg028714.1-cds-scaffold7:13573160..13573242	CDS
Spg028714.1-cds	Spg028714.1-cds-scaffold7:13573525..13573649	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg028714.1	Spg028714.1-protein	polypeptide