Spg027964.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg027964.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	translation initiation factor eIF-2B subunit beta-like
Location	scaffold2: 44303467 .. 44306668 (-)
Sequence length	426
RNA-Seq Expression	Spg027964.1
Synteny	Spg027964.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAATTTCTCTCTCCCCGACCTGAAATTTCTCTCCCCCGAAAAAACCCTCAAAACTTTTCTCCCTCCCGTGTCTCTTTCTCCTTCCTCTCGATCTCCCTCTCGTCTTCTCCTAGATCAACCGCACCAGCACCACCAAATCGCCGCAGGTATGTTTGACGCACCAGCACCACCAAGTCGCCGCAGGTATGTTTGTAGCAATCTCCTTGTATTCCTTCTTTTTCTGAAACTTATTAGGTTTTGTTTTTAGGTATGTTCAAATTTAGTGCCCCAAAAATCCACCGGAGTCCAATTTCAACCCGAAATAGGAAAAGAAGAAAAGGGCAGAGAAGAAGAAGAAGAGAGAACTGAAGAACTTCTCACTTTCGACTTCCAGTTCCAGAACGAAGCGCAGATTCCATTGTTGCAGCTCGCACCGGAGCTTCCTTCCAATCTCTTCATCTCTGTAGCCGGTGGCAACCCTCTTCTTCCCCATTCCATTCTTCCATATTCTCTGTAAGTATTACGTGTTACCAATTTTTCTCCGTTATGTATATTCTCTCTATCTTGAGCCTTTTCGTTTTTCTCTGTTTAGGATTATGCCAGACGTGCTAGCCCTTGTGAATGATTTCGTTATCAAGCTCAAGAAGCAGTTAGTTCTTTGGGATTGGTGATATTTCTGAAAATTGAGTTGTAGCCTATGTTTTAGTTTTTTCGTTTTTATGGTTCGCTTTGTGATGATATTGTGGCAGTAAAATTGAGGGCTCCTTGGCCACCGCGAAGCATACGGCTAAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACGAACCAGGCGGCTGCTTTAATTCGTGCTGGGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGGTATACATTAATTTATTAGTTCTGTTTATTATGACTTAATGTTTAACCTCAGTTTAGTTGTTTGGAAATTTACCCTTTGCATAATTATATTCAATTTGTTTCCATGGCTGGTTCTTTATTCAGGCTGAAAATGAATTGTTAATCACCTCTCAATTATCATTATTCGTTCTTGGCCATGTTTGTTGCGTACACTGTCCTTATGTGATGGTCTATAGTTGTACTTTACTATTACTTATTGAAAACACTTTCTGCGTTTATGTATAAACCTTTCAAGGTTCACGTAATGGTGAAGGATCATCAATGGTGTCCATTGGATTATTATATCAATCGAATTTACCATTCATTGGTTAGACAAGCATATCTTCATTGTGGCGATTTTTCATTTTATTTACATCTGTCATCTGTTTGAAGTAGTAGAAATTAAGTTGTAAGCATGCTATGTGTGTTAAATTGGTCTAAAACAAATTGTCCTCATTTCCAGGTTCTTTGTATTATTTGATTTCTACAATGAATTCTAAACAAAATATCAGAGGCAGTAGGGTATATTTTATTTTTCTTTGTTATAGCACCTCGCTGCAAGGAAAGAGAAGTCTGCACTCCGAGCTGTGCATGTCATCTTATATAAGTCCGCCAAATGCTTCTTTAACTTTGAACAGGATGGAGTTAAGTGATATGTGTGTTATATGCTGCTGATTTTGATTTAGTCTGTACTTTTCATGAGTCATGTGTATTTATTTGGGTGATCTCTTTTCTTTAGAAAATAAGTTTATTGGGTTTTGTTTTTCTGGTTTGACGTTGTTTTTTTATTGGGTTTATTTGTCTGACCATCTCATTTTATTTTTTTTCTACTTTCGAGACAAAACACACATGCAGGCAACATAACTTTTTTTTGCCTTTCCTCTTCCTCTTGGGTTTTTTTTATTGGGTTTTTCTTTGCTTTTGAGTTTTCTTTTGGTTGTTTTATTTTCTAATCTCTATTATTTTGGTTGTGAGCTTTATGTTCTTTGTTGCATTTTCTTGCCACAACTGGACATAGAAGCACCATGAAAGGAAAGAACATATCTATTTATTTACTTATTCATTTACTTCTGGTTGTTTCTTTGTAATTAGTTTTTAAGTAACAAACAGATGGAGCTTTTGTGTTCATGCTGAACCCCATCACTTTATATTGTTAAGTTTCCTTTAGAATCTTCTACAACAAGTGTGATAAGGAAAAACTTCCTTTCCTTTTAGGATTGGCTATAACATGACTTCAGATGCAGAGAAAAGTGGTCTTATCACTCTGAGGAAGGTTAGCAATTTAGAATGATCTTTTAAAATCCAAGTGTAAACTGCAATGTTTTGGGGTGCAAAGATCAGGCTAGTTTGGTTGATTCCCCAATTGCCTTGTTGCTGTGTTATTTCCTGCAAATCATTGGAATTTAAACAAATTACTTGGGGAATTTAAACAAATAATGAGAAGGTTCCTTAGTTTTTAATCCCATTTTTGGCATCTATAGTGTTTGATTTTTGATCTATGGTATTTTTGGACAGTTTTATGAGTTCCATGGACAACTTGTTGATGCATTATGTGATATTATGCATTTTTTTTTGTTTGTGTTTCTAGAATATCGTCAGGACATTGGTTGACATTGGTTGTTCATTTTGCCTATTACCGATGGTTCATTTTAGATACTTTCTGTTGTTAGACTTCTTCAAGGTGAGGTCGACCAATGGTGTCTATGATAAAAGTTGAGAAGACACCTTTAGAGTTATAGGCTTTCAAAGGTGAGTGTTTGACTCTCTAATTAAATTCGTGTTATTTCTACCCTTATGAATCTATTTATAGTTTCAGCTACCCAGATATTCTCTAAAAACTTAGATGAATAGATGTGTCTCGCGTGCTCTCCTCTTCGTGAATGTTGATTCTTAACACAAGTTTTGATATGTTTCCTAATTGGTGAGGATTTTCTTTGTTATTAAGCTAATTTAATGAGTAATTAAACTTTGGGACCTTGGAGGGCAAAGGAGATTTCGTACAATGTGGGAGCAATATTGTCGTGGCGTGACTACAATTGTGTAAATATCCCAAGTCTCTAAACTTTTATCCATTTTAGCTAGACTTGTTACTTTAGCTTACAATATGTGGCTGATTGTTTATCTTTATTTAACTTTGCTTACTGCTCTTAAGGTCACAAGAAATTGTCTTTACCTGTTTTCTTCATGTAGGATGCTAGTATATGAATATGTGAACAATGGAAATCTAGAAAAGTGGTTGCTTGGAGCCATGTGCCAACACGACACACTTACTTGGAAGGCTTGCATGAAGGTGCTTCTT

