Spg027383.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg027383.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 42988101 .. 42988766 (+)
Sequence length	351
RNA-Seq Expression	Spg027383.1
Synteny	Spg027383.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCGATCGAGGAGGAAGATGCATCATCCAACACACCAAGATGAGTGGGCATTGATGTCACAAGAAGGCACGAGCATATTGAGAAGCAACAGTGTCGTCAGACGCGTCAGTGGTATGCTTAATGGGGGTCAGATGGGGCCTCGGGCCATGACCTCGGAAGTCGGGGTTCCGTCGTGAGTTTTGACGAGCGGCTTTGGAGTTAAGTGCATATGAGTGAAGAATGCAAGCCCGCAAAGTTTCGTGTCAATCGGACACCAGACGGGCGCTCCACGTTGGCGTATGACTCCTCGTGAATATGACGTGCAAGGGTGTCAGACCAAATATGCCTCAGAATGCACTATAGGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCCTGTGGCCTAAGTGAGCTACCCCATGGCACATGCGTGTGTCATGGCGTGGGCGAGCGTTGCAAGACGAGTGTCTTGGGCGTCTTCCTTTGGGAATGGGTTTCCAAGGACAGTGTCGGGCGGCACGGGTGTGCCGACATTGCGCCCCCGCCCATAGGCTAGAGGTTGCACCATATGGCCGGGCTGCGGCACGCTATACGAAAATGACTCGGCATGACGCGGAAGGGTTCATGCCTCGATATGCCCGGATGGATGGATGTCCGGGAGGCCCCGATCATAAGTAA

mRNA sequence

ATGATGCGATCGAGGAGGAAGATGCATCATCCAACACACCAAGATGAGTGGGCATTGATGTCACAAGAAGGCACGAGCATATTGAGAAGCAACAGTGTCGTCAGACGCGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCCTGTGGCCTAAGTGAGCTACCCCATGGCACATGCTGTCGGGCGGCACGGGTGTGCCGACATTGCGCCCCCGCCCATAGGCTAGAGGTTGCACCATATGGCCGGGCTGCGGCACGCTATACGAAAATGACTCGGCATGACGCGGAAGGGTTCATGCCTCGATATGCCCGGATGGATGGATGTCCGGGAGGCCCCGATCATAAGTAA

Coding sequence (CDS)

ATGATGCGATCGAGGAGGAAGATGCATCATCCAACACACCAAGATGAGTGGGCATTGATGTCACAAGAAGGCACGAGCATATTGAGAAGCAACAGTGTCGTCAGACGCGGGGAGGCATGGTGTCAGCTCTCCACCACCCCTGGGCCCTGTGGCCTAAGTGAGCTACCCCATGGCACATGCTGTCGGGCGGCACGGGTGTGCCGACATTGCGCCCCCGCCCATAGGCTAGAGGTTGCACCATATGGCCGGGCTGCGGCACGCTATACGAAAATGACTCGGCATGACGCGGAAGGGTTCATGCCTCGATATGCCCGGATGGATGGATGTCCGGGAGGCCCCGATCATAAGTAA

Protein sequence

MMRSRRKMHHPTHQDEWALMSQEGTSILRSNSVVRRGEAWCQLSTTPGPCGLSELPHGTCCRAARVCRHCAPAHRLEVAPYGRAAARYTKMTRHDAEGFMPRYARMDGCPGGPDHK

Homology

The following BLAST results are available for this feature:

BLAST of Spg027383.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg027383.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg027383.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg027383.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg027383	Spg027383	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg027383.1-cds	Spg027383.1-cds-scaffold7:42988101..42988208	CDS
Spg027383.1-cds	Spg027383.1-cds-scaffold7:42988447..42988518	CDS
Spg027383.1-cds	Spg027383.1-cds-scaffold7:42988596..42988766	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg027383.1	Spg027383.1-protein	polypeptide