Spg027997.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg027997.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationscaffold2: 46773403 .. 46779386 (+)
Sequence length1017
RNA-Seq ExpressionSpg027997.1
SyntenySpg027997.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAGTGGGGACTTCGTATGCAATGAGTTTGCCTAAGACCGGACCGCGAAACAAGTCACTTTCACTTTATAACGTCGTTTACTGTTGAAACTGACTATTTCATGCGATGACCTAGGTAACTCGATCTTAATCCTGAGCTAACTATGAACTCCTGTTTATTCAGGATTATCCTTCGATTTGCATGAGTGAGAGTGGTCTATCATCGCCAACTCAATAAGCCTACCATTTTGGGGATAAGACCGGGTAGATAGCTGGGGACATAGTCTTGTAAGATAGAATTCACTCCTACCCGCCTGTAGGGATAGTAGAGGTTGTTCCCTTAAGTGCTGACTCCGGGTCCTGAACAAAGGCACGCGTCCTCTCCTGGCCCAAGAGGAACTTCTGTTTAATGGTTAGACCATAAACAAATTGTTCATTAGAGAATCAGTGGGACTTACAAATTATGCTTGTTTGTGCTTAAAAGAACTCATTTTGGTAAAAATTTGACTTGTTTTGGTGCTTTGCAGAAAAACAGAGGAATCTGGAAGAACCCAGAAATGCGACCGCATTTCTGGGAAGGCCAATATAAAATGCGACCGCATTTCTGGGCAGATGAAGGCAGTTCTGAGTCCGTCGCGGGTTGTTTTGAACGAGTGTTTTGCGCACCTAATCAGCTGTTTTGACTCCGAAACTGACCGGGTTACCTACCAGCACCATTTTCTTGACTCCTCAACCACTCCCCACACTATAAAAGGCCTCAATTCGAAGGTAAATTCAAGTAGAACTCACTGGGAAGATGAGGGTGGTGACAGTCGGGTCGATTGTACGGACAAACTGACCCGACCCGGCCCAGGGTCGGTTGTACGGACGACCCGAATTGAATCGACCCAACCCAGTTTAGAGTGACCCGAATCGGGTCGGGTCAAGTCGGGCCATCTTTTTTTTTTTTCTCTCCATAAATGGGTAGATACTTACTAAACCTTTTATTAGAATCAGTTCTTCATGTTAACAAAAATTTGAATAAACAGAGGAAATTGGATTATATGTTTAAAGAATGAACACAACAGAGGACCCCAAAACCATGGAGCAAATTCATAAGCCTTCATATTTATAAGGGGGAAAATTAAAGAATGAACACAACAGAGGACCCCAAAACCATGGAGCAAATTCATAAGCCTTCATATTTAAATGGGGGAAAATTAAAGAGTGAAGACAACATGGGACCCCAAAACCATGGAGCAAATTCATGCCAACATTTTCAACTGATCACTTCAATAAACAAAAGGTCTGATATTTCTCACAGACTAAAACTAAAATGAATATGTGATAAATTTACTATACTAAACTGAATGAGTGACTAATAAATTTCTATGAAGCATGGTTCCAGTTAGCTAAAATTAACCCAAAAGAAAAAAAAAATTGTCAACGGTTTCAAAGTCATGGTCCTAACTTAAGAAGAAAGATTTGGCAGGATGGTTTATATGAGATTTCCTTTAAAATATTTTTAAACCTCTTTTTAGCAGCTTCATTTTCTTCAAACTTCCTTTGAACTAAATACCTTTTCCACCAAGAAGGACTTCGAAGTTTGGCTTGAAAAATTTACAAACAAATTGAAGCCAAATGGTCCTTGCATTAGTAACTAAAATTCCAATCCACATACAAAATTAAGTAAAAGTAGGGATATTCAAACATAAACCAAACCCAAGTCAAAATTAAGCAAAAATAGAAACTTTATCCTCAACCACAACAACTTTTCCATTACCTTCACCAGCATAGCCATTGTCGCCCCACTCGTCATCTTCCTTCGGCGAATCGAACTCCTAGAATCTCGTGAACGAAGAGTCAGGATCCAGCTCGGCTTCCTCGCCCCACTCATCGGAGATCTTCGAGAGAGAACCAGCGGCGTTATCGTCGTTGGTAGATGCGTCGTCGGAGAGAGAGGAGCTCAGGCGAAGGGAGGGGAATCTGAGAGCTCCGGATTCTTTATGTGAGAGGTTGAAGGAGAGAAATGACGGAATAGAAGTGGTTGGGAGAGGAGAGAAGAGTGACAATTTAGGGTTTGCGGTGAAGAAGACGAAACAGTGTGAGGAAGAAGACAACAGAGAAGCCATTTTTGTGAGCTTCTGAGTTCTTCTGAGCTGTTCGAATGGACCAAGTCGGAGAGGTGACAGGCGAGGAAGAAGAAGTCGAAGAGGCGAGGCGAGGAAGACAAAGTCGAAGAGGCGAGGCGAGGAAGACGAAGTCGAAGAGGTGAGGCAAGGACTGAAACCCTAAAGTCTGAACAAAAACAGAAAACACGATTATATCGGTTCGGGCAAAGAAAAGGAGAGGACCGAACCGAACCCTATCGATTCGATTTGGTTCATAATTAAAGTGAAAAACCGAACCAAACCAGTTCGGTTCGGTTCGGTTCGACTCCTTTCATCCCTAGTGACAGAACCCTAGTAGACGCCCATGAGTAGGGATGCCCGAGGTCCTTCTTAGAAGGCTAAATTCTAACCCTTAGTTAGACATCAAACCCGAGTTTTTGTAGAGATTTCACCCTATTCCCACTTGTAAAAGGAGAGTAGAGTGTCGTGAGAACTCTAGAAGGATTGGATAAAAGAAAAAAACCCTAATTTTAGCTAAAGCACTATATTTTCCAGCACTTGTTTCTTTTCATTACTTTGTATTCTTTATTCATTATTTCAATAAAAAGTTGTTCATTTGCATTATATTTCATCATGCGTAGCTAAATTCCATTGACGGGTTCGATATAGTGAATTCCCTTATGGTTTAAATGGCTTGAAAGTGTTTATTTGCCTAAGCTTTATTCATTGCATGTCACTCTTTATTGAATATCATTCATAATCTTGCTGAGTTTAACTTGATCACTTAGACTTTGCATGCTATGTGAATTTGATCCTGAAAGGGACAAGCAATATCGGTTTTCATAAAGGTGATATAGGAAAAAAGGCTCGAAAGAGTGTATTCGGTGTTATAGGGGAAGGTCGCCTTATAAGAACTATAGGGTTATAGGTTGCATGCATGAACTATCTTGTCAGAGTCGAGTCACATAAATGTGCATAACGGTACTCGCTTAGCCTTCTAACGATTCTTGGGAGTAAGGCCAAGTAGAAGTTAAATCTGACCTAATGCATCAATAGACTTAGGTTAAATAAGCCATGATTAGAGTTGTTTTCCTTAGGGTTGAAGCTATATTGAATACCTCGCTTATTTATCATTGTTATTTCTTTACTTGTTATTTCCTTGTTTTACAAAACCCAACATCAACTATTTCTTTTGGTTACCTTTTTTAAAGCAATCTTTGAGCAGTTTCTTCTTTAAATCTGTGTTTCCAATTTAGTCCCTGTGGGATCGATACCTTTGGAATACTTCCAGAGATTTTATTACTGCATGCGATAGTGTATACTTGCACTTGGTTGACTGAATTATTCTTAATCTTTATTTATCATCTTTTCCTAACATCCACATTCAGTTCCAACACGCATCACTTGCCCTCTTTATGGCACGAGAGGGGTTTCTGTTTGATGGTTGGACCTCAAACAGGTTGTTCATTAAAAGAGCGCTGACACTTAAGGATGTAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAACTGGTGTTACGAACACTCGTGAAGGATTGACTTACTGTTATTGGTCAATATCCGTGGACACAGAAATATATCTGCAGTGAGAAGAGTACAGTTGTGGTTCTATAGTGGAGTGAACTACAGTTAAGGAATATTGGTTAACTTGGTTAATAAGTTTAGCCAATTAATCTCATATTGTTGGAGTTTCTTATCTATAGGTCCATTAGGTCCCACCGGTAGCTCATCAAGGGTGTTGAGGCATCAAGGGTGTTGAGGTAAAATTTCTAAGGGAAATAATATAATGTATCTAGATACATTATAATATAAAGTTTATATTTATATTAAACTTTATAATATAATTTATTTTGAATATTGATTCAAAATGGAGAATTAAATATTTGAAGGAGTTTGAATATTAAATTTTAATATGAATTGGATTCATATTAATACTATAGGTTAAAATTAATGTACATTAGATGCACATTCAAACTATAGGTTATACGAGAGAAATGTAATTGGATATGTGATATTCAATTTAATAATTAATTAGTTTGAGTATTAATTAATTATTTCTTTTAATTTAATTTAATTAAATTGCATTTAATTAAATTAAGTTAAAACTTTAGGTTATGTGGGAGACATACATTTATATATGATATAAATGTAATAATCAATTAAAATTGGTTTTAATTGAAAAATAATTTAATTAATTAAATAATTGTTATTTAAGTTAATTAAATAAATATATTTTATATTAATTTAAGTGCATTAGTTATGGTAACTGATGGAAGGGACGCATGACATTAATCCCTTTGATCTCTTGGTCCACTCCCTCCCCTAACCGTTGCCTGCACGATAGGGAAGTGAGTTTTCTCCTCCTTCCTTCTCTTAGGCGTGTAACAGAGTCTTGTGAGACTACGATTTATGTGATTTTGTTCTCTGAAAAAATTCTCTCAATTCTCCAATTCATTCCCTACATAAAAGAGTTCCCACAAACAACCCCAACATCAAACCCTCAGTAGTCATACTGGTTGGATTTTTATGGAGTGTTCGTGGTGATTTTCAAGGTGATTTTCCCACGAAAGGCTTACTGTAATTTTGGAAGAAAATACCCCAAGGAGTTGGTGATTCGATCAAGAATACATTCGGTAGTAAGTCATTCTTGATCTCTGAATTTCGTAGGAGAAGCATGATTAAATTAGGATTTAATCAATAAATTTTAGCATGCTATTAGCCTATTTTTTACTGTATATTATGTGATAATATTGCCGAATTTTGTCGTCGTATTGGTATTTAAAATGGGATTAAAAGTTCTGTAAATTCTTCCGTTGCGTAAGGGCTCTCATCCCTTCATTAAGTCTAGGGGTGTGCAGCGGTCGGTTGGAGTTGGTTTTTGGCCAAAACCGATGCCGAAAACCGACCATTCGGTTTTAATTGGTCGGAGGTTGTCGGTTTTTATGAGTTGGAGAGAAGAGAAGAAAAAACGTTGTCGATCTTCATCACTATTTAGTCGCAACCGATTAAAAAAAAAAGAGAGGAGAAGAGTAGAGAACGAAGAGGAGGCCGATCGGTGAACAAAGAGAAAAAGAAAGAGATGAAGAGAATAAAAATGAAGAGGAAGAGAAAGAGAAAGAGAAAGGGAGAAGAAGAATAGGGAAGAAGAGAGAAACGTGAGAGAGATAAGAAATTTAAAATAAATGTGAGAGAAAAAATAAAAATAAAGTTTTTTTTTAAAAAATTTGTCATTGGGAAGGGAAGACCATCAGGCATTAAATGCTGCAGATGGTTTTCCCTAGGCGTGGCTGCATGCATGCATTAAATGCTGCAGCAGCCACACGTCTTTTCTGCTTTTACTTTTCTTTTTTTAAAAAAAAAAAAAAAATTCAAAGTGCTTGTCGGTCGGTGTAGTCGGTTTGAGCTTTTATTAGGCTCGCCGACCGACAGACGAATCGGTTTTTGTTTTAGAAAAATCGATTCCGACCGATTTTCTTAAAAAAACCAACCGACCGACCGACGTCGGTTCTGTCGGATCGGTTTTTCGAAATATTCTGCTCACCCCTAATTAAGTCCACTGATCCTCTAATGAACAATTTGTTTATATTTCAACCACTAAATAGAGTCCTTCTCGGGCCAATGAGAGAGTGAGGCCCTTTGTTCAAGACTCTGAGTCAGCACTTAAGGGAACAATCTTTCTGCTATCCCTGATACGGGTAGGAGCAAATTTTTTCTTGCAAAACTATGTCCCTAGCTATCTATCCAGTCTTATCCCAAAAATGGTAGGCTTATTGAGTCGACGATATTGGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTGAACAAACAGGAGTTCATAGTTAGCTTAGGATTAAGATCGAGTTACCTAGGTCATCGTATGAAATAG

mRNA sequence

ATGCGAGTGGGGACTTCGTATGCAATGAGATTATCCTTCGATTTGCATGAAAAAACAGAGGAATCTGGAAGAACCCAGAAATGCGACCGCATTTCTGGGAAGGCCAATATAAAATGCGACCGCATTTCTGGGCAGATGAAGGCAGTTCTGAGTCCGTCGCGGGTTGTTTTGAACGAGTGTTTTGCGCACCTAATCAGCTGTTTTGACTCCGAAACTGACCGGGTTACCTACCAGCACCATTTTCTTGACTCCTCAACCACTCCCCACACTATAAAAGGCCTCAATTCGAAGAATCTCGTGAACGAAGAGTCAGGATCCAGCTCGGCTTCCTCGCCCCACTCATCGGAGATCTTCGAGAGAGAACCAGCGGCGTTATCGTCGTTGGTAGATGCGTCGTCGGAGAGAGAGGAGCTCAGGCGAAGGGAGGGGAATCTGAGAGCTCCGGATTCTTTATGTGAGAGGTTGAAGGAGAGAAATGACGGAATAGAAGTGGTTGGGAGAGGAGAGAAGAGTGACAATTTAGGTCGGAGAGGTGACAGGCGAGGAAGAAGAAGTCGAAGAGGCGAGGCGAGGAAGACAAAGTCGAAGAGGCGAGGCGAGGAAGACGAAGTCGAAGAGTTCCAACACGCATCACTTGCCCTCTTTATGGCACGAGAGGGGTTTCTGTTTGATGGTTGGACCTCAAACAGGTTGTTCATTAAAAGAGCGCTGACACTTAAGGATGTAGAGAGTCCTTCTCGGGCCAATGAGAGAGTGAGGCCCTTTGTTCAAGACTCTGAGTCAGCACTTAAGGGAACAATCTTTCTGCTATCCCTGATACGGGTAGGAGCAAATTTTTTCTTGCAAAACTATGTCCCTAGCTATCTATCCAGTCTTATCCCAAAAATGGTAGGCTTATTGAGTCGACGATATTGGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTGAACAAACAGGAGTTCATAGTTAGCTTAGGATTAAGATCGAGTTACCTAGGTCATCGTATGAAATAG

Coding sequence (CDS)

ATGCGAGTGGGGACTTCGTATGCAATGAGATTATCCTTCGATTTGCATGAAAAAACAGAGGAATCTGGAAGAACCCAGAAATGCGACCGCATTTCTGGGAAGGCCAATATAAAATGCGACCGCATTTCTGGGCAGATGAAGGCAGTTCTGAGTCCGTCGCGGGTTGTTTTGAACGAGTGTTTTGCGCACCTAATCAGCTGTTTTGACTCCGAAACTGACCGGGTTACCTACCAGCACCATTTTCTTGACTCCTCAACCACTCCCCACACTATAAAAGGCCTCAATTCGAAGAATCTCGTGAACGAAGAGTCAGGATCCAGCTCGGCTTCCTCGCCCCACTCATCGGAGATCTTCGAGAGAGAACCAGCGGCGTTATCGTCGTTGGTAGATGCGTCGTCGGAGAGAGAGGAGCTCAGGCGAAGGGAGGGGAATCTGAGAGCTCCGGATTCTTTATGTGAGAGGTTGAAGGAGAGAAATGACGGAATAGAAGTGGTTGGGAGAGGAGAGAAGAGTGACAATTTAGGTCGGAGAGGTGACAGGCGAGGAAGAAGAAGTCGAAGAGGCGAGGCGAGGAAGACAAAGTCGAAGAGGCGAGGCGAGGAAGACGAAGTCGAAGAGTTCCAACACGCATCACTTGCCCTCTTTATGGCACGAGAGGGGTTTCTGTTTGATGGTTGGACCTCAAACAGGTTGTTCATTAAAAGAGCGCTGACACTTAAGGATGTAGAGAGTCCTTCTCGGGCCAATGAGAGAGTGAGGCCCTTTGTTCAAGACTCTGAGTCAGCACTTAAGGGAACAATCTTTCTGCTATCCCTGATACGGGTAGGAGCAAATTTTTTCTTGCAAAACTATGTCCCTAGCTATCTATCCAGTCTTATCCCAAAAATGGTAGGCTTATTGAGTCGACGATATTGGGCCACTCTCACCCATGCAAATCAAAGGATAATCCTGAACAAACAGGAGTTCATAGTTAGCTTAGGATTAAGATCGAGTTACCTAGGTCATCGTATGAAATAG

Protein sequence

MRVGTSYAMRLSFDLHEKTEESGRTQKCDRISGKANIKCDRISGQMKAVLSPSRVVLNECFAHLISCFDSETDRVTYQHHFLDSSTTPHTIKGLNSKNLVNEESGSSSASSPHSSEIFEREPAALSSLVDASSEREELRRREGNLRAPDSLCERLKERNDGIEVVGRGEKSDNLGRRGDRRGRRSRRGEARKTKSKRRGEEDEVEEFQHASLALFMAREGFLFDGWTSNRLFIKRALTLKDVESPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGHRMK
Homology
[Close]
BLAST of Spg027997.1 vs. NCBI nr
Match: KAA0047869.1 (hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-10
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 0 

Query: 244 SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRR 303
           +PSRANE+V P VQD +S LKGT +LLS   VG N  L     +  S L PK    L +R
Sbjct: 49  NPSRANEKVGPLVQDLDSVLKGTTYLLSQKWVGVNSVLHPMSLAIHSVLSPKWEA-LGQR 108

Query: 304 YWATLTHANQRIILNKQEFIVSLGLRSSYLGH 336
                T+ + RI+ N+Q+FIVS GLRSSYLGH
Sbjct: 109 QKVARTYEDLRILSNEQKFIVSSGLRSSYLGH 139

[Close]
BLAST of Spg027997.1 vs. NCBI nr
Match: TYK16320.1 (retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 1.9e-08
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 277 ANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGHR 336
           + F    YVPSY   L P+M GLL +RY A LT+A+ RI+LN+Q+FIVSLGLRSSYLG  
Sbjct: 812 SEFHFAPYVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYLGEE 871

Query: 337 M 338
           +
Sbjct: 872 I 872

[Close]
BLAST of Spg027997.1 vs. NCBI nr
Match: KAA0054446.1 (hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa] >TYK14593.1 hypothetical protein E5676_scaffold552G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-05
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 254 PFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQ 313
           P+VQD +S LKGT +LL+L  VG N  L    P+   SL  K             T+A+ 
Sbjct: 6   PYVQDLDSVLKGTTYLLTLKWVGVNSILLPMFPTIHLSLSLKWKAYWGNANELPFTYADL 65

Query: 314 RIILNKQEFIVSLGLRSSYLGH 336
           RII  +QEF VS GLR SYLGH
Sbjct: 66  RIISCEQEFTVSSGLRLSYLGH 87

[Close]
BLAST of Spg027997.1 vs. NCBI nr
Match: KAA0047518.1 (gag-protease polyprotein [Cucumis melo var. makuwa] >TYK26487.1 gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 9.6e-05
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 243 ESPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSY 289
           ++PSRANE+V P VQD +S LKGT +LLS   VG NF L  YVPSY
Sbjct: 35  QNPSRANEKVGPLVQDLDSVLKGTTYLLSQKWVGVNFHLAPYVPSY 80

[Close]
BLAST of Spg027997.1 vs. ExPASy TrEMBL
Match: A0A5A7U348 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001380 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 9.7e-11
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 0 

Query: 244 SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRR 303
           +PSRANE+V P VQD +S LKGT +LLS   VG N  L     +  S L PK    L +R
Sbjct: 49  NPSRANEKVGPLVQDLDSVLKGTTYLLSQKWVGVNSVLHPMSLAIHSVLSPKWEA-LGQR 108

Query: 304 YWATLTHANQRIILNKQEFIVSLGLRSSYLGH 336
                T+ + RI+ N+Q+FIVS GLRSSYLGH
Sbjct: 109 QKVARTYEDLRILSNEQKFIVSSGLRSSYLGH 139

[Close]
BLAST of Spg027997.1 vs. ExPASy TrEMBL
Match: A0A5D3CY86 (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001000 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.1e-09
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 277 ANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQRIILNKQEFIVSLGLRSSYLGHR 336
           + F    YVPSY   L P+M GLL +RY A LT+A+ RI+LN+Q+FIVSLGLRSSYLG  
Sbjct: 812 SEFHFAPYVPSYPLDLTPEMGGLLGQRYRAALTYADLRILLNEQKFIVSLGLRSSYLGEE 871

Query: 337 M 338
           +
Sbjct: 872 I 872

[Close]
BLAST of Spg027997.1 vs. ExPASy TrEMBL
Match: A0A5D3CRT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00950 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.2e-06
Identity = 38/82 (46.34%), Postives = 46/82 (56.10%), Query Frame = 0 

Query: 254 PFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRRYWATLTHANQ 313
           P+VQD +S LKGT +LL+L  VG N  L    P+   SL  K             T+A+ 
Sbjct: 6   PYVQDLDSVLKGTTYLLTLKWVGVNSILLPMFPTIHLSLSLKWKAYWGNANELPFTYADL 65

Query: 314 RIILNKQEFIVSLGLRSSYLGH 336
           RII  +QEF VS GLR SYLGH
Sbjct: 66  RIISCEQEFTVSSGLRLSYLGH 87

[Close]
BLAST of Spg027997.1 vs. ExPASy TrEMBL
Match: A0A5D3DRY2 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00550 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.7e-05
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 243 ESPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSY 289
           ++PSRANE+V P VQD +S LKGT +LLS   VG NF L  YVPSY
Sbjct: 35  QNPSRANEKVGPLVQDLDSVLKGTTYLLSQKWVGVNFHLAPYVPSY 80

[Close]
BLAST of Spg027997.1 vs. ExPASy TrEMBL
Match: A0A5A7TV85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G00550 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.2e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0 

Query: 244 SPSRANERVRPFVQDSESALKGTIFLLSLIRVGANFFLQNYVPSYLSSLIPKMVGLLSRR 303
           +PSRANE+VRPFVQD +S LKGT +LLS   VG N  L +     +S  I  ++ L    
Sbjct: 49  NPSRANEKVRPFVQDLDSVLKGTTYLLSQKWVGVNSVLHS-----MSLAIHSVLSLKLEA 107

Query: 304 YWAT 308
           YWA+
Sbjct: 109 YWAS 107

The following BLAST results are available for this feature:
BLAST of Spg027997.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0047869.12.0e-1051.09hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa][more]
TYK16320.11.9e-0859.02retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa][more]
KAA0054446.11.5e-0546.34hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa] >TYK1459... [more]
KAA0047518.19.6e-0563.04gag-protease polyprotein [Cucumis melo var. makuwa] >TYK26487.1 gag-protease pol... [more]
BLAST of Spg027997.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg027997.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U3489.7e-1151.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CY869.1e-0959.02Retrotransposon protein, putative, Ty3-gypsy subclass OS=Cucumis melo var. makuw... [more]
A0A5D3CRT67.2e-0646.34Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DRY24.7e-0563.04Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7TV855.2e-0448.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg027997.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 100..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..179

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg027997Spg027997gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg027997.1-cdsSpg027997.1-cds-scaffold2:46773403..46773430CDS
Spg027997.1-cdsSpg027997.1-cds-scaffold2:46773568..46773589CDS
Spg027997.1-cdsSpg027997.1-cds-scaffold2:46773911..46774151CDS
Spg027997.1-cdsSpg027997.1-cds-scaffold2:46775208..46775440CDS
Spg027997.1-cdsSpg027997.1-cds-scaffold2:46775540..46775633CDS
Spg027997.1-cdsSpg027997.1-cds-scaffold2:46776862..46776972CDS
Spg027997.1-cdsSpg027997.1-cds-scaffold2:46779099..46779386CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg027997.1Spg027997.1-proteinpolypeptide