mRNA sequence

ATGTTTGACGCACCAGCACCACCAAGTCGCCGCAGAGAAGAAGAAGAAGAGAGAACTGAAGAACTTCTCACTTTCGACTTCCAGTTCCAGAACGAAGCGCAGATTCCATTGTTGCAGCTCGCACCGGAGCTTCCTTCCAATCTCTTCATCTCTGTAGCCGGTGGCAACCCTCTTCTTCCCCATTCCATTCTTCCATATTCTCTGATTATGCCAGACGTGCTAGCCCTTGTGAATGATTTCGTTATCAAGCTCAAGAAGCATAAAATTGAGGGCTCCTTGGCCACCGCGAAGCATACGGCTAAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACGAACCAGGCGGCTGCTTTAATTCGTGCTGGGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGGTATACATTAA

Coding sequence (CDS)

ATGTTTGACGCACCAGCACCACCAAGTCGCCGCAGAGAAGAAGAAGAAGAGAGAACTGAAGAACTTCTCACTTTCGACTTCCAGTTCCAGAACGAAGCGCAGATTCCATTGTTGCAGCTCGCACCGGAGCTTCCTTCCAATCTCTTCATCTCTGTAGCCGGTGGCAACCCTCTTCTTCCCCATTCCATTCTTCCATATTCTCTGATTATGCCAGACGTGCTAGCCCTTGTGAATGATTTCGTTATCAAGCTCAAGAAGCATAAAATTGAGGGCTCCTTGGCCACCGCGAAGCATACGGCTAAATTGCTTCGTTCTGTCATTTCGCAGCAGCGAATACCCTACACGAACCAGGCGGCTGCTTTAATTCGTGCTGGGAAAGCTGTTGGCGAGCAGCTGATTGCTGCGAATCCTGTTGGTATACATTAA

Protein sequence

MFDAPAPPSRRREEEEERTEELLTFDFQFQNEAQIPLLQLAPELPSNLFISVAGGNPLLPHSILPYSLIMPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVGEQLIAANPVGIH

Homology

[Close]

BLAST of Spg027964.1 vs. NCBI nr
Match: KAG6579110.1 (E3 ubiquitin-protein ligase DIS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 8.6e-32
Identity = 85/129 (65.89%), Postives = 95/129 (73.64%), Query Frame = 0


Query: 10  RRREEEEERTEELLTFDFQFQNEAQIPLLQLAPELPSNLFISVAGGNPLLPHSILPYSLI 69
           +++   +E  + +LT     + + +          PSN FISVAGG    PH ILPYSLI
Sbjct: 9   QKKGPRKEELKNVLTSASSSRTKPRFHCCNSDRSFPSNFFISVAGGIHRFPHFILPYSLI 68

Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVIS QRIPYTNQAAALI A KAVG
Sbjct: 69  MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISHQRIPYTNQAAALIDAVKAVG 128

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 129 EQLIAANPV 137

[Close]

BLAST of Spg027964.1 vs. NCBI nr
Match: XP_022990650.1 (translation initiation factor eIF-2B subunit beta-like [Cucurbita maxima])

HSP 1 Score: 117.9 bits (294), Expect = 7.3e-23
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVISQQRIPYTNQAAALI A KAVG
Sbjct: 1   MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. NCBI nr
Match: XP_022923286.1 (translation initiation factor eIF-2B subunit beta-like [Cucurbita moschata] >XP_023535169.1 translation initiation factor eIF-2B subunit beta-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 7.3e-23
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVISQQRIPYTNQAAALI A KAVG
Sbjct: 1   MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. NCBI nr
Match: XP_038874367.1 (translation initiation factor eIF-2B subunit beta [Benincasa hispida] >XP_038874368.1 translation initiation factor eIF-2B subunit beta [Benincasa hispida])

HSP 1 Score: 117.5 bits (293), Expect = 9.5e-23
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLK+ KIEGSLATAKHTA+LLRSVISQQRIPYTNQAAALI A KAVG
Sbjct: 1   MPDVQALVNDFVIKLKRRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIEAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. NCBI nr
Match: KAG7032647.1 (Translation initiation factor eIF-2B subunit beta [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-22
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVISQQRIPYTNQAAALI A K+VG
Sbjct: 1   MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKSVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. ExPASy TrEMBL
Match: A0A6J1JQN6 (translation initiation factor eIF-2B subunit beta-like OS=Cucurbita maxima OX=3661 GN=LOC111487472 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVISQQRIPYTNQAAALI A KAVG
Sbjct: 1   MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. ExPASy TrEMBL
Match: A0A6J1E6E7 (translation initiation factor eIF-2B subunit beta-like OS=Cucurbita moschata OX=3662 GN=LOC111431025 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.5e-23
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVISQQRIPYTNQAAALI A KAVG
Sbjct: 1   MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISQQRIPYTNQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. ExPASy TrEMBL
Match: A0A6J1JUB9 (translation initiation factor eIF-2B subunit beta-like OS=Cucurbita maxima OX=3661 GN=LOC111488975 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVIS QRIPYTNQAAALI A KAVG
Sbjct: 1   MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISHQRIPYTNQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. ExPASy TrEMBL
Match: A0A6J1FNF3 (translation initiation factor eIF-2B subunit beta-like OS=Cucurbita moschata OX=3662 GN=LOC111445501 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-22
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVIS QRIPYTNQAAALI A KAVG
Sbjct: 1   MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISHQRIPYTNQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. ExPASy TrEMBL
Match: A0A1S3CPD3 (translation initiation factor eIF-2B subunit beta OS=Cucumis melo OX=3656 GN=LOC103503289 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-22
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV ALVNDFVIKLKK KIEGSLATAKHTA+LLRSVIS QRIPYTNQAAALI A KAVG
Sbjct: 1   MPDVQALVNDFVIKLKKRKIEGSLATAKHTAELLRSVISAQRIPYTNQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. TAIR 10
Match: AT3G07300.1 (NagB/RpiA/CoA transferase-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV + V +FV KL+K KIEGS ATAK+T +LLRSVIS QR+P+ NQAAALI A KAVG
Sbjct: 1   MPDVQSTVVEFVNKLRKRKIEGSQATAKYTVELLRSVISHQRVPHANQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. TAIR 10
Match: AT3G07300.2 (NagB/RpiA/CoA transferase-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV + V +FV KL+K KIEGS ATAK+T +LLRSVIS QR+P+ NQAAALI A KAVG
Sbjct: 1   MPDVQSTVVEFVNKLRKRKIEGSQATAKYTVELLRSVISHQRVPHANQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

[Close]

BLAST of Spg027964.1 vs. TAIR 10
Match: AT3G07300.3 (NagB/RpiA/CoA transferase-like superfamily protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.4e-19
Identity = 51/69 (73.91%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 70  MPDVLALVNDFVIKLKKHKIEGSLATAKHTAKLLRSVISQQRIPYTNQAAALIRAGKAVG 129
           MPDV + V +FV KL+K KIEGS ATAK+T +LLRSVIS QR+P+ NQAAALI A KAVG
Sbjct: 1   MPDVQSTVVEFVNKLRKRKIEGSQATAKYTVELLRSVISHQRVPHANQAAALIDAVKAVG 60

Query: 130 EQLIAANPV 139
           EQLIAANPV
Sbjct: 61  EQLIAANPV 69

The following BLAST results are available for this feature:

BLAST of Spg027964.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6579110.1	8.6e-32	65.89	E3 ubiquitin-protein ligase DIS1, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022990650.1	7.3e-23	92.75	translation initiation factor eIF-2B subunit beta-like [Cucurbita maxima]	[more]
XP_022923286.1	7.3e-23	92.75	translation initiation factor eIF-2B subunit beta-like [Cucurbita moschata] >XP_...	[more]
XP_038874367.1	9.5e-23	91.30	translation initiation factor eIF-2B subunit beta [Benincasa hispida] >XP_038874...	[more]
KAG7032647.1	1.6e-22	91.30	Translation initiation factor eIF-2B subunit beta [Cucurbita argyrosperma subsp....	[more]

BLAST of Spg027964.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg027964.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JQN6	3.5e-23	92.75	translation initiation factor eIF-2B subunit beta-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1E6E7	3.5e-23	92.75	translation initiation factor eIF-2B subunit beta-like OS=Cucurbita moschata OX=...	[more]
A0A6J1JUB9	1.3e-22	91.30	translation initiation factor eIF-2B subunit beta-like OS=Cucurbita maxima OX=36...	[more]
A0A6J1FNF3	1.3e-22	91.30	translation initiation factor eIF-2B subunit beta-like OS=Cucurbita moschata OX=...	[more]
A0A1S3CPD3	1.8e-22	91.30	translation initiation factor eIF-2B subunit beta OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of Spg027964.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07300.1	1.4e-19	73.91	NagB/RpiA/CoA transferase-like superfamily protein	[more]
AT3G07300.2	1.4e-19	73.91	NagB/RpiA/CoA transferase-like superfamily protein	[more]
AT3G07300.3	1.4e-19	73.91	NagB/RpiA/CoA transferase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45859:SF2	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA-LIKE	coord: 70..139
None	No IPR available	PANTHER	PTHR45859	TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA	coord: 70..139

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg027964	Spg027964	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg027964.1-three_prime_utr	Spg027964.1-three_prime_utr-scaffold2:44303467..44305772	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg027964.1-cds	Spg027964.1-cds-scaffold2:44305773..44305938	CDS
Spg027964.1-cds	Spg027964.1-cds-scaffold2:44306039..44306095	CDS
Spg027964.1-cds	Spg027964.1-cds-scaffold2:44306175..44306342	CDS
Spg027964.1-cds	Spg027964.1-cds-scaffold2:44306484..44306518	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg027964.1-five_prime_utr	Spg027964.1-five_prime_utr-scaffold2:44306519..44306668	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg027964.1	Spg027964.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005851	eukaryotic translation initiation factor 2B complex
molecular_function	GO:0005085	guanyl-nucleotide exchange factor activity
molecular_function	GO:0003743	translation initiation factor activity