Spg028620.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg028620.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 16275004 .. 16278415 (-)
Sequence length	399
RNA-Seq Expression	Spg028620.1
Synteny	Spg028620.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGCGATTATACCCGTTCGCTGGAGGTGGATTAAAGGGAAATTGGGGCTGAAATTGTTGAGGAGGATATGGTTAAGGATAATAAACAGGTGGGGGAGCAATATTTGGATTGAAGGGAGCAAAGAGGGTGGGATTCGAGTTGGGAAACTGATTTTGCAAATTTCGATTTAGGTTTTGGGGGGGTCGAACAGGGGTGATATTTGGAGGAATCTGAGGCTGATTATTGAGAGGGGTAGCAGTTGGGGTTGGGACTGGTGTGCTGGGAGTGATGACCGGAGTTTCTTGATGCTCAGAAGAATGTCTGGAGGAAGATCCTTCTTCAATCGCCATTTTTGAAAAAAAGGTGAGCTTTAAAGCTCTGATACCATAAAGAAATACAGAGAGAGATGAGAGAATTTGTATATATTTTCTGTAAGATTTTTGTCTGAATGAATACAGCAGCAAAGAGCAGAATAAATAACGACAATGATAGCCAGATGGAGCAAAAAGAGAGGCTATCCAAAATAACAGAATTTACACACTGAAATTAGAAAAATAGACCAACAATGTATAATGATAAAAGACATTTTATCACTCATAATTCCAAATCTATGAATTATGTTGTCTAAATTCAAAAGTTTGAGAACAATTTTAATTTTTCAACAAAATAAAATGCGGCTAGTTAATTTCTAAATCATACGAGACTAAATGTTATATTTTTTTTCTTGCATGGTCAAATTAAAATTAAAATTAAAATGTATTTAGAAGTAACTATATATTTGGCCAACAAGAGCATAGCTCAACTGGCATAAAGTTGTACTGATAACCCCGAGGTCTGTGGTTCGAATCCCCCATCCCCATATTGTCAAAGAAAAAAAAAAGAAAGAAGTAACTACATATTTTTTTAATAAATTAAGAAATCATATTAATGATAAATTCTATAAGACTAATGGCATTGATTATAGAACTAAAAAAAACCCCATTAATTACATAGACATTTCAAATAACTTAGCCTTATAATATTTATTTTGAAATTTTAATTAGTGTGTATTTTAAATTTGATACTAATATAGTTTATAAACTACATGCATGGCAAATCTTCATTCTCATATTTGTTATTTAGTACTCCAAAAACAAAAAAAATTGTATGAACTATTTTGACTCAGTTATGAAACTAACTAAGATTTGCAAGTAACTATAAGCTATCTATAGATATAATATATTGCAAATTATTTATTTGAGTATCCATTAATTTTAAGATGTTGAATAATAATATAATAGGGATCTACTAGACGGAAAAAAAAAAAAATCAAGCACACTTATTAGACACTCTTAAACTTTAGTGACCTATTCGACAAAAATTGAGAATTTAAATATTTATGTGGTACTTTTTAAATTTTAGGGATCTAATAGACATAAACTCAACAACACAAAAACTTAAATTGTAATTTAACCAGAGCCAAAGAGAGTTTAGCTTAGCGGTAATTGGCATATACCTTGACCAAGAGGTTAGAGGTTCGAATCCCCCACCTCCAAATTTTGATGTACTAAAAAAAAATTTAACCAGGAAACATATTAATATTAAATTGAAAATTTGAGGATTTTCTTAACACTTTTTAAAATTGATGTTTTAATCCTTGATCTATATATATATATTTTTTTTTATGGAAAAAAAAAGTGATTACTAAAAATGGGATTTAATCATAAAAGTGGTAGGAAAACTAAAATCAGCACATAAAATAATACAGCATATTTTTAACATTTATTGAAGTAGCAAAATTGGAATGGAGTAGTTGGTACTATAATTATTCATTTGGCTTGCATGAAGAGTTGGTAAAATAAAATCATATCATTAATTAATTTTATTGCCTTATTGACCACAAGACCCTTTTGTTTTCATTAATTTATAAATAGTCCCTAACCCAATTTAGGTCAGGTATGGGGAAGAAAAATGTAAATTAATAATTTTTAGGAATTATCATTATATTTTGTTAAATTAAACTGTTGTATAATTTGTTAAGATTTTGTATAATTTTTACTTTTACTTTTCTGTAACAAAATACAAAATCTTAACCTCTCCTAACAAAATATGCAAGAATTACTGTAACTAAATACAGAATCTTAACCTCTCTTGACAAATTATTGGTAACAAAATCATAATTATTCCTAATAATTATTAATTTATAAATAGCCCCTAACCCTAATTTTTTTCTTTTTTCTTTTTTTTTTTTTTTTGCTTTTGCTTGTGAAATTTGGTGATGGAAGAGGGGAGTGGCTCTAATGATCACATTGATCATCCAAAAGCTTTCTTTATTTTTCATAATATTCCTCAACTCCTACCTGGCTATTGGGTCTCTAAATTTTTTCCTTTCTTTTTTTTTTATCCCAATTTTTGAAGATTATTATAAGTTAATTAAAAATAATGTGTGTGGTTTTCACTTAATTATTTCAACTAACTATACATTTATTTTCTTCCTTTTTCTTCAGGCTATCCCTCCCATGAATGAGAATCCAATAGAGCATTTGGATTCTACTTATCGTCATGTGGGTGAATGACCTAAATTTAATGAATCAAAGTTTAGTTTACGATCGAGTTTTCTTTAATTAAATTTTTTTTGTTGATGATAGGCAGGTAGTAGATGCAATTTTTACGAGCCTTTTGAATTTTCTAGGGAGAATAGGCGGCCTCTATATTAACTTGAGGAATCAAGGTTATCTTCAAATTCATTCTCCTCGAGCTTTTTGGGATGCTGATTCATTTCGAGAGATGTTGCGTAAGTCTATAGTAAATTAAACTTCTCATTTACCTAAAAGTTCATCGTATGAACCGAGGACTCTAACTCATCAATTGAACTAATTATTTGAAATTTACACCTTAGAAAACCTAATTGATTATTGGCTTTTTGATTTGGGAACCCATTTTTGTTTTTTTAATCATTTTTCTTGCAAAGTTTGTGTTTCTTTATAGTCTTTGTATTTATCTTTATCTTAATGATTTTATATGGCCCATCTTGATTTATTTTGAATGCAGGTGAGGTACTTAGTGAGCATAGGATTCCACAAGAGAATGATGCAATTGTTTGGCATAGAACAAATTTGCAATCTTTGTTTAATCGTTTTCCTCAAGATCGTCGAATCATAGGTGCATTTATATTATGTAATCAATTCCTTAGAAAGTGGTAGGTTTGAATCTCGAACTCTTTTTTTTTTTTAAGAAAAAAATAATAATTTAAAAAACTTAATTGAACCATGGTGGCCACCTACCTAGGATATTTAATATTCTAGTTTCCTTGCAACCAAATGTAGTAGGGTCGGTTGTCTGAGATTAGTCGAGGTGTGCGTAAACTGGCTCAGACACTCACGGATATAAAAAAAAAACTTAATTGAAACTAACTTGTTCTTATGAATGTTTACAGGTTGTTTGCCTGA

mRNA sequence

ATGGTGGGCGATTATACCCGTTCGCTGGAGGTTTTGGGGGGGTCGAACAGGGGTGATATTTGGAGGAATCTGAGGCTGATTATTGAGAGGGGTAGCAGTTGGGGTTGGGACTGGTGTGCTGGGAGTGATGACCGGAGGAGAATAGGCGGCCTCTATATTAACTTGAGGAATCAAGGTTATCTTCAAATTCATTCTCCTCGAGCTTTTTGGGATGCTGATTCATTTCGAGAGATGTTGCGTGAGGTACTTAGTGAGCATAGGATTCCACAAGAGAATGATGCAATTGTTTGGCATAGAACAAATTTGCAATCTTTGTTTAATCGTTTTCCTCAAGATCGTCGAATCATAGGTGCATTTATATTATGTAATCAATTCCTTAGAAAGTGGTTGTTTGCCTGA

Coding sequence (CDS)

ATGGTGGGCGATTATACCCGTTCGCTGGAGGTTTTGGGGGGGTCGAACAGGGGTGATATTTGGAGGAATCTGAGGCTGATTATTGAGAGGGGTAGCAGTTGGGGTTGGGACTGGTGTGCTGGGAGTGATGACCGGAGGAGAATAGGCGGCCTCTATATTAACTTGAGGAATCAAGGTTATCTTCAAATTCATTCTCCTCGAGCTTTTTGGGATGCTGATTCATTTCGAGAGATGTTGCGTGAGGTACTTAGTGAGCATAGGATTCCACAAGAGAATGATGCAATTGTTTGGCATAGAACAAATTTGCAATCTTTGTTTAATCGTTTTCCTCAAGATCGTCGAATCATAGGTGCATTTATATTATGTAATCAATTCCTTAGAAAGTGGTTGTTTGCCTGA

Protein sequence

MVGDYTRSLEVLGGSNRGDIWRNLRLIIERGSSWGWDWCAGSDDRRRIGGLYINLRNQGYLQIHSPRAFWDADSFREMLREVLSEHRIPQENDAIVWHRTNLQSLFNRFPQDRRIIGAFILCNQFLRKWLFA

Homology

[Close]

BLAST of Spg028620.1 vs. NCBI nr
Match: XP_022942054.1 (uncharacterized protein LOC111447242 [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-26
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 47  RIGGLYINLRNQGYLQIHSPRAFWDADSFREMLREVLS-EHRIPQENDAIVWHRTNLQSL 106
           R+GGLYINLR QGYLQI+SPRAFWD DSFREMLREVLS +HR+PQENDAI+WH TNLQSL
Sbjct: 65  RLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVPQENDAIIWHNTNLQSL 124

Query: 107 FNRFPQDRRIIGAFI 121
           F+  PQ+RR+IG  +
Sbjct: 125 FSLIPQERRVIGCLL 139

[Close]

BLAST of Spg028620.1 vs. NCBI nr
Match: KAG6600811.1 (hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-26
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 47  RIGGLYINLRNQGYLQIHSPRAFWDADSFREMLREVLS-EHRIPQENDAIVWHRTNLQSL 106
           R+GGLYINLR QGYLQI+SPRAFWD DSFREMLREVLS +HR+PQENDAI+WH TNLQSL
Sbjct: 65  RLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVPQENDAIIWHNTNLQSL 124

Query: 107 FNRFPQDRRIIGAFI 121
           F+  PQ+RR+IG  +
Sbjct: 125 FSLIPQERRVIGCLL 139

[Close]

BLAST of Spg028620.1 vs. NCBI nr
Match: XP_022989850.1 (uncharacterized protein LOC111486913 [Cucurbita maxima])

HSP 1 Score: 124.0 bits (310), Expect = 9.5e-25
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 47  RIGGLYINLRNQGYLQIHSPRAFWDADSFREMLREVLS-EHRIPQENDAIVWHRTNLQSL 106
           R+GGLYINL  QGYLQI+SPRAFWD DSFREMLREVLS +HR+ QENDAI+WH TNLQSL
Sbjct: 65  RLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVLQENDAIIWHNTNLQSL 124

Query: 107 FNRFPQDRRIIGAFI 121
           F+  PQ+RR+IG  +
Sbjct: 125 FSLIPQERRVIGCLL 139

[Close]

BLAST of Spg028620.1 vs. NCBI nr
Match: KAG7031448.1 (hypothetical protein SDJN02_05488 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-07
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 81  EVLS-EHRIPQENDAIVWHRTNLQSLFNRFPQDRRIIGAFI 121
           EVLS +HR+PQENDAI+WH TNLQSLF+  PQ+RR+IG  +
Sbjct: 5   EVLSDQHRVPQENDAIIWHNTNLQSLFSLIPQERRVIGCLL 45

[Close]

BLAST of Spg028620.1 vs. ExPASy TrEMBL
Match: A0A0A0KJD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 6.9e-29
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 47  RIGGLYINLRNQGYLQIHSPRAFWDADSFREMLREVLS-EHRIPQENDAIVWHRTNLQSL 106
           R+GGLYINLR QGYLQIHSPRAFW+ DSFREMLREVLS +HR+PQENDAIVWHRTNLQ+L
Sbjct: 17  RLGGLYINLRGQGYLQIHSPRAFWNVDSFREMLREVLSDQHRVPQENDAIVWHRTNLQAL 76

Query: 107 FNRFPQDRRIIGAFILCNQFL 127
           FN FP++RRIIG  +  N  L
Sbjct: 77  FNHFPRERRIIGTLLTRNFML 97

[Close]

BLAST of Spg028620.1 vs. ExPASy TrEMBL
Match: A0A6J1FQ78 (uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC111447242 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.9e-27
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 0


Query: 47  RIGGLYINLRNQGYLQIHSPRAFWDADSFREMLREVLS-EHRIPQENDAIVWHRTNLQSL 106
           R+GGLYINLR QGYLQI+SPRAFWD DSFREMLREVLS +HR+PQENDAI+WH TNLQSL
Sbjct: 65  RLGGLYINLRGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVPQENDAIIWHNTNLQSL 124

Query: 107 FNRFPQDRRIIGAFI 121
           F+  PQ+RR+IG  +
Sbjct: 125 FSLIPQERRVIGCLL 139

[Close]

BLAST of Spg028620.1 vs. ExPASy TrEMBL
Match: A0A6J1JNI2 (uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.6e-25
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 0


Query: 47  RIGGLYINLRNQGYLQIHSPRAFWDADSFREMLREVLS-EHRIPQENDAIVWHRTNLQSL 106
           R+GGLYINL  QGYLQI+SPRAFWD DSFREMLREVLS +HR+ QENDAI+WH TNLQSL
Sbjct: 65  RLGGLYINLGGQGYLQIYSPRAFWDVDSFREMLREVLSDQHRVLQENDAIIWHNTNLQSL 124

Query: 107 FNRFPQDRRIIGAFI 121
           F+  PQ+RR+IG  +
Sbjct: 125 FSLIPQERRVIGCLL 139

The following BLAST results are available for this feature:

BLAST of Spg028620.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942054.1	1.0e-26	77.33	uncharacterized protein LOC111447242 [Cucurbita moschata]	[more]
KAG6600811.1	1.0e-26	77.33	hypothetical protein SDJN03_06044, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022989850.1	9.5e-25	74.67	uncharacterized protein LOC111486913 [Cucurbita maxima]	[more]
KAG7031448.1	5.2e-07	68.29	hypothetical protein SDJN02_05488 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Spg028620.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg028620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJD0	6.9e-29	77.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G056070 PE=4 SV=1	[more]
A0A6J1FQ78	4.9e-27	77.33	uncharacterized protein LOC111447242 OS=Cucurbita moschata OX=3662 GN=LOC1114472...	[more]
A0A6J1JNI2	4.6e-25	74.67	uncharacterized protein LOC111486913 OS=Cucurbita maxima OX=3661 GN=LOC111486913...	[more]

BLAST of Spg028620.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg028620	Spg028620	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg028620.1-cds	Spg028620.1-cds-scaffold7:16275004..16275016	CDS
Spg028620.1-cds	Spg028620.1-cds-scaffold7:16275254..16275401	CDS
Spg028620.1-cds	Spg028620.1-cds-scaffold7:16275659..16275760	CDS
Spg028620.1-cds	Spg028620.1-cds-scaffold7:16278135..16278240	CDS
Spg028620.1-cds	Spg028620.1-cds-scaffold7:16278386..16278415	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg028620.1	Spg028620.1-protein	polypeptide