Spg026648.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg026648.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold6: 18013399 .. 18016947 (-)
Sequence length273
RNA-Seq ExpressionSpg026648.1
SyntenySpg026648.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTGTGGGTCTTTAGTGGAATGACCCACAGTTAATGAATATTGGTTAACCTGATTAATGAGTTTAATCGGTTAACCTCATATCATTGAAGCTTCTGATCTGTAGGTCCATTAGGTCCCCCTGCTAGCTCGTAAAGAGTAATTAGGAACAATTATATCTTGAGAGAATTTGAATAGTTCAAATTCATATTGGGAATTAAGTTAATTGTATGAGATACAAATTAATATAATGTATAATGATACATTAAAATATAAAGTCTAATTTGAAATTAAACTTTATTATTATGAGAGAAATAAATATTTGAAGAAGTTCAAATATCAATATGAATTTGATTCATATTAAATTTATAGGATATAAGAGAATTGGAAGGAGTTCCAATTTTAATATGAATTTGATTCATATTATAGAATTAATTAATTGAAGGCCTGAATATTTAATTGGGTAATTAATTAATTAAGGGAAAAATACACTTTTAGTCCCTGAGGTTTGAGTTAGGTTTCATTTTGATCCCTGAGTTTTCAAACTCAACAATTTAGTCCCTAAGGTTTGGTTTTAGTTTCATTTTGGTCCCTCCATCCAATTTTCCGTTAATACTTAACGGATTGCTGACGTGGCAAAATTTTTTTATTAAAAAAATTATTTTTTAAGTTTTTTAAAATATAAATATAACAAAATAATAAAAATATTATTATTTTATAATTCTTTTTTTATTTCTTTCCCAATTCCTTCCTCTCTCTCCTTCTTCTTTCTTCCCCCAACCCCTTCTCCTTCTTCAAGCTTTCTCCGGCGACTGTCAACACCGGCGGCGGCCGGCCGCCGCCGACGTTTTTTTTTTTTTCTTTCTTCTCTTCTCAACTCCATTCTCTTTTCTTTTTTATTTTTTTCCCCACTTTTCTTCTTTCTTCTCCATTCCCTTCATTTTCTTCTTTTCTTTGATCGAAGGCATGAAACCCTTGGATTCCAGCTTGAACGAAACCCACATCCCGCCGCTGCTTCACTCCGTGCGTTTCAGATCTCTCTCTCCCTTCTTTCCAGTTATCGCGCGTTACAGATCTAGAACGAAATCCAGATCTGAAATGAAGAGGATTTTCCCTTCGTTTTAGAAGCGGCGGGTCGTGGCTGGAAACGAGCGATTTCATGGAGGTCGTTCCCTTTCGATTCCAGATCTGGCGGCGGGTCGTGGCTGGAAACGCGCGACTGGTTTCATGGAGGTCGTCGACGACTGGTAAACGTGCAGAGACTGGTGTGGGTTTTCGGGTTAAGCTGTCGTTGGTGTGGGTTTTCGAGTTTAGCTGCCGTGGGTCTCGGTATTTGAGGGGTTGAATCGTCGTTTTCTTTTGGGTCTCGGTTCAGAGACTGGTGTTCTCACCGGAGAGTTGCCGTGGGTACAGATTCGCGAGGCTGGTAGCGCCAGAGCATGCGTGGGTCTCGGTTTTGAGTGGGTGATTCGGGTGTGGTTGATTTGTGTCTCGTTTCTTTCTCCCTTCTTGGTTCTCCTTCCTCCTCGATATTCCGGCGAATGGAAACCAGGTTTAAAAAAAAAAAAAAAGTCGTCGGAAGCCGCCGCCGCCGCCGATGTTGACAGTCGCCGGAGAAAGCTTGAAGAAGGAGAAGGGGTTGGGGGAAGAAAGAAGAAGGAGAGAGAGGAAGGAATTGGGAAAGAAATAAAAAAAGAATTATAAAATAATAATATTTTTATTATTTTGTTATATTTATATTTTAAAAAACTTAAAAAATAATTTTTTTAATAAAAAAATTTTGCCACGTCAGCAATCCGTTAAGTATTAACGGAAAATTGGATGGAGGGACCAAAATGAAACTAAAACCAAACCTCAGGGACTAAATTGTTGAGTTTGAAAACTCAGGGACCAAAATGAAACCAAACCCAAACCTCAGGGACTAAAAGTGTATTTTTCCCATTAATTAACTAATAGAATGTCTGAAATTAAATATATGATATTTAATTGGTGATTAATTAATTTAAAGAATTAATTAATTGGAAATTAATCAATTATGAAAATGATTAATTACTTATGGAAGTAATTAATGATTTATGGAAATGATTTAATCACTTATGGAAGTGATCAATCATTTATGGAAAAGATTAATCAATTGTGGAATTGATTGGTTATGGAATTGATTAATTATGGAAAAGAAAATCAATTATGGAAATAATTGATTTTAAATGAATATTTTATTCATGGCCTTTCTCCTATAAATAGAACACTAACCCTAGGGTTTATGGGATACAACATATGGCCACCATAAGACCCTCTCATATTCTCTCAACTCAATAACTCTAGGGAGAATTTTCTCTCTAGAATTTTTCCCATTCAAGATTAGGTAGTCCCACAACTACGTTTCTAATCTCAGAGTTATAGCGGAGAAGATCAAATGGTGGTGTTCTTCGTTGTTGCAGAGCAATCAATAATCATTATTGAAGTATTCAGAGTCGTCAACGGAGGTATGTTTTTCACCGCTTAACCTTTTGCCAATGTATTGGTATTTTGTAGAACAAAATTAATTTACGAACGGTCCAATTGCTTCCGCTGTAACGGAATTGGGAATTCCAATCCTTCACTATCATCGTTTGGAACGTCACAAGAGAAGTTCCGCTTTCATATCAGGCATGTCTTGTTCCACCTTTTTCATCACTACAATTGTCATATGTCCTCTTCCATTTATTTGCATAATCCAATTTCAAGCAATGTGTCAGAAAGCTGCATGATGAAGAAAAGTGTTTAATCATCCATTATGCAAACCATGATGTTACCTAATCATGTCTCATCACTCCAAGTGGTCTTTAATGATAAAAATGCATCCTATGCCCTCTGCATATTTGAGAAACATAAAGGAAACTAATTGCAAATACTGCTGTGTGGTAAATATAAACAGTTATTACTTTAATACCATGATTAGTTGTTGTGGAAACTAGCGTGATCCCTATTTTATCCATTTAGGTGCCTAAGGTAATCTTTTGTTTGCTTTTTTCCCACTTTAATTATATGCATGTTTGAGATACAGAAGAGCTAATTGAAAGTGACATGATAGGTTTATATAGAAGCCTACACTTGTCCATGCGTGAGATGTCACCCCTTTGATCCAGTTTTTATTGCCCAATCGAATGGAGATTATATTGCAATCTTCTCTCTAAACCCACCTTTCAAGTTAGACAAATACAAGAGGTATGAAAGTCATGGAGTCTCAGGCTTTCCAATAAAATGTAACTTCAGCTTGGATGCCAAACAGATCATCTCTGGTTCTTCAGATGGCTCTATATATTTTACGATTATGAATCATCCTTGATTATACATAAACTAAAAGCATCTGAACAGGCTTGCATAGATGTTGCCATCCACCCGATCTTGCCTAATGTAATCGCTTCGTGCAGCTGGAATGGAAATATTTCACTGTTCCAGTGATTGTTCTGATTGTTCTCAGATTCCTTTTATCGAAGTTAGGACAATGA

mRNA sequence

ATGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTATCTGGCGGCGGGTCGTGGCTGGAAACGCGCGACTGGTTTCATGGAGGTCGTCGACGACTGGTAAACGTGCAGAGACTGGTGTGGAGACTGGTGTTCTCACCGGAGAGTTGCCGTGGGTACAGATTCGCGAGGCTGGTAGCGCCAGAGCATGCGTGGGTCTCGGTTTTGAGTGGGTGATTCGGGTGTGA

Coding sequence (CDS)

ATGAACACTCGTGAAGGATTGACTTACCGGTATAGGTCTATATCCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCAGCTATCTGGCGGCGGGTCGTGGCTGGAAACGCGCGACTGGTTTCATGGAGGTCGTCGACGACTGGTAAACGTGCAGAGACTGGTGTGGAGACTGGTGTTCTCACCGGAGAGTTGCCGTGGGTACAGATTCGCGAGGCTGGTAGCGCCAGAGCATGCGTGGGTCTCGGTTTTGAGTGGGTGATTCGGGTGTGA

Protein sequence

MNTREGLTYRYRSISVDTEMFYSEKSSAIWRRVVAGNARLVSWRSSTTGKRAETGVETGVLTGELPWVQIREAGSARACVGLGFEWVIRV
Homology
The following BLAST results are available for this feature:
BLAST of Spg026648.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg026648.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg026648.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg026648.1 vs.
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg026648Spg026648gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg026648.1-three_prime_utrSpg026648.1-three_prime_utr-scaffold6:18013399..18013476three_prime_UTR
Spg026648.1-three_prime_utrSpg026648.1-three_prime_utr-scaffold6:18014237..18014353three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg026648.1-cdsSpg026648.1-cds-scaffold6:18014354..18014354CDS
Spg026648.1-cdsSpg026648.1-cds-scaffold6:18015412..18015514CDS
Spg026648.1-cdsSpg026648.1-cds-scaffold6:18015619..18015703CDS
Spg026648.1-cdsSpg026648.1-cds-scaffold6:18016864..18016947CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg026648.1Spg026648.1-proteinpolypeptide