Spg025887.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg025887.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	nifU-like protein 2, chloroplastic
Location	scaffold7: 171408 .. 173246 (+)
Sequence length	708
RNA-Seq Expression	Spg025887.1
Synteny	Spg025887.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGCCGTGGTGTTGAATTCCTCCCCTTACACCAGAGCCCCGCAAACCCTTGAAACTCCTTCTTCTTCTCGTTCCTTCAