Spg026692.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg026692.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationscaffold6: 19818376 .. 19830200 (+)
Sequence length729
RNA-Seq ExpressionSpg026692.1
SyntenySpg026692.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAAGACCCATGTTGAACGACTTGTAGAAATCGAAGAGCAGCTGCTCTACTTGAGAGAGGTCCCAGATTCAGTTCGGTTCTTGGAATCTCGCCTGGAAGAGATTGCGACCAAGACGGACAAAATTGATGCAGTATCTGGCCGCCTGGATGGAATGCCCATCAAAGAGTTATTAATGAGGGTTGAGAACCTCGAAGAAAAAGGTACAAGACCTGGTAGCTTCGAGCGTGGGGACAGCTCGACGGGCTCTGTCGCCCTGATGGAGGAGCGTGTCGATGGTTTAGACAGCTCCCAAAAAGCAATAGTTCAGATGGTCACAGAATTGTCTGAAGATGTGAAAACGACCCTTGATGTCGTCAGGACTGAAGTGGCGGATTTAAGCGCCAGACTAAACCTCACCATGAGAGCGATGGGGAACCAAGCCCCGGCAGGGGGTGCGGTCCAGTTAAACAAAGTGAAAGTCCCTGAGCCGAAACCCTTCTGTGGGGTTCGAGATGCCAAAGCCCTGGAGAACTTCATCTTCGATCTAGAACAGTACTTCAGGGCCACGAATACCACAACAGAGGAATCGAAAATCACCTTGGCGACCATGCACCTGGCAGACGACGCCAAGTTGTGGTGGAGGTCCAGCTACAGGGACGCTCAAGAAGGTCGATGTGTCATTGACACATGGGAAAGACTGAAACAAGAGCTACGTTCGCAGTTCTTCCCAGAGAATGTTGAGATTTTGGCACGACGTAAGTTACGCAAGTTGAAACACACAGGAACTATTCGAGAGTATGTCAAACAGTTTTCTGGGCTAATGTTGGACATACAGGACATGTCAGAGAAAGATAAGGTCTTCTGTTTTATAGAGGGATTGAAATCGTAGGCAAAGTCCAAGCTTTATGAACAGAGAGTACAGTCACTATCAGACGCTTATGCAGCTGCAGAACGTCTGTTCGATCTTAGCAATGACCAGTCCCCAGAGAGATCCAACGTGTGTTGGACAAGTATCGTGATGTAATGCCCGATAGTCTGCCCAAGACCCTACCTCCACGCCGGGGGATAGACCACGAAATTGAACTATTATCAGGGGCGAGACCGCCCGCTAAAAATGCTTACCGCATGGCGCCGCCAGAGTTAGCCGAACTCCGAAAGCAGCTAGACGAGTTACTGAATGTTGGGTTCATCAGACCCGCCAAGGCTCCATATGGGGCCCCAGTGTTGTTCCAAAAGAAGAAGGACGGAAGTCTGCGGTTATGTATTGACTACCGAGCCCTCAACAAGCTCACGGTCCGCAACAAATATCCGTTACCCATCATCACCGACCTGTTTGATCGTCTCCATGGGGCAAAGTATTTCTCGAAATTAGATCTCAGGTCGGAATACTACCAAGTGCGCATCGCCGAGGGAGATGAACCCAAGACGACGTGTGTCACAAGGTACGGGGCCTTCGAGTTCTTAGTCATGCCATTCGGTCTGACGAATGCTCCGGCTACCTTTTGCACAGTAATGAACCAAGTGTTTCACGAGTATCTCGACAAATTTGTGGTGGTTTATCTCGATGACATAGTGGTCTACAGCCCGACCATGGAAGAACATCAACTTCACTTGCAGTAGTTTTTGAGAAATTGAAGAAGAACCAACTGTACGTGAAGAGAGAGAAATGCTCCTTTGCACAACAACGTATTAATTTCCTCGGGCACGTGATCGAAGCCGGTCGGATTGGTATGGAAGAAGGAAAAGTGGCAGCTATAAGAGATTGGGAAGTCCCCAAGACAGTGACTGATCTACGCTCCTTCCTAGGGCTAGCCAACTACTATCGACGATTTGTGGAAGGCTTCTCGAATCGTGCTAGCCCCCTGACAGAGTTGCTAAAGAAAGACAAGACATGGAGTTGGACTCCAGAATGTCAAGCTGCATTCGACAGCTTGAAGCGCGCCATGATGGAAGGTCCGGTACTCGGAATTGCCGACGTTACCAAACCTTTCGAAGTCGAGACTGATGCGTCAGACTACGCGTTGGGCGGTGTTCTACTCCAGGACGGACACCCCATCGCGTACGAAAGTCGGAAGCTGAATGATGCGGAAAAGAGGTACGCGGCCTCAGAGAAAGAGATGTTGGCAGTGGTTCACTACTTGAGAGCTTGGAGGCAGTATCTCCTCGGGGCCAAGTTCGTAGTCAAGACTGACAACAGCTCTATTTGCCACTTCTTCAATCAGCCGAAATTGTCCTCCAAGCAAGCGAGATGGCAAGAATGTCTCACAGAATTTGACTTTCAATTCGAACATAAGCCCGAGCGGGCTAACCAAGCTGCAGATGCCCTCAGTCGAAAGAGCACGCATGCGGCCTTGTGCATGCTAGCTCACTTACAAGCAAGTCGATTGAGGGGATCGATCCGAGACACTGTCAGAGAACATTTAAAGAAAGACACGGCCGCGCAAGCCATAGTGAAGTTGGCCGAAGAAGGAAAGACCCGTCAGTTTTGGGTCGAAGACGGTTTACTCCTCACCAAGGGTAACCGCTTATATGTCCCTCGCTCTGGGAACCTCAGGAAACTCTTAATGGAAGAATGCCATGACACCCCGTGGGCCGGCCACTCTGGGTGGCAACTAACTTATGCTCTCGTCAAGCAGGGGTACTTCTGGCCGAACCTTCGAGACGATGTTATGTTGTTTACCAAGACCTGCCTTGTGTGCCAACAGGACAAGGTGGAACGAGCTAAGATAGCAGGATTGCTGGAACCTCTGCCTATTCCCTCCAGACCATGGGAGAGTGTATCCCTTGATTTCATCACTTATCTCCCCAAGATCGGAGAATTCGAATCAATCCTCGTGGTTGTTGACCGATTTTTGAAGTACGCCACGTCCATTCCGACTCCGAAGATGTGTTCAGCCGAGATGACGGCACAGTTGTTCTTCAAGAACGTTGTCAAGTTATGGGGCGTGCCTGAGAGTATAATCAACGATCGAGATGCTCGATTCACTGGAACATTCTAGACGGAATTATTTAGATTACTGGGTTCTCATCTGAATATTTCCTCCAGCTACCACCCACAGACAGATGGCCAGACGGAGCGATTCAACAGTATGCTCGAAGAGTATTTGCGTCATTTTATTGATGTCCGACAGAAGAATTGGGTCGAGATGCTTGATGTTGCTCAGTTCAGTTTCAATTGCCAAAAGAGTTCGACAACAGGTAAAACACCCTTCGAGTTAGTATGCAGAAGACAGCCGCTGATGCCACACGTAATTGACCATCCTCATGCGGGAAAGAGTCCCCAAGCCTACAACTTCACCAAGGAGTGGAGACAAACGTCGGAAATAGCTCGTGAGTACTTAAAGAAGGCGTCGAAGCGTTTGAAGAAATGGGTCGATCAGAAACGACGACCAATGGAATTCCAAGCGGGAGATAAAGTTCTGATCAAGCTGAGACCAGAAAAAATCCGGTTCAGAGGGAAGAAAGACCAGCGACTTGTGCGGAAATATGAAGGCCCTGTCGAAGTAATCCAGAAGGTCGGCAAGACATCTTATAGGGTTCAGTTACCCTCGTGGATGAAGATTCATCCTGTCATCCACGTTAGTAACTTGAAGCCCTATCATCCAGACCTAGAAGACTCCGAGCGCAACGAAGTGACACGGCCCTCGATCACCATGCAGAACCTGAATGAGAAAGAAGTTGAAGAGATTTTGGCAGATAGAGTTCGTCGAACAGGTAAACCTTGCCAAGACGTTCAAGAGTTTCTTGTGAAGTGGAAAGGACTCCCAGATGCTGAGATTAGTTGGGAGCGCGTCGAAGACCTGAAGTCGACTGCTATCAAGATTGTAGAGTTCGAGCAGCGTCGGTTGACAGGGACGTCAACCATTTAAGTGGGGGAGAGTGTCACGGTCATGCTTGTCCAGGGCGTGTTGCCCATGGCCGCATGCCCATGTCAACCCATTCCCCTCATGCTTTCATTATATGTATTTCCTTTGTATGGCTTGTTTATTTTCCCTTGCATTTTTCTAGTGTATGACTCCTCGTGATTTTCATGTTCAAGCCTGCCAAGGCTAAAATGCTTAATAATATACTATAGGGGGGTACGACTAGTTGTCAAACCTTCCTACCCGAGAGTTGTTCGCTATCAAGCTGTTGTTGTCCCTTTGCTTACTTGGTAGTCCGCACAACTAATATTCTTACAAAATGTTTTCAAACGTTTTCCAAAAGCTTTTTCTCTAACCCCGTTTTCTAAAACCATATTCCAAGAACGGGGGTGGAGGTTGCGAGATAGGCCCTTTGTGCCACCGGCGATCCGAAATCGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCGCTTACGAGTTCGAAAAGAGTGCGATTGTGACACTGCGCATGGCGCGTAATTCATGTGCTGGGTGTGAGTGTGTTACATGACGCGGAAATCATGTTTTGGTGCGGAGCGTGACGCGAAAATCACGTGTTAAGTTGCGTTGCATGGCGCGAAATTCATGTGTATTGGTGCGTGGCATGACGCGTAAATCATGTGCTAAGAAAGCAAGCATGGAGTGGAAACCATGTGGGGTTGCATAGCATGTTGTGTGTATGCATGAGTCTCGTTGTTGAGTTTCCGTTTTAAAAAACATGGTTATGTGTTTATTGCTTAAGAGTATGTTGGATGCGTGTGCCTAACATGTTGATTTTGTTGTTTGATGCTTGATGGCTCACCGGGTGTGAGCTGCTTACCAGTATCGTGGTTGTACTGACCCCCTCCCCTTTCTCCCCCCAAACAATTTTAGATGATGCAGGTGAGTTTGCATACGATGAGCCCGGTGGTGCTGAGGAGGTGCACGAGGAGTGACTCCACTGGTTTAGGCATCTTTGTTTCAAGCTTTTGATTATCTAGTTTGTCATAGAAAGTTATTTTATTCTTTTGGTTGTAAAGAATGGTGTTTATGTTTAATTCAGTTATAGGCTTGTCTAGTTGTTTTAAATTGAGAAGTTAGCCCTAGCTATGGTTAGCTTCATTTGAGTTTTGTTTCCTTCCTGTTAATAACATTAAGTTGTTTCTAATAATTTAGTTGAATGTCTTTATCTAGCATGAATCTTTTTAACGTTGGTTGTGAATGCGAGATCTGACTCGCTAGTTTGAGAAAGTGGTTTCTGGTGGTTATCTGTGGCATTGTGGTGTGTAGTTGTGGGTTGGTTGACTTATAGAAATGTCTTTTTGCTTAACAGGTGATATAAAAATTTTGGTTTAGTCCTATATATGTCGTTATGCTGCCGAAATTTTCGGTGCATTCGGTTAAGTTTGGTTTAGGAGTTAGTAATGTCGCTAGGATTAGTTTTAAAATCCTGGGGCGTTACAGATGGTATCAGAGCAGAACCTCTCCCAGTAGGATGTGGTTCGGGGACGAACCAAGGCAGAAGTTGGTGGGCATGTGATGCCCGAGGTTAGGAGGGGTACATGAATGAACCGAGATCACATCCGAATGAGAGGGATCCTGAGGACATGAAAGTATGGTCTAGATAAGCATAAAACAATTGATAGATACTATCTATACCAACAAGGTGCACTTTCCTTTTCGGTGGCTCAATCATAGGAACTTTGAAGTTAAGCGTGCTTCGCTTGGAGAAGTTTTATGTTGGGTGACCTCCTAGGAATTTTCCTAGGAAGCATGTGAGTGAGGACAAAGCATGCTAAAAGAACCCCGTGTTGGTTTGTGGGGACAGTCTTCACTCTTAGAAGCAGTTTCAAACAAGTATGGTGACGTCGCCAAGTCGCAGGGGAATGCCGGGGTCGTTAGGTGCCGAATCTGGATTTCGAATCCTGGGCCTAGGGCATTACAACAATCCTTATTCTACTTTTGTCAATGGTCGTATTATTAAGATGTAAATTAGACAATATATACTATAATCTCTTTCTAAAATTAATTGTTGATATTCTTTCAATATTAGCAATTGATGTTAATACAATTTGAATGCAAAACTTGTCACTAAATTTTAGGTTAAAAAAGATGCTTTGATTAACATACAATATATCGATGTTGCTCAACTCATAGAAATTTCATATCACAATAAGGGAATTCAAAAGATAAGACATTGAAAGTCATAAAATTGTATACAAGAAAAATCAACCACTAATATGGTACTTGTTGAATAAAATTTTTGGATGTCTAAGTAGATTAAAGCTTGACCCATTGAAAAAACTATGTATATGAGAGATTATCTCATACCTTAACAATGAATTGTTGACTCCTTTAATTAAATGACATGAATAATTAATAACTTGCAAAAAGCAAGTTATTTGTCCTTTAAACTTAAGCTAAAACAAGGCCAAAAGAAACAATGATGCGTTGCTTCGACGCAATAAGAAAGGAAAATGTGATATTTTTATGCGGAAGGCTATATTCATGTATGTGGTGAGAAATTATAAAAATATAGGGCGCTAACGCAGCTAATTCAGTTGTTTTCCAAAGTTTCTTCTCAACGCAGGCACACATCGCAAGACGATCAAGAGACAGACAAGATGGATGAAAGGACAATGCTGACATAACTAGTGCAAGTGGGTTGAAAAAGGGCTGAAAAGTTGCAAGTTTGCTGATGATGACTGAAGCAAGTTGCTAATTACTTGGAGAAGTTGATTTCCCTCCCCTATAAATAGAGACCACCTGCCCAAGAAAGGAAGAACTCATAACTTAGAATTCACAAGAATTGAGGGACGAGAGGAGAGGACGAAGATCAAGGAGAAAGAGAAATCACAGAGAACTGTGATTTAGAGTAGACTTGCGTTGGCAATGTATTATTGCATGATGTATTGTTTTGCTCACATGAACTAATTTTCTTCTTCAAGGCTTAGCGCAAGCACCTCATGCAGTGATAAGTATATTTTATAAGCGCACATTTTGATTTAATGAAACATTAATTGCCTTCTACTTAGTCGCGATACTATTTTCATTACTAACTCCCGCTTGGCCAGCCGGATGCGGTAGCAGTATGCTAAATTCCTGACAGGTAATGCATGCAGATATCTCTAAGTGGAACAAGTTAGCGCATGACATGTAGTCTTGGTAGCATGAAAATACTACCGCTAAAAGATAGTGCATGCATGAGCTTTGATTGCGTTAAGACTAACGCAATCCCTTGTAAGTTTTAGAGAACTAAGCCACACGCATGAACTAGCCAAATAACCAATTGATAGTTTTATGCCAAACGCAGAAGGAGTACCGGAAGGGAAACTTATGATTTTTTCTCACTTAGGCATTAATGGATCAATTAACCAAAGTATGCGCCACAAGGTTCTTATAAACGCATGAGGTTGCAACCGCAACAGCCTTGATAATATTCTCCTTAATACTTTTCCTTTCACTCCTGTCGCATGTTTTGCTTTCTGCAAGTTTTATTTTTCAAGCTTACCAACTCTCTTATTTATTCTTTTATATAATATCACAAGTTTTCGAGTTTAGATCAGTAAATATTGTTAAAACTTTGCCATTAACCTTTCCCTATGGATTCGACCTTGGACTCACCAGGTATTACTTGATTTTGTCAATTTATACTTGGATTGATTATTATCTACGACTATTTTTTATTAACTTTTTGAACATACTAACGAACCATCAATAATAAAGGACACCTTGATTCTAGTTATAGTACCAGTTATGAAAATACTTATCTTAACGACACCTATTATATTTATCCCTTAGAAACTAAGAGTGGATAGTGATTTTTTATTAATTTACTTTCATACACATTTTCTTTTTTACTTTTTGTTGGAAAACAAAGCTATCTCATAGATGGGGGCAAGAATTTGGTGTATTTATGTAAAATTTCTATCAGATATGTTCAAGTGTCTTACCAATTTTGTAAAGGGATTTTGATTTTATCCCACATCGAAATATACAAGAAAGAAGTCACTCTATAAAGCACCACAAGATTTGTTTTCAGAAATTATGTCAGATGGCCATCTTCCAACCCTATTTATCAAAAATGTCCAAACTATGAATATTTTACTGTTTTAGAAATTACAAGATGTTTGTGACAATTTTACCCATGTTGGCTTCATCTCTCCTCAATAATTTCTGAACATATTCTCTCTCTCTATCAATAATTTTTTAACATATTCTCTCTCTCCATCAATAATTTCTGAACATATTCTCTCTCTTCCATCAATAATAATTATTGTGTTTAATTTTCGAATATTTATACGTTTTTTTTTTTGTTTTTCAAATTTGTAATCCGAATTTCTTCCATTGTTTTTTTTTTCATTTCACTAAAACCTATTATTCTATAACAAAATCCAATGGCTGAATATTTTCTCTCTCTCCCATCAATAATATCTCCCCGCGTAGTGCTGATTTGTAGGAAATTAGTCAAACATTAATGAATATCTTTTATTTTTTCCTTTTTTTCGTTTTTGTGAAATTATGTAATCCCATCTTTGTTGTTTTGTATTCCATCCTATTATCTTTTTTTTTCCAGCGGCAAGCATCTTCGGTAATTTTTCTCTTCTTCCTTATCGCCCAAAATTGGTTCAGTTGCAAGTTCATTATCTTCATCTTCTACTTCGGCAGCAAGTTCATCATTCTTAGTCTTCATTATCGCCCGAAACTAGTTCAATTGCATTTGTGTGTTAACGTCATCTCCATTTTTTCAGTATATTACAGATGTAGTCGATGTTATCTTGATGTTATTCTTTATATATATGTTTGTCTTCTCTATAAGTTTATCATTAATGTGTCATATATATCGAATGTTATACGTGCATGTTCTTCTAAATATGTCATACATCACGTAGTATATATATATGTTGATCTGATTATAGTTGTATCACCCAATATGTTCATATATATCCGATGTTATACTTGCATGTTCTTAAAATATGTCATACATCACGTAGTATATATATGTTAATTTGATTAAAGTTGTATCACCAGTATGTTCATATATATGAGATGTTATGTGACGCCCCGTGTCTTTCGGTGTATTTAAATTCCATGAATATAGTCGAAGAGAATATAATTTCTATTTTGGCTAGTACTTAGGGATTTAAATTTTAATACCAAGGCATTGGGAAATTATTTTGGGATATGAACGTTATATTAGTAATTATTTCTCTTCCTCAAGCTTGATTAAATTTGGCTAGCGTTATTATCAGGTCTCTTTAGCATTGAAATATTCACGCTGAGTGGTGAGGAAGTTACCTATTATTGGGCTTCTATTTTGGGTTTTCTTAATTAAAGAGATTAAAGAAAAGAGAAAAGGAAATAGAAAGAAAAAAAAGCCCTAGCCACTATTCATCTTTTTCTTCCTTTCCTTCTCAAGCTTGCGTGAAGACCCCCCCTTGCCGTTTCTCAGCCGCCGCCCAGCCGTGAAGGTCGACCCAGCCCCCGTAGTCTCTTCAGTCGCCGTTGCCACGCCGCCGCCGCTGTCGTCGCGTTGCCCAACCATTCGCGGGTCTCTCCCTCTCTCCGCGTGAGTTTCCCTCTCTCTCACGGTTCCTCCTTCCTACCGTGAAGCCAACCGCCGCCATCTGTCGCAGCTCGAGCAGCCGCCTCCCCTCTCCGGTCAGTTCTTGCTGAAAATCAAAACCCACACGAGGATTTGTGCGATTCAGCTTTCGTGTGGCAATAAACTCGTGGGTAAGTCTTTTTCCGTTGTTCTTGGTTGTTTTAAGCCCGATCTAAGTGTTCCTTTGTTCGATTCGTTAGATCTCGCGTCCTAGCAGCTCGAAGCTTCAGTTCCTTGCGTTTTCGCCTCTGTCCAACAGCTGTTTCGGGCGTTTTCAAGGTCGTTTGGCATTTTTGGTAAGTCTAATCCCTTACCCATGCACCTTTAGACCTTTTATTCTAGTTTGAGCAAATGCCTAATCGTTATGGACTCCGTATTTCAAGATTTAAGTCTGATTAGCTGCTGTCCAGTGTCGTCTTGCTTAGTTCGTGAGTGTTTCGGCATCAATTAGCGTTTCCGATAAGTTTAGCTCTTACCCATTCTTATTTAGAGCTCATAGTAGAATGCCCATTCGTTTTAGGTGCTGAAAAGTTAAGTTTGTGTTGATTTTCTGATCTACAGTGCCATCTAAGTGTTCGATACACTTCAACTCGAATACCCACTACCCAAGGATCCTTCTAGCGCGTTGTTAGAGGTTAGAATAACCCGCCTAGCGTGGAAGCGGGTCCATTTGGGTAAGTTTCTTCACTGTCCCTAGCTTGTTAGTCTTAGGTTGGGTTGCCCATTAGTTATCCTAGCTTTAGGAGCATGTTTTATCGTTACTCATTAGTTATCTAGACTCTTAAGGTATTGCCTAATCTTTATAGGACCTAGTTTATGCATTTAAATGGTTCATCGTGTCTATTTTGGGTAAAAAGCATGTAGTTTATCAATGCCCGTTTAGTCTCGTTGCCTTTGTAGTTTTGCCCAACCTTTGTAGGTTCTTAAAGCATGAATTTATGAGCTTTTGGTTGCTGTCCATAGTTTAAAAGGCTTGCTAAATAGGTTTCCTATGATTACCTAGGCCTTATTTGCATTGCCTAAGCTTTAGGAGCTCTTAGCATGTCGTTCATGCATTTTAGGTGGTTGTTACTTGTCGTCCAGTGGCTGTATAGCCTTAATATCGTCAACTAACAAATACCCACTGCCCGTAACGATTTAAACATGGTTGCCCATGGATTTATGGCGTTGGGTTTGCAATTTGGGTTATGTTTAGATGTTGTCCAGCAAGGAAATAAACTGTTATTGGTTCAGTTTCGCCTTTAGCATCTTGTTTTAGGGCGCTTTCCGTTAGTATAGACTTCCTTTAATGGTTGGTAGTTTATTTGTAGCTGGAAGCTCGTTTTGGAGCGTGATTGTGCAGTCCCAGCTAGCGTTGGTTTTTAAAAGTGATTTTGTAAGTAGTTTTTACTTACTAAGCTTGTTTGACTGCATGTAGCATGATCGTTTGTTTATTTGCTTTTCTTATATTTGTGCTATGTATGAAATGACAAATATGTGAATTGTTGCGCTGTGTCCTTTAAAGTGCTTGTGTAAAGCATGAATTGTACCTTCTGTGTTGCTTGAGTTGTATACGCTTAAGGTGTTTAAGCATGATGAATGTTGTCTTGAGCATGGTGAATGTTGAGTTTAGCTTTTGAGTCTGGCTTCCATGTTGCATGGGGGATGTGTAGCATGAGTCGGGTGTGAGGCACAACATATGGTGCGTAATTAATGTGTAGCGGAGCATGACGCGGAAATCACGTGGGTGTGAGTGTGGAGCATGACGCGAAAATCACGTAAAAGTGGCGCAACACATGGCGCGGAATTCATGTGGGGTAGGTGTGGAGCATGACACGAAAATCATGTAATTAGTGCAGCACATGGCGCGGAATTCATGTGTAGCGGAGCATGACGCGGAAATCATGTAAGTAGCGCAGCACATGGCGCGGAATTCATGTGTAGTAGAGCATGACGCGGAAATCATGTAATTAGCGGAGCATGACGCGAAAATCATGTATTAGCGGAGCATGACGCGGAAATCATGTAGTTGCGGAGCATGATGCGGAAATCATGTGGAGTCTAGTGCGTGCGTATCATAGCGTGAGATGCATTTGCATGAGTTTGATGTTTTTAAGCATGTGGTTAGTTTATAGCTTAAAAGCATGTTTCTTGTTGTGGTTGTGTAACCTGTTGGATGCGTGTGCTAAGCATGTTGATTGTTTTGATTGTGTTTGTGGCTTGGTAAGTGTGAGCTGCTTACCAGTACCACGGTTGTAGTGATACACCCTTCCCTATCTTCCCCCCAACATTTCAGATGTTGCAAGTTTGGATGACGAGCTGGACGTTAGTGAGGAAGAGGAGAACTTCGAGGAGGAACCCTAA

mRNA sequence

ATGGGCAAGACCCATGTTGAACGACTTGTAGAAATCGAAGAGCAGCTGCTCTACTTGAGAGAGGTCCCAGATTCAGTTCGGTTCTTGGAATCTCGCCTGGAAGAGATTGCGACCAAGACGGACAAAATTGATGCAGTATCTGGCCGCCTGGATGGAATGCCCATCAAAGAGTTATTAATGAGGGTTGAGAACCTCGAAGAAAAAGGCCCTTTGTGCCACCGGCGATCCGAAATCGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCGCTTACGAGTTCGAAAAGAGTGCGATTGTGACACTGCGCATGGCGCTTGTGGGTTGGTTGACTTATAGAAATGTCTTTTTGCTTAACAGCTTGCGTGAAGACCCCCCCTTGCCGTTTCTCAGCCGCCGCCCAGCCGTGAAGGTCGACCCAGCCCCCGTAGTCTCTTCAGTCGCCGTTGCCACGCCGCCGCCGCTGTCGTCGCGTTGCCCAACCATTCGCGGGTCTCTCCCTCTCTCCGCATCTCGCGTCCTAGCAGCTCGAAGCTTCAGTTCCTTGCGTTTTCGCCTCTGTCCAACAGCTGTTTCGGGCGTTTTCAAGGTCGTTTGGCATTTTTGCTGGAAGCTCGTTTTGGAGCGTGATTGTGCAGTCCCAGCTAGCGTTGATGTTGCAAGTTTGGATGACGAGCTGGACGTTAGTGAGGAAGAGGAGAACTTCGAGGAGGAACCCTAA

Coding sequence (CDS)

ATGGGCAAGACCCATGTTGAACGACTTGTAGAAATCGAAGAGCAGCTGCTCTACTTGAGAGAGGTCCCAGATTCAGTTCGGTTCTTGGAATCTCGCCTGGAAGAGATTGCGACCAAGACGGACAAAATTGATGCAGTATCTGGCCGCCTGGATGGAATGCCCATCAAAGAGTTATTAATGAGGGTTGAGAACCTCGAAGAAAAAGGCCCTTTGTGCCACCGGCGATCCGAAATCGAGTTGGCTGACTTACTCGTGGGCGAGAGTAAGTGCCGCACAATCGCTTACGAGTTCGAAAAGAGTGCGATTGTGACACTGCGCATGGCGCTTGTGGGTTGGTTGACTTATAGAAATGTCTTTTTGCTTAACAGCTTGCGTGAAGACCCCCCCTTGCCGTTTCTCAGCCGCCGCCCAGCCGTGAAGGTCGACCCAGCCCCCGTAGTCTCTTCAGTCGCCGTTGCCACGCCGCCGCCGCTGTCGTCGCGTTGCCCAACCATTCGCGGGTCTCTCCCTCTCTCCGCATCTCGCGTCCTAGCAGCTCGAAGCTTCAGTTCCTTGCGTTTTCGCCTCTGTCCAACAGCTGTTTCGGGCGTTTTCAAGGTCGTTTGGCATTTTTGCTGGAAGCTCGTTTTGGAGCGTGATTGTGCAGTCCCAGCTAGCGTTGATGTTGCAAGTTTGGATGACGAGCTGGACGTTAGTGAGGAAGAGGAGAACTTCGAGGAGGAACCCTAA

Protein sequence

MGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMRVENLEEKGPLCHRRSEIELADLLVGESKCRTIAYEFEKSAIVTLRMALVGWLTYRNVFLLNSLREDPPLPFLSRRPAVKVDPAPVVSSVAVATPPPLSSRCPTIRGSLPLSASRVLAARSFSSLRFRLCPTAVSGVFKVVWHFCWKLVLERDCAVPASVDVASLDDELDVSEEEENFEEEP
Homology
[Close]
BLAST of Spg026692.1 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-16
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 1   MGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLM 60
           +GK+H++RLVEIEE+LL+LRE+PD++R++ESRL+EI+TK D ID V+ R+DG+ I+EL++
Sbjct: 7   LGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIRELML 66

Query: 61  RVENLEEKGPLCHRRSEIELADLLVGESKCRTIAYEFEK 100
           RVE LE+K     R   +E      GES   +IA+  E+
Sbjct: 67  RVETLEDK---VKRTDNLER-----GESSSSSIAHMEER 97

[Close]
BLAST of Spg026692.1 vs. NCBI nr
Match: KAA0066842.1 (uncharacterized protein E6C27_scaffold271G002070 [Cucumis melo var. makuwa] >TYK27990.1 uncharacterized protein E5676_scaffold384G002010 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-15
Identity = 45/66 (68.18%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 2  GKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMR 61
          GK   +RLVE+EEQ+LYL EVPDS+R+LESRL+EI+TKT+ IDAV+GR++G+PI+ELL R
Sbjct: 8  GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISTKTNMIDAVAGRVEGLPIQELLAR 67

Query: 62 VENLEE 68
          V+ LEE
Sbjct: 68 VDTLEE 73

[Close]
BLAST of Spg026692.1 vs. NCBI nr
Match: TYK18977.1 (uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-15
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 2  GKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMR 61
          GK   +RLVE+EEQ+LYL +VPDS+RFLESRLEEIA KTD IDAV+GR++G+PI+ELL R
Sbjct: 8  GKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLAR 67

Query: 62 VENLE 67
          V+ LE
Sbjct: 68 VDTLE 72

[Close]
BLAST of Spg026692.1 vs. NCBI nr
Match: KAA0046219.1 (uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-15
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 2  GKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMR 61
          GK   +RLVE+EEQ+LYL +VPDS+RFLESRLEEIA KTD IDAV+GR++G+PI+ELL R
Sbjct: 8  GKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLAR 67

Query: 62 VENLE 67
          V+ LE
Sbjct: 68 VDTLE 72

[Close]
BLAST of Spg026692.1 vs. NCBI nr
Match: KAA0067252.1 (uncharacterized protein E6C27_scaffold418G00690 [Cucumis melo var. makuwa] >TYK10861.1 uncharacterized protein E5676_scaffold231G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-15
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 2  GKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMR 61
          GK   +RLVEIEEQ+LYL EVPDS+R+LESRL+EI+ KTD IDAV+GR++G+PI+ELL R
Sbjct: 8  GKAQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKTDMIDAVAGRVEGLPIQELLAR 67

Query: 62 VENLEE 68
          V+ LEE
Sbjct: 68 VDALEE 73

[Close]
BLAST of Spg026692.1 vs. ExPASy TrEMBL
Match: A0A6J1DLQ6 (uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022320 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-17
Identity = 50/99 (50.51%), Postives = 74/99 (74.75%), Query Frame = 0 

Query: 1   MGKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLM 60
           +GK+H++RLVEIEE+LL+LRE+PD++R++ESRL+EI+TK D ID V+ R+DG+ I+EL++
Sbjct: 7   LGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLAIRELML 66

Query: 61  RVENLEEKGPLCHRRSEIELADLLVGESKCRTIAYEFEK 100
           RVE LE+K     R   +E      GES   +IA+  E+
Sbjct: 67  RVETLEDK---VKRTDNLER-----GESSSSSIAHMEER 97

[Close]
BLAST of Spg026692.1 vs. ExPASy TrEMBL
Match: A0A5D3DXL5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002010 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.2e-16
Identity = 45/66 (68.18%), Postives = 59/66 (89.39%), Query Frame = 0 

Query: 2  GKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMR 61
          GK   +RLVE+EEQ+LYL EVPDS+R+LESRL+EI+TKT+ IDAV+GR++G+PI+ELL R
Sbjct: 8  GKAQKDRLVELEEQMLYLVEVPDSIRYLESRLDEISTKTNMIDAVAGRVEGLPIQELLAR 67

Query: 62 VENLEE 68
          V+ LEE
Sbjct: 68 VDTLEE 73

[Close]
BLAST of Spg026692.1 vs. ExPASy TrEMBL
Match: A0A5A7VFV0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00330 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-16
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0 

Query: 2  GKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMR 61
          GK   +RLVEIEEQ+LYL EVPDS+R+LESRL+EI+ KTD IDAV+GR++G+PI+ELL R
Sbjct: 8  GKAQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKTDMIDAVAGRVEGLPIQELLAR 67

Query: 62 VENLEE 68
          V+ LEE
Sbjct: 68 VDALEE 73

[Close]
BLAST of Spg026692.1 vs. ExPASy TrEMBL
Match: A0A5D3D5Z0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00720 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-16
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 2  GKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMR 61
          GK   +RLVE+EEQ+LYL +VPDS+RFLESRLEEIA KTD IDAV+GR++G+PI+ELL R
Sbjct: 8  GKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLAR 67

Query: 62 VENLE 67
          V+ LE
Sbjct: 68 VDTLE 72

[Close]
BLAST of Spg026692.1 vs. ExPASy TrEMBL
Match: A0A5A7TY91 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold284G00070 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.4e-16
Identity = 46/65 (70.77%), Postives = 57/65 (87.69%), Query Frame = 0 

Query: 2  GKTHVERLVEIEEQLLYLREVPDSVRFLESRLEEIATKTDKIDAVSGRLDGMPIKELLMR 61
          GK   +RLVE+EEQ+LYL +VPDS+RFLESRLEEIA KTD IDAV+GR++G+PI+ELL R
Sbjct: 8  GKAQRDRLVELEEQMLYLVKVPDSIRFLESRLEEIAEKTDMIDAVAGRVEGLPIQELLAR 67

Query: 62 VENLE 67
          V+ LE
Sbjct: 68 VDTLE 72

The following BLAST results are available for this feature:
BLAST of Spg026692.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155185.11.7e-1650.51uncharacterized protein LOC111022320 [Momordica charantia][more]
KAA0066842.11.5e-1568.18uncharacterized protein E6C27_scaffold271G002070 [Cucumis melo var. makuwa] >TYK... [more]
TYK18977.11.9e-1570.77uncharacterized protein E5676_scaffold418G00720 [Cucumis melo var. makuwa][more]
KAA0046219.11.9e-1570.77uncharacterized protein E6C27_scaffold284G00070 [Cucumis melo var. makuwa][more]
KAA0067252.11.9e-1569.70uncharacterized protein E6C27_scaffold418G00690 [Cucumis melo var. makuwa] >TYK1... [more]
BLAST of Spg026692.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg026692.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DLQ68.5e-1750.51uncharacterized protein LOC111022320 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5D3DXL57.2e-1668.18Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VFV09.4e-1669.70Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5D3D5Z09.4e-1670.77Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TY919.4e-1670.77Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Spg026692.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg026692Spg026692gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg026692.1-cdsSpg026692.1-cds-scaffold6:19818376..19818580CDS
Spg026692.1-cdsSpg026692.1-cds-scaffold6:19822630..19822749CDS
Spg026692.1-cdsSpg026692.1-cds-scaffold6:19823543..19823585CDS
Spg026692.1-cdsSpg026692.1-cds-scaffold6:19827672..19827821CDS
Spg026692.1-cdsSpg026692.1-cds-scaffold6:19828058..19828153CDS
Spg026692.1-cdsSpg026692.1-cds-scaffold6:19829168..19829214CDS
Spg026692.1-cdsSpg026692.1-cds-scaffold6:19830133..19830200CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg026692.1Spg026692.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0008270 zinc ion binding