Spg026620.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg026620.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetroelement pol polyprotein-like
Locationscaffold6: 18369473 .. 18381838 (-)
Sequence length1011
RNA-Seq ExpressionSpg026620.1
SyntenySpg026620.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTATTTCGCATTATGGATGTGCTTATCGAGATTGTAACGTATTTTATGTTTTCAATCATGAACTAATTGCTTTGTAGGCATAGGTTAAGAATTATGTAATTGTTATATTTATAAAATCTGGAAATTCTATTTGATTATGATCATCTTGAGTTATCGTTGTTCTTCAATTTCATTATGTGCCCGCCTAGCTAGCCGGTATGTATAGCTTCTCCTAGTTTCAGGGATGATTTAGGAGTTGTGTGGCGATAATTCACGTTAGACCATTATGAGTTGGTGAACGCCAGCAGTTGAACTAGGGATAGTCAATTGCCTAACGCTTGATCGATAGAGCTTCATTGGAGTTGAAACATATTCCAAAAAATCCGGAGTTCCGGGAGGATCCCGTTGATAAGACTGCATGAGATTGACAGATCAAAAGAATTGTTGGATCATCTTTATAAAAAATTACAGAAGTCTTAACCTGTGTCTGTTTCCATTCTGTTTTCTATAATCGTAATCATTTACTGCTTTCGTATTTCTTTTGTTTCAACATTTTAAAAACCCAATCAATTTAACCAACCTTTTGAAATCACTAAAAAGGAAAATTAAATCAATAGAGGTAGGAAATTTCAAGACCCTGTGGATACGATAAATACTTATCACTTGTTGCTAGATTGTGTATACTTGCACAGTATTTTGAAGTGAAATCTATCTATATTTTTAACCACTTCAGAATTGCAACAAGTTTTTGGCGTCATTGCCGGGGACTTGAAATTGTTTTATTTGATTGCTTTTTTTTTGTGCATTTTTGGTGATTTGGTGCGTGAATTTTTTGATTGTTTGTGTTTGAGCGATCCCCTTGGGATTAGATTTTTAAGAAGTTCAAGTGAATCTCGAAGAGGAATCGTGCGATGCAGCAAAATCCACCGAGAGAGCAAAATGGGCAACAAAATAATCAGGCTGAGAACCCTATTCTTGTAGCGAATGATAGGGGCAGAGCCATTCGAGCATATGCTTTCCCAATATCTGACGAGTTGAATCCAGTGATAATACGTCCAGTTATTGAGGCAACAAACTTTGAAATGAAATTGGTCATGTTTCACATGTTACAGATGATTGGCCAATTCCATGGTTTATCATCCGAGTACCCTCATTTACATCTTATGTCTTTTCTAGGAGTTAGTGACTCATTTGTTATTCAGGGAGTGTCGAGAGATGCCCTTAGATTAACCCTATTTCCTTATTCCCTTAGAGATGGAGCAAAAGCGTGGTTGAATTCTTTTGCTCCAGCGTCAATTAGTACGTGGAACGAGTTAGCGGAGAAATTTCTTAGTAAGTATTTTCCACCAATTAGAAATGCCAAGTTGAGGAGTGGGATAGTGAGATTTAGGCAAAATGAGGAAGAAACTTTTAGTGAGGCTTGGGAAAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCACTGTTTACCACATTGTATTCAAATAGAGATATTTTACAATGGGTTAAACATAGCAACCCAATGTATGGTTGATGCTTCTGCGGGAGGGGCCCTTTTGGCAAAAACTTTTAATGAAGCTTATGAGATTTTAGAGAGAATATCAACCTACAGTTGTCAATGGTCAGTTGTTAGAGGCTCTAGTAAGAAAGTTAAGAGTGTGATAGGGCTGATATTGCAGCATTAGCTAACGCACTTAAAAACATAACTGTGGTAAGCAATGTTCAGCAGCCGCCAGTTGTGGAGCCTGCTGCAGTTGTAAACCAAGTGGTAGAAGAATCTTGTGTCTACTATGGTGAAGAGCATAATTATGAGTTTTGTCCTAACAATCCAGCTTCTGTGTTTTTTGTAGGTAATCAAAGGAATAACCCATATTCAAATTTTTATAATCCAGGTTAGCGTAACCACTCCAAGTTTGTGTGGGGAGAGCAAAGAAGTAATTCGCAAGCCCCCCAAGCACAACAAAAGGTGGCAAATCAGCCAGGATTTGTTTTGTAGAACCAGCAAGGATTGCCCCAGCAAAATAAGCAGGCTATCCATCAAAATTCGGGTAATTCTCTGGAGTCAATGATGAAGGATTATATGGCACGAAATGATGTCGTAATCCAAAGTCAACAGGCTTCATTGAGAGTCCTAGAGTTGCAAGTGGGTCAGCTAGCTAATGAGCTGAAGGCACTAAAGGATTGGAATTCTGTAATTCCGTAAAGCGGAAGCGTGATTGGGACCGATTCGTAATTAATTTTTGTTTAATCTAAAATACCAATACATTGGCAATAAACTTAGAACTATTCTAGACTTATATTAAGGCTAAGCATACAAAAATATTAGATCTAAATCTAATTTATATAGTAACAAATTACTTACTCTCGTTGACGACTCAGATTAAATTCACCAATTGCTTGTGAAATAATCACGAACTAGTGCGAACACCACCACTATGGCTACATCGGTATGACTCTAAGACTTCTTGAAGCAGGAGACTTGTGGGAGTCTTTTGGGAGTGATTTTTGAGAGAAGGAGAGACAATGGGATACCTTTCACCCCACCCCAGGGGTCCTATATATAATAAAGGCCAAGACATTTTTCCTAATAGGAAAATGTCTCTAATTTTAATAAATAATTAATTAATTACCCAATTAAATATCATATATTTAATCTTAGGGATTTTATTAAAATTAAAATTAATATGAATCCAATTCATATTAAATTTATCTGAACTCTTTCAAATATTTTCTCTCAAGAATTAATTTTTGAAATTTAATTAAAAAATTATATTTTATATTATAATGCATCAATATACATTATATGATTTCCCAAATAAATTGAACACTTATATTTATTTGCTTCAAGTCTCTTTACGAGCTACCAGTGGGACCTAATGGACCTACAGATCAGAAGCTCCAACGATAGGAGACTAATTGGCTAAACTCATTAACCAAGTTAGTCTCCATTCGTTAACTGTGGGTCACTCCACTAAAGACCCACAACTGCACTTTTCTCACTGCAGAATATTTCTGTGTCCACGGATATCGACCAATAACAGCAAGTTAGTCCTTCACGAGTGTTCGTAACTCCACCTGGGTCAAATTACCGTTTTACCCCTGAGTTGCCTCTACTTCCTTAAGTACCAGTGCTCCTCTAATGAACAACTTGTTTGTGGTCCAACCATCAAACAGAAAACCCCTCTTGGGCCAGTGAGAGGGTAGGGCCCTTTGTTCAAGACCCGGAGACACTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAAACAAATTTTATACTTGTATTTAATAAAGTGTTATTTAGTTTTCTGCAATAAAATGTTTATTGTTAAATATTGCACTATTTGACCCAAATCCAATAAACTAAAGATCCAAGGTTGTTTGTATGTAACTTGAACTAGTATGTGGGGACATACGAGGATCGATGTTCAAGTAACAACCTAAAAGGTCTATAGTACAAGGATAAGGTTGGGTACCTTATCCTGGTGACACTATGGATACGACCCACTTTGTATTATGATACAAACGCTATGATCCAACGCGTTCATGTAGTTGACATGCGAGTGGGGGTATCCTATGCAATGAGTTTGCATAAGACCGGACCGCGAAATAGTTAACCACTAACTGTAACACCGTTAGTTGGCTTGGTTTCTATTTCACTAGGATGACCTAGACAACTTAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGGGTGAGAGTGCCCAGCACGCCGACTCAATAAGCCTACCATTTTGGGGACAATACCGAGTGGGGAGCTGGGAACATAATCACACAAGATGGAATTCACTCCTTCCCGACTTTAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGACTTGAACAATGGGCCCAACCCTCTCTATGGCACGAGAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGTACTGGGAACTTAAGGACAAAGATGTAAACCAGGGGTAAAACGGTAATTTGACCCAGCTGGGATACGAACACACGTGAAGGACTGACTTGTAGTATTGGTCGATATCCGTGGACACAGAAATATTCTGCAGTGAGAAGAGTGCAGCTGAGGGTCTTTAGTGAAGTGACCCACAGTTAACGAATGGAGACTAACTTGGTTAATGAGTTTAAGCCAATTAGTCTCGTATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACTAGTAGCTCGTAAAAGGACTTGAAGCAAACTAATATAAATTGTAAATTGAAAGTGTTCAATTTATCTGGGGAATTGTATAATGTATATTGATGCATTATAATATAAAGTTTATGAAACTTTATAATATAATTTTTGAATTAATTTCAAAAATTAATTCTTGAGAGAAAATGTTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATAAAATCCCTAAGATTAAATATATGATATTTAATTGGGTAATTAATTAATCATGGAATTAATTAATTATTTATTAAAATTAGAGACATTTTCCTATTAGGAAAGAAAATATTTGAAAGAGTTCAAATAAATTTAATATGAATTGGATTCATATTAATTTTAATTTTAATAAAATCCCTAAGATTAAATATGTGATATTTAATTGGGTAATTAATTAATTATGGAATTAATTAATTATTAAAATTAGATATTGTTCAGATAATAGATTTGAACTTATTCCTAGACCTTTTCCTATTAGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCCCATTGTCTCTCCTTCTCTCAGAGATCTCTCCCAAAAGACTCCCACAAGTCTCTTGCTTCAAGAAGTCTTAGAGATATACCGGTGTAGCCGATTGGCGGTGTTCGCACAAGAGGGTTGCTGCATTTTCAATCTTATTAGCAAGAAAAGGGGAATTGATCAAGGCTTTCTACAAAAGTAAGTTTTCTATGAAATCCTTGATCACTAGGATCAATCTAGTTGATCTTTTAGCATGTTTATAGCCTATGTACAACCCATTAAATATAGATTTATTGCTGTAATATTTTGCAAATTGTATTGGTATTTCAATTAGAATCTAAGACTCTGAGTAGGTTCGGTAATACTTTCCGCTGCGTGGGGCTTTTATCCCTTCAGACACCACTTAAGGGAACACTCATCTACTTCCTTAAAAGTCGGGAAGGAGTGAATTCCATCTTGTGTGATTATGTTCCCAGCTCCCCACTCGATCTTGTCCCCAAAATGGTAGACTTATTGAGTCGGCGTACTGGCCACTCTCACCCATACATATCAAAGGACAATCCCTCGTGAACAGGAGTCCATAATCCACTCAGGATTCAGACTAAGTTGCCTAGGTCATCCTAGTGAAATAGAAACCTAACCAGTTAACGGTGTTATAGCTAGCGATTACTATTTCGCGGTACGGTCTTATGTAAACAATTTCATCAAGGACATTGCTTCCGAGGTACAAACACTTGCTATAACTGTGGTCAGATGGGCCACATGAGAAGAGATTGTCCAACATTGTTTCAGAGGACTAGTGGTGCACAAGGCTCATTTTCTCAACACGATCAAACCAGGACACAGGCTAGTCAAGGACAACCTAATTTGCAAGCAAGAGTCGTTGCAACCAGCAGTGAAGGCCAATCCAATATTGCGAACTCTAGTGGGTCAAAGTCCAAGGGAAAATATTCGCCATGACTTAACAAGAAGCTCACGGATCGCCTGATGTTGTTATGGGTATGTTATCTATTGGTAAAAATGCTCGTACTTTAATAGATCCTGGTGCTACGCATTCTTTTATTTCTCCTATATTTTCTGTTGGAATTAATAAGATCTCAGAGTCCTTACTTGATGATTTAATAGTAGCTACTCCAGTTGGAAAATCCTTGTTGGCGAATAGTGTTTATCGAAATTGTACGGTCATAGTTGGTGATAGGGAGTTGAACGTTGATCTAATACCCTTGGATATTCATGATTTTGATGTTATCTTGGGGATGGATTTCTTATCTGCACATCATGCCACAGTAGATTGCTTTCAAAAAGAAGTTGTGTTTAAACGACCAGGAGAAACTGAAGTTACTTTTAGGGGTGAGAGAAAAATTGTGCCTTCGTGTGTGATATCAACATTGAAGGTTGGTAAACTGCTTGGGAAAGGTTGTTCAGCTTACTTGGCTCATATAGTTGACACTGAGGTGAGTAAATCAAAGATTGAAGATATACCTGTGGTTAGGGACTTTCCAGATGTATTTCCAGAAGAATTGCCTGGATTACCACTTGATCGAGAAGTAGAGTTTGTGATTGATTTGATACCAGGTACTGCTCCTATTTCACAAGCACCATATCGAATGGCCCCAACGGAATTGAAAGAATTGAAGCTACAGTTGCAAGAGCTCGTTGATAAGGGTTTTGTTAGGCCTAGTGCATCTCCATGGGGTGCACCAGTGTTGTTTGTGAAGAAAAAGGATGGTACGATGAGGTTATGTATCGATTATAGGCAGTTGAATAAGGCGACAATACGTAATAAGTATCCTTTGCCTAGGATAGATGACTTGTTTGATCAGCTGAAAGGTTCCTCGATGTTTTCTAAAATTGACTTACGATCAGGGTATCATCAACTTAAGATTAGAGAAACGAATGTGCCAAAGACTGCTTTCAGGACCCGATATGGGCACTATGAGTTTTTGGTCATGCCGTTTGGGTTGACTAATGCCCCTGCAGCCTTTATGGATCTCATGAACAGGGTGTTCCATTCTTACTTAGACAAATTCGTGATTGTGTTCATTGACGACATATTGGTATATTCCAAAAGTAAAGAAGAGCATGGGGAACATCTCAAAATTGTATTGCAGGGAGTTGTATGCTAAAGTTAGCAAGTGTGAATTCTGGCTAAATCAGGTTGTGTTTTTGGGCCATGTAATTTCTGTAGAAGGCATATTTGTTGATCCTCAAAAGATTGAAGCAGTAGTTAAATGGGAGCGACCTACATCCGTTACGGAAGTTCGTAGCTTCCTTGGACTAACTGGGTATTATCGTCGCTTTGTTGAAGGATTCTCCAAGCTAGCTCTCCCATTGACTAGCTTGACTAGAAAGAATTCGAAGTTTGTTTAGACTGACAAGTGCGGGCAAAGTTTCCATGAACTGAAGAAGAGGTTAGTTTCTGCTCCAATACTTACACTACCAACGCCCGGTGAGGAGTTTATTATTTACAGTGATGCTTCTCATCAGGGTTTGGGGTGTGTGTTAATGCAAAATGGTAAGGTAATAGCCTATGCTTCTAGGCAGTTGAAGAAGCACGAGCACAATTATCCAACTCATGATCTTGAGCTAGCTGCAGTAGTGTTATCTTTAAAGGTTTGACGACATTATTTATATGGGGAGAAGTGTCATATTTATACAGATCATAAAAGTCTAAAGTACATCTTCGATCAAAAGGAGTTGAATTTGCGTCAGAGAAGATGGCTTGAGCTACTAAAGGATTATGATTGTACCATTAATTATTACCCAGGGAAGGCTAATGTGGTTGCAAACGCCTTAAGTAGAAAAGGGCATGGTCCAGTAACCCCATCTAATGCCATGAGTTTCTCCTTGTTGGGTGAATTCAGTAGCATGAATGCAGAATTATCTGTGGATGAGCTAGGATCCTTAATTGCAAGTTTTCGGGTAAGGCCTGTTTTGATTGACAAGATTATAATAGCTCAATCTGATGATCCAGTTCTTGATAGGCTTAAGGGAGAAGTGAAAAATAATCAGCGATCAGATTATGTGTTGAGAGATGATGGAGCACTAACCAAGTTTGATAGGTTATGTGTACCTAACAATCCAAACTTAAAGAAGGAAATACTTGACGAAGCTCATAGTTCAGGTTATGCAATGCATCCTGGTAGTACAAAAATGTATCGAACATTGAAGGAGCATTATTGGTGGCAAGGCATGAAAAGAGAAATAACAGAATATGTTTCTAGATGCTTAATCTGCCAACAAGTGAAACCAGAACGCCAAAGAGTGGCAGGACTTTTGAATTCTTTGCCAATTCCAGAATGGAAGTGGGAGCATATTACGATGGATTTCTTATTTGGTCTTCCTCGTGCACAGAGTTGTTATGATGGTATTTGGGTGATTGTGGACAGATTAACAAAAACTGCTAGGTTTTTGCCAATCAAGATCACTTATTCTTTAGATTAACTGGCAAAGTTGTATGTGGATGAGATAATAAGTTTGTATGGAGCACCAGTTTCGATAGTTTCTGATAGAGACTCGAGGTTCACTTCTAAATTTTGGCCTAGTTTACAACAAGCATTGGGTACTAAGCTACATTTTAGTACGGCCTTTCATCCCCAAATAGATGGACAATCAGAAAGGACTATACAAACATTGGAGGACATGTTAAGGGCCTGTGTTTTGCAATTTAAAGGAAGTTTGGATACTCACTTGTCACTAATGGAGTTTGCGTATAACAATAGTTACCATTCAAGCATTGGAATGACACCATTTGAGGCATTGTATGGTAGGAAGTGTAGAACTCCAGTTTGTTGGGATGAAGTTGGTGAGAGAAAATTGATGGGTCCCGAACTCGTGCAAATCACTGCAGAAAAGGTGAAGGTAATCAAAGAAAATTTGAAAGGGGCACAAGACTGACAAAAGAGCTATGCAGATAAGCGTCGGAGAGATTTAGAATTTGAGGTTGGTGATAAAGTTTTTCTTAAGCTATCTCCTTGGAAGGGTGTATTGAGGTTTGGTAAGAAAGGAAAATTGAGCCCTAGATATATCGGTCCCTACGAGATTCTTGAATGTATTGTACCAGTGGCATATCGCTTGGCTTTACCAATGGAGCTCTCTCAAATTCATGATGTATTTCATGTTTCAATGTTACGTAAGTACATCTCAGATCCATCACATGTCCTTGAGACTCAACCGGTGCAATTGAAAGAAAACTTATCTTATGAAGAGGAGCCCGTGCGAATATTAGACAAAAAGGAACAAGTGTTACGAAATAAGACTATTCCCTTGGTTAAGGTCTTATGGAGGAATCATGCAATGGAGGAGGCAACTTGGGAAAGTGAGGAGCAGATGCGTATCAAATACCCTCAACTTTTTGCTTGATGGACGTGACTGAATTTCGAGGACGAAATTTCCAAAAAGAGGGTTAATACCTATTTCTACGTGGTTATAATAACAATAACAATAATAATAATAATAATAATAAAAGGGAAAAGAATAGCAAGCTTCCAACGGAAGCTTTAGAAAAAAAAAGGAAAGGAAATAAACTTTACTTAATAAAAAAAAAAAAAAAAGAAATTAGAAGAGGGGAAGACAGAATCGGGGAAAGAAAAGAAGAAAAAGAAAAAGGGGAGAAAACAGAGAAAGGGGAGGGAGACGGAAGGCAACGAGGAGTCAAATTTGGGCATTTTTGAACGACTTTGGAAGGGAAAAACAAATCAAGAAGCACACAACATTGGATTCAAGTATTGGGTAAGTTTCTTGTTCTTGGTTTGAGCTTTTGCACAAGTTAAGAAGCTAAAAAAATGGGTTTCATTTGTGGGTTTTCTTCTTTGACTTGAATACTCCATAGATTAGTTTGAAAACTAGGAGATTCATAATGGGTTGAGTTCAAAGAGAGAAAAACTTGATAAAAACCCATAGTTTAAGCGAAAAAAAAGGGGGAAGAAATTGATGATGGTTATTCATAGGTTGTTGGTTTGCAAGCTTTTAAGGGATAATGTTCATGGAGAACAAGGAGATAATGTTCATGGAGAAGAAGAGAAGAAATGAAAAGAATTAAGCTTATTATGAACATGGGCAAAATGGAGTTATTGGAAACTTTATTTTAGAAATATGATACTAATTACATGGTAGTTGGAGGCCAAGCTCATGAAAATTCTAGTTATTCCAAGTGTTAAAGGGAAACTAAAGCTTGGTATAATCTAGTGATGTGTTTTAATATGGAGATTTAAAAAGCCGTTAATACTTGGGTAATTATTATTTCAGGTCAAACAGAGATCGGAACCGCCTACGACCCAAACTTCTCTCATCAATAGTATAGTGAGTGGTTATTCTTCAAAATACTTTTCTTATTTAGAAATTAATGAAATTTGAGTTTGAAGTCAATTATGATATATGTATATATATATGTATATATTTGTACAAATGAGTTGGTTGTTGAGGATTATGACAATTTCTAAGACTATTGTAGAAAGGTGACTTATGGTTTTGAAGCTTTAAGATTTTAGCCTATCGGCAAAGGCCCAAGTTCTTTTGAAATTTTACGATCGTATAACTATACATTTCAAATATTTGGAAGTTTTAAAGTGAATGAAGTGTTGCAGGGGAATATTGGGGCCTTAGGTGCCAAATCCGGATTCCGAATCCTGGACCTGGGGGGGTGTTACAATTCCAGTCAACATACCTGAAGTGTGAGGCTAACACTTGGCTTGGCTTTATCAAGCAGTGATTATTGCTTACAATGTATGCCTCCATTGTCCCCCGTGATCGAGTGCTCTTGAAGGTTCAGAGTCCCAAAGAGTTCCAATGATATAAACTTGTTTGATAAGGGGATTATTGACACTGCCAATCTAGCTAGGCTTCAAAAAGGTGAGGTGCGCCAGGGTGGTTTGTTGTGCGGTGTCCATAGAGTGCTGGAGCAGCTTGAGATGGTTCTGGTCAGTAGGCTAGAATTCACTGAGAGGCAACTTCAAACCTACTAGAGCTATGATCGTTGAAGGGACACCACACTAAGGAGGGCTATGCAAGTAAATTTTTTCTAAGCCATATAAAGCCTTCCTAATTTTCCTTGATGATCTTATGAACCCATGCATTCCACCCCCGCCCATCATTCAAGAGGAAGAAGAAAACCCAGAGCCTGAACATAAAGAAGAATTAAAGGGAAGTTTCAGTTTCTTCGAGGAAATATTTTGATGAATGATTTTTTTGTGCTCGCCTTGCATGTGATGTGTTCTTTCTGCTTATGTTATGTTCTGCTTCTTTGTTTTTATCTAATGCTTTAAAATCTATCTCTGTCATGATTACGTAAATCTGTGATCTTGATCTTTAATGAAATCAAACATTGTTTTGTTTGGCACATCTGAGTATCTAACTTAATTTTCTTCTGAAATTTTGAAGCTTGGACTAGTAAGCTTAATTAGATCAAGGTGTTCTGATCTCCAGAAACCTTTTGCTTGAGCATTCCTTCTAGCCTAGTCATGACTGCAACAAAAGTTCTGAGGTAGCATTGTCTTATTTTGGTCCACCTTAAGCTTAATCTTAGTCCCACACTTAGTTTAAAATTCATATAGAAAAAATTAAGTTTATACTTATCATGTTGCTAATTCATTGAGGACAATGAATAATTTAAGTTTGGGGGACTTTTAGCTACTCCGCTTGTTTTGCCCGAGCATTCTTCTCCTCCATAATAATTTTTCTAGGTTGTTGAGTAACCAGGAAAATTTGTGACACCCACAGTTTGTCTTTGCGTCAAAAGATGACCTAGGAGAATATATAAAAAAATGATAAAAAATTGGCGAAAAGAAAATTGTGAAAATTTTGCTGTGAAAATTGAAAGAGCAAAAATTTTGAAGGATATGAATGATAATCTAGCAGTTTTCTGTCTCCCAGGGCTTAGGTGAGCTTCATCATAAAATGTCGCCATTCTGAGAAGCAAGGGATAGAATAACTACGGAATTTTGGGCTTAGCAATGAGTATTTAGCCTAGTTGGTGATGAGTTTGAGGCAAGGGTATACTGCACCATAAAGTGGGTCATCTCATGCTTAAGAGCTTATGACTATAGGGTTGCTTTAAGGCTGAAGAACAAAAGAATAAATCCCCTGAAATATGTGTTCAAATATGTCTGATAATAGAGCTAAGCTGTGGTAAGTTCTTAGGATTGAGTTAAAGGTGGTGATTATTTGTTCAATGCTGAAAGAATTATTTTGCTGCAGCAGTGCTTGGTTTTGCAGGATGCTCAGGTAAAGGTTGAAGGTAGTGTTGGAATATTTGTTTTGATTGAGTTATGCTATGACTAATGTTTTGAATTTTCAAGGGAAGGTGAGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTGTGGGTATGATAACTCTCCAAAAGGGAGTTATTTAGGTCTTAGTTCTATAGTGTTTTGTGTGTATTTTGTGTTAAATAATGTTGCTTTTAGATGAATATTATATGTTTTAACCCATTTGGAAGAATGGATGCTTGGAAAGTTATTTTGTGCAGAAAATATTGCGGAGTGACCCGCGGGAGCAAAATCCGTGATCCAGCAAAGCAGGAAGCAAAACTGCCACGTAACAGCTCGTAA

mRNA sequence

ATGTCATTAGCTAACGCACTTAAAAACATAACTGTGGTAAGCAATGTTCAGCAGCCGCCAGTTGTGGAGCCTGCTGCAGTTGTAAACCAAAACCAGCAAGGATTGCCCCAGCAAAATAAGCAGGCTATCCATCAAAATTCGGGTAATTCTCTGGAGTCAATGATGAAGGATTATATGGCACGAAATGATGTCGTAATCCAAAGTCAACAGGCTTCATTGAGAGTCCTAGAGTTGCAAGTGGGTCAGCTAGCTAATGAGCTGAAGGCACTAAAGGATTGGAATTCTGATGACCTAGACAACTTAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGAGGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCCCATTGTCTCTCCTTCTCTCAGAGATCTCTCCCAAAAGACTCCCACAAGTCTCTTGCTTCAAGAAGTCTTAGAGATATACCGGTGTAGCCGATTGGCGGTGTTCGCACAAGAGGGTTGCTGCATTTTCAATCTTATTAGCAAGAAAAGGGGAATTGATCAAGGCTTTCTACAAAAGTTCAGAGTCCCAAAGAGTTCCAATGATATAAACTTGTTTGATAAGGGGATTATTGACACTGCCAATCTAGCTAGGCTTCAAAAAGGTGAGGTGCGCCAGGGTGGTTTGTTGTGCGGTGTCCATAGAGTGCTGGAGCAGCTTGAGATGGTTCTGCTTGGACTAGGTTGCTTTAAGGCTGAAGAACAAAAGAATAAATCCCCTGAAATATGTGTTCAAATATGTCTGATAATAGAGCTAAGCTGTGCAGTGCTTGGTTTTGCAGGATGCTCAGGTGAGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTAAAATATTGCGGAGTGACCCGCGGGAGCAAAATCCGTGATCCAGCAAAGCAGGAAGCAAAACTGCCACGTAACAGCTCGTAA

Coding sequence (CDS)

ATGTCATTAGCTAACGCACTTAAAAACATAACTGTGGTAAGCAATGTTCAGCAGCCGCCAGTTGTGGAGCCTGCTGCAGTTGTAAACCAAAACCAGCAAGGATTGCCCCAGCAAAATAAGCAGGCTATCCATCAAAATTCGGGTAATTCTCTGGAGTCAATGATGAAGGATTATATGGCACGAAATGATGTCGTAATCCAAAGTCAACAGGCTTCATTGAGAGTCCTAGAGTTGCAAGTGGGTCAGCTAGCTAATGAGCTGAAGGCACTAAAGGATTGGAATTCTGATGACCTAGACAACTTAGTCTCAATCCTGAGTGGATTATGGACTCCTGTTCACGAGGAGTTGTCCTTTGATTTGTATGGTGAGAAGAGTGCAGCTGAGGGAAAAGGTCTTGGCCTTTACCTATATATAGGACCCCTGGGGTGGGGTGAAAGGCATCCCATTGTCTCTCCTTCTCTCAGAGATCTCTCCCAAAAGACTCCCACAAGTCTCTTGCTTCAAGAAGTCTTAGAGATATACCGGTGTAGCCGATTGGCGGTGTTCGCACAAGAGGGTTGCTGCATTTTCAATCTTATTAGCAAGAAAAGGGGAATTGATCAAGGCTTTCTACAAAAGTTCAGAGTCCCAAAGAGTTCCAATGATATAAACTTGTTTGATAAGGGGATTATTGACACTGCCAATCTAGCTAGGCTTCAAAAAGGTGAGGTGCGCCAGGGTGGTTTGTTGTGCGGTGTCCATAGAGTGCTGGAGCAGCTTGAGATGGTTCTGCTTGGACTAGGTTGCTTTAAGGCTGAAGAACAAAAGAATAAATCCCCTGAAATATGTGTTCAAATATGTCTGATAATAGAGCTAAGCTGTGCAGTGCTTGGTTTTGCAGGATGCTCAGGTGAGTTAGTATTGCTCGGGACGCGCAATAGTTCAAGTTTAAAATATTGCGGAGTGACCCGCGGGAGCAAAATCCGTGATCCAGCAAAGCAGGAAGCAAAACTGCCACGTAACAGCTCGTAA

Protein sequence

MSLANALKNITVVSNVQQPPVVEPAAVVNQNQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKALKDWNSDDLDNLVSILSGLWTPVHEELSFDLYGEKSAAEGKGLGLYLYIGPLGWGERHPIVSPSLRDLSQKTPTSLLLQEVLEIYRCSRLAVFAQEGCCIFNLISKKRGIDQGFLQKFRVPKSSNDINLFDKGIIDTANLARLQKGEVRQGGLLCGVHRVLEQLEMVLLGLGCFKAEEQKNKSPEICVQICLIIELSCAVLGFAGCSGELVLLGTRNSSSLKYCGVTRGSKIRDPAKQEAKLPRNSS
Homology
[Close]
BLAST of Spg026620.1 vs. NCBI nr
Match: XP_030509265.1 (uncharacterized protein LOC115723943 [Cannabis sativa])

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-06
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 34  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA 90
           G  QQ + + H  +   +SLES+M+DYMA+ND VIQSQ ASLR LELQ+G LANELKA
Sbjct: 192 GFSQQPRHSQHAQNAQPSSLESLMRDYMAKNDAVIQSQAASLRNLELQLGHLANELKA 249

[Close]
BLAST of Spg026620.1 vs. NCBI nr
Match: XP_030510138.1 (uncharacterized protein LOC115724905 [Cannabis sativa])

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-06
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 30  QNQQGLPQQNKQAIHQNSG---NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANE 89
           Q +Q  P    Q  HQ  G   +SLES+M+DYMA+ND VIQSQ ASLR LE+Q+GQLAN+
Sbjct: 319 QGKQSFPPGFSQQPHQPQGSQTSSLESLMRDYMAKNDAVIQSQAASLRNLEVQLGQLAND 378

[Close]
BLAST of Spg026620.1 vs. NCBI nr
Match: XP_030477908.1 (uncharacterized protein LOC115694945 [Cannabis sativa])

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-06
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 34  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA 90
           G  QQ + + H  +   +SLES+M+DYMA+ND VIQSQ ASLR LELQ+G LANELKA
Sbjct: 206 GFSQQPRHSQHAQNAQPSSLESLMRDYMAKNDAVIQSQAASLRNLELQLGHLANELKA 263

[Close]
BLAST of Spg026620.1 vs. NCBI nr
Match: XP_030494874.1 (uncharacterized protein LOC115710657 [Cannabis sativa])

HSP 1 Score: 63.5 bits (153), Expect = 3.9e-06
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 34  GLPQQNKQAIHQNSG--NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKA 90
           G  QQ + + H  +   +SLES+M+DYMA+ND VIQSQ ASLR LELQ+G LANELKA
Sbjct: 149 GFSQQPRHSQHAQTSQPSSLESLMRDYMAKNDAVIQSQAASLRNLELQLGHLANELKA 206

[Close]
BLAST of Spg026620.1 vs. NCBI nr
Match: XP_030502440.1 (uncharacterized protein LOC115717596 [Cannabis sativa])

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-06
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 31  NQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELK 89
           +QQ  PQQ  Q    +  +SLES+M+DYMA+NDVVIQSQ ASLR LE+Q+GQLAN+LK
Sbjct: 295 SQQPRPQQPHQP-QGSQTSSLESLMRDYMAKNDVVIQSQAASLRNLEIQLGQLANDLK 351

[Close]
BLAST of Spg026620.1 vs. ExPASy TrEMBL
Match: A0A6J1G7Q6 (uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC111451598 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.3e-06
Identity = 44/84 (52.38%), Postives = 51/84 (60.71%), Query Frame = 0 

Query: 15  NVQQPPVVE-PAAVVNQNQQGLPQQNKQAIHQNSGNS---------LESMMKDYMARNDV 74
           N Q PP    P     QNQ  L   ++QA  Q  G S         LES++K+YMARND 
Sbjct: 350 NQQMPPKANYPPGFGLQNQ--LTYDSQQATTQGEGTSQAQHISGTLLESLIKEYMARNDA 409

Query: 75  VIQSQQASLRVLELQVGQLANELK 89
           VIQSQQ SLR LE+QVGQLANEL+
Sbjct: 410 VIQSQQVSLRNLEVQVGQLANELR 431

[Close]
BLAST of Spg026620.1 vs. ExPASy TrEMBL
Match: A0A6J1H7K8 (uncharacterized protein LOC111461167 OS=Cucurbita moschata OX=3662 GN=LOC111461167 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.3e-06
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 0 

Query: 32 QQGLPQQNKQAIHQNSG---------NSLESMMKDYMARNDVVIQSQQASLRVLELQVGQ 89
          Q  L   ++QA  Q  G          SLES++K+YMA+NDVVIQSQQASLR LE+QVGQ
Sbjct: 14 QNQLTYGSQQATTQGEGTSQAQHIPETSLESLIKEYMAKNDVVIQSQQASLRNLEVQVGQ 73

[Close]
BLAST of Spg026620.1 vs. ExPASy TrEMBL
Match: A0A6J1GJ68 (uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC111454344 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-05
Identity = 35/61 (57.38%), Postives = 45/61 (73.77%), Query Frame = 0 

Query: 28 VNQNQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANEL 87
          VN   +G+ Q         SG S+ES++K+YMA+NDVVIQSQQASL+ LE+QVGQLA EL
Sbjct: 24 VNTQGKGITQ-----AQYTSGTSIESLIKEYMAKNDVVIQSQQASLQNLEVQVGQLATEL 79

Query: 88 K 89
          +
Sbjct: 84 R 79

[Close]
BLAST of Spg026620.1 vs. ExPASy TrEMBL
Match: A0A6J1DYG0 (uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025764 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-05
Identity = 36/72 (50.00%), Postives = 47/72 (65.28%), Query Frame = 0 

Query: 17  QQPPVVEPAAVVNQNQQGLPQQNKQAIHQNSGNSLESMMKDYMARNDVVIQSQQASLRVL 76
           +QP V      +   QQ   Q+ +    QN+ ++LE+MMK+YMAR D VIQSQ AS+R  
Sbjct: 173 KQPYVPPTQQYIPPPQQRYNQRTQTPPVQNNNSNLENMMKEYMARTDAVIQSQAASMRNF 232

Query: 77  ELQVGQLANELK 89
           E Q+GQLANELK
Sbjct: 233 ETQLGQLANELK 244

[Close]
BLAST of Spg026620.1 vs. ExPASy TrEMBL
Match: A0A6J1DVZ9 (uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024970 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.6e-05
Identity = 51/148 (34.46%), Postives = 74/148 (50.00%), Query Frame = 0 

Query: 2   SLANALKNITVVSNVQQPP-----VVEPAAVVNQN----------QQGLPQQNKQAIHQ- 61
           +L N +KN+   +     P     + EP   VNQN          Q GL   N+Q   + 
Sbjct: 191 NLTNMVKNMNTATTSSNSPGLGRKLREP---VNQNTSQYQQKVAQQPGLLMPNQQQGTRP 250

Query: 62  --NSGNSLESMMKDYMARNDVVIQSQQASLRVLELQVGQLANELKALKDWNSDDLDNLVS 121
             NS NS+E+MM++YM RND +IQSQ A  R LE+Q+GQ+AN+LK      +D +++   
Sbjct: 251 AANSSNSMETMMREYMTRNDALIQSQAAVFRNLEVQLGQMANKLKNRPRVQTDKMEHHAE 310

Query: 122 -ILSGLWTPVHEELSFDLYGEKSAAEGK 131
             L  +     E +  D    K AAE +
Sbjct: 311 PQLENIEEDTAENMPIDEDKRKRAAEAE 335

The following BLAST results are available for this feature:
BLAST of Spg026620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_030509265.13.9e-0662.07uncharacterized protein LOC115723943 [Cannabis sativa][more]
XP_030510138.13.9e-0659.68uncharacterized protein LOC115724905 [Cannabis sativa][more]
XP_030477908.13.9e-0662.07uncharacterized protein LOC115694945 [Cannabis sativa][more]
XP_030494874.13.9e-0662.07uncharacterized protein LOC115710657 [Cannabis sativa][more]
XP_030502440.15.1e-0663.79uncharacterized protein LOC115717596 [Cannabis sativa][more]
BLAST of Spg026620.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg026620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G7Q69.3e-0652.38uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC1114515... [more]
A0A6J1H7K89.3e-0657.58uncharacterized protein LOC111461167 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
A0A6J1GJ681.6e-0557.38uncharacterized protein LOC111454344 OS=Cucurbita moschata OX=3662 GN=LOC1114543... [more]
A0A6J1DYG03.5e-0550.00uncharacterized protein LOC111025764 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DVZ94.6e-0534.46uncharacterized protein LOC111024970 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
BLAST of Spg026620.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 66..86

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg026620Spg026620gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18369473..18369554CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18369708..18369747CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18369827..18369853CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18369923..18370004CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18370661..18370669CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18371130..18371283CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18376850..18377081CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18377716..18377735CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18378106..18378185CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18379665..18379859CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18380091..18380176CDS
Spg026620.1-cdsSpg026620.1-cds-scaffold6:18381835..18381838CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg026620.1Spg026620.1-proteinpolypeptide