Spg025920.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg025920.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold7: 3214955 .. 3215356 (+)
Sequence length	402
RNA-Seq Expression	Spg025920.1
Synteny	Spg025920.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACACTGGAGATATCAATACGACTCCAGAGACTTCTTTCGCCCAGCATTTCCATATCCTTCGTAAGACATGTTCAAGCTTGGACATTTCAACCAATCTTCTGTACTGTATATTGTGCTTCTCCTTCAAATCAGTCACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTGCTATAATCTTCAAGGGCCTTCCATCAACATTTCATGCCTTTCTTCTTTCAATTGTGATGGCATTCTCAGGTGCATTTAATGCCTTGATGCTTGCTACTAATAAGCCAAGAATTGCCAAGTTCTGCAGCTACTATTCTATGGCGTTTATGGCCTCAGCTGTAGTTTTATTGATCTGGGCTTTGTTTCAGACAGTTTTTAACCTGATATGA

mRNA sequence

ATGAAGAACACTGGAGATATCAATACGACTCCAGAGACTTCTTTCGCCCAGCATTTCCATATCCTTCGTAAGACATGTTCAAGCTTGGACATTTCAACCAATCTTCTGTACTGTATATTGTGCTTCTCCTTCAAATCAGTCACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTGCTATAATCTTCAAGGGCCTTCCATCAACATTTCATGCCTTTCTTCTTTCAATTGTGATGGCATTCTCAGGTGCATTTAATGCCTTGATGCTTGCTACTAATAAGCCAAGAATTGCCAAGTTCTGCAGCTACTATTCTATGGCGTTTATGGCCTCAGCTGTAGTTTTATTGATCTGGGCTTTGTTTCAGACAGTTTTTAACCTGATATGA

Coding sequence (CDS)

ATGAAGAACACTGGAGATATCAATACGACTCCAGAGACTTCTTTCGCCCAGCATTTCCATATCCTTCGTAAGACATGTTCAAGCTTGGACATTTCAACCAATCTTCTGTACTGTATATTGTGCTTCTCCTTCAAATCAGTCACCCTCATTCTCTTGTTTCCTTATGAGCAAGTGAATGGGAATCCTGTGCCTGCTATAATCTTCAAGGGCCTTCCATCAACATTTCATGCCTTTCTTCTTTCAATTGTGATGGCATTCTCAGGTGCATTTAATGCCTTGATGCTTGCTACTAATAAGCCAAGAATTGCCAAGTTCTGCAGCTACTATTCTATGGCGTTTATGGCCTCAGCTGTAGTTTTATTGATCTGGGCTTTGTTTCAGACAGTTTTTAACCTGATATGA

Protein sequence

MKNTGDINTTPETSFAQHFHILRKTCSSLDISTNLLYCILCFSFKSVTLILLFPYEQVNGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPRIAKFCSYYSMAFMASAVVLLIWALFQTVFNLI

Homology

[Close]

BLAST of Spg025920.1 vs. NCBI nr
Match: XP_022992466.1 (uncharacterized protein LOC111488762 [Cucurbita maxima])

HSP 1 Score: 223.8 bits (569), Expect = 8.9e-55
Identity = 112/131 (85.50%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MKNTGDINTTPETSFAQHFHILRKTCSSLDISTNLLYCILCFSFKSVTLILLFPYEQVNG 60
           MKN G IN +PETSF QHFHIL K CS LDISTNL+YCILC SFK+VTLILLFPYEQVNG
Sbjct: 39  MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 98

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPRIAKFCSYYSMAFMASAVVL 120
           NPVP IIFKGLPSTFHAFLLS VMAFSGAFNALML+ NKP+IA+FCSYYSMAFMASAVVL
Sbjct: 99  NPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 158

Query: 121 LIWALFQTVFN 132
           LIWA++QTVFN
Sbjct: 159 LIWAVYQTVFN 169

[Close]

BLAST of Spg025920.1 vs. NCBI nr
Match: KAG6601352.1 (hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 223.4 bits (568), Expect = 1.2e-54
Identity = 111/131 (84.73%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MKNTGDINTTPETSFAQHFHILRKTCSSLDISTNLLYCILCFSFKSVTLILLFPYEQVNG 60
           MKN G IN +PETSF QHFHIL K CS LDISTNL+YCILC SFK+VTLILLFPYEQVNG
Sbjct: 1   MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 60

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPRIAKFCSYYSMAFMASAVVL 120
           NPVP +IFKGLPSTFHAFLLS VMAFSGAFNALML+ NKP+IA+FCSYYSMAFMASAVVL
Sbjct: 61  NPVPTVIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 120

Query: 121 LIWALFQTVFN 132
           LIWA++QTVFN
Sbjct: 121 LIWAVYQTVFN 131

[Close]

BLAST of Spg025920.1 vs. NCBI nr
Match: KAE8648779.1 (hypothetical protein Csa_009128 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 8.1e-32
Identity = 83/132 (62.88%), Postives = 88/132 (66.67%), Query Frame = 0


Query: 1   MKNTGDINTTPETSFAQHFHILRKTCSSLDISTNLLYCILCFSFKSVTLILLFPYEQVNG 60
           MKN  DIN +P+T FAQHFHIL                                   VNG
Sbjct: 10  MKNRRDINKSPDTCFAQHFHIL-----------------------------------VNG 69

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPRIAKFCSYYSMAFMASAVVL 120
           N VPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKP+IAKFCSYYS+ FM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 106

Query: 121 LIWALFQTVFNL 133
             WA+FQTVFNL
Sbjct: 130 FFWAVFQTVFNL 106

[Close]

BLAST of Spg025920.1 vs. NCBI nr
Match: EOY01535.1 (Uncharacterized protein TCM_011399 [Theobroma cacao])

HSP 1 Score: 103.6 bits (257), Expect = 1.3e-18
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 0


Query: 14  SFAQHFHILRKTCSSLDISTNLLYCILCFSFKSVTLILLFPYEQVNGNPVPAIIFKGLPS 73
           +F  H     +  SS+ + T +L  IL  SF   T+++L P+E V G+PVP I+FKG P+
Sbjct: 14  TFYPHHVSFSEMLSSIAVQTTILESILFISFTVATILILLPHEYVKGSPVPIIVFKGHPA 73

Query: 74  TFHAFLLSIVMAFSGAFNALMLATNKPRIAKFCSYYSMAFMASAVVLLIWAL 126
           TFHAF + I+ AFSGAF ALM   N PRIA  C  YS+A MASA+ LLIWA+
Sbjct: 74  TFHAFTICIIFAFSGAFCALM-TPNSPRIASLCGCYSIASMASAIGLLIWAV 124

[Close]

BLAST of Spg025920.1 vs. NCBI nr
Match: XP_040861221.1 (uncharacterized protein LOC121172803 [Glycine max] >KAG5059707.1 hypothetical protein JHK87_000736 [Glycine soja] >KAG5088117.1 hypothetical protein JHK86_000729 [Glycine max] >KRH75196.1 hypothetical protein GLYMA_01G069000v4 [Glycine max] >RZC28841.1 hypothetical protein D0Y65_000706 [Glycine soja])

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-18
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 21  ILRKTCSSLDISTNLLYCILCFSFKSVTLILLFPYEQVNGNPVPAIIFKGLPSTFHAFLL 80
           I + T +S+   T LL C+L   F  +T++L  PYE ++ NPVP I+FKG P TFHAF++
Sbjct: 8   IYQTTLASIPHYT-LLECVLGICFTVITILLQLPYEYIDNNPVPTIVFKGRPRTFHAFII 67

Query: 81  SIVMAFSGAFNALMLATNKPRIAKFCSYYSMAFMASAVVLLIWALFQTVFN 132
            I+ AFSGA NAL +A NK R ++ C YY+MA MASA+ +L+WAL  T  N
Sbjct: 68  CIIFAFSGATNAL-VAFNKSRFSRLCGYYAMASMASALAILLWALCCTCIN 116

[Close]

BLAST of Spg025920.1 vs. ExPASy TrEMBL
Match: A0A6J1JTM5 (uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.3e-55
Identity = 112/131 (85.50%), Postives = 120/131 (91.60%), Query Frame = 0


Query: 1   MKNTGDINTTPETSFAQHFHILRKTCSSLDISTNLLYCILCFSFKSVTLILLFPYEQVNG 60
           MKN G IN +PETSF QHFHIL K CS LDISTNL+YCILC SFK+VTLILLFPYEQVNG
Sbjct: 39  MKNAGAINMSPETSFPQHFHILGKACSRLDISTNLMYCILCCSFKTVTLILLFPYEQVNG 98

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPRIAKFCSYYSMAFMASAVVL 120
           NPVP IIFKGLPSTFHAFLLS VMAFSGAFNALML+ NKP+IA+FCSYYSMAFMASAVVL
Sbjct: 99  NPVPTIIFKGLPSTFHAFLLSTVMAFSGAFNALMLSANKPKIARFCSYYSMAFMASAVVL 158

Query: 121 LIWALFQTVFN 132
           LIWA++QTVFN
Sbjct: 159 LIWAVYQTVFN 169

[Close]

BLAST of Spg025920.1 vs. ExPASy TrEMBL
Match: A0A0A0KT20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607970 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.6e-55
Identity = 114/132 (86.36%), Postives = 120/132 (90.91%), Query Frame = 0


Query: 1   MKNTGDINTTPETSFAQHFHILRKTCSSLDISTNLLYCILCFSFKSVTLILLFPYEQVNG 60
           MKN  DIN +P+T FAQHFHIL KTCSSLDISTNLLY ILC SFK+VTLILLFPYEQVNG
Sbjct: 10  MKNRRDINKSPDTCFAQHFHILGKTCSSLDISTNLLYSILCLSFKTVTLILLFPYEQVNG 69

Query: 61  NPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPRIAKFCSYYSMAFMASAVVL 120
           N VPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKP+IAKFCSYYS+ FM SAVVL
Sbjct: 70  NLVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALMLATNKPKIAKFCSYYSLGFMVSAVVL 129

Query: 121 LIWALFQTVFNL 133
             WA+FQTVFNL
Sbjct: 130 FFWAVFQTVFNL 141

[Close]

BLAST of Spg025920.1 vs. ExPASy TrEMBL
Match: A0A5B7B2W8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.9e-20
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 35  LLYCILCFSFKSVTLILLFPYEQVNGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           +L  IL  SF +  +++  PYE ++GNPVP IIFKGLPS FHAFL+ I+ AFSGA+  LM
Sbjct: 41  ILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLM 100

Query: 95  LATNKPRIAKFCSYYSMAFMASAVVLLIWA 125
           +  +KPR+A FC Y SMA MASAV LLIWA
Sbjct: 101 MIPHKPRLATFCGYCSMASMASAVALLIWA 130

[Close]

BLAST of Spg025920.1 vs. ExPASy TrEMBL
Match: A0A5B7B649 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032284 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 35  LLYCILCFSFKSVTLILLFPYEQVNGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           +L  IL  SF +  +++  PYE ++GNPVP IIFKGLPS FHAFL+ I+ AFSGA+  LM
Sbjct: 48  ILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLM 107

Query: 95  LATNKPRIAKFCSYYSMAFMASAVVLLIWA 125
           +  +KPR+A FC Y SMA MASAV L+IWA
Sbjct: 108 MIPHKPRLATFCGYCSMASMASAVALMIWA 137

[Close]

BLAST of Spg025920.1 vs. ExPASy TrEMBL
Match: A0A5B7B2L8 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032286 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 35  LLYCILCFSFKSVTLILLFPYEQVNGNPVPAIIFKGLPSTFHAFLLSIVMAFSGAFNALM 94
           +L  IL  SF +  +++  PYE ++GNPVP IIFKGLPS FHAFL+ I+ AFSGA+  LM
Sbjct: 47  ILESILFASFTTANILIRLPYENIDGNPVPTIIFKGLPSAFHAFLICIIFAFSGAYCGLM 106

Query: 95  LATNKPRIAKFCSYYSMAFMASAVVLLIWA 125
           +  +KPR+A FC Y SMA MASAV L+IWA
Sbjct: 107 MIPHKPRLATFCGYCSMASMASAVALMIWA 136

The following BLAST results are available for this feature:

BLAST of Spg025920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992466.1	8.9e-55	85.50	uncharacterized protein LOC111488762 [Cucurbita maxima]	[more]
KAG6601352.1	1.2e-54	84.73	hypothetical protein SDJN03_06585, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8648779.1	8.1e-32	62.88	hypothetical protein Csa_009128 [Cucumis sativus]	[more]
EOY01535.1	1.3e-18	50.89	Uncharacterized protein TCM_011399 [Theobroma cacao]	[more]
XP_040861221.1	3.0e-18	50.45	uncharacterized protein LOC121172803 [Glycine max] >KAG5059707.1 hypothetical pr...	[more]

BLAST of Spg025920.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg025920.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JTM5	4.3e-55	85.50	uncharacterized protein LOC111488762 OS=Cucurbita maxima OX=3661 GN=LOC111488762...	[more]
A0A0A0KT20	9.6e-55	86.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G607970 PE=4 SV=1	[more]
A0A5B7B2W8	5.9e-20	60.00	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032285...	[more]
A0A5B7B649	1.0e-19	58.89	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032284...	[more]
A0A5B7B2L8	1.0e-19	58.89	Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_032286...	[more]

BLAST of Spg025920.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg025920	Spg025920	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg025920.1-cds	Spg025920.1-cds-scaffold7:3214955..3215356	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg025920.1	Spg025920.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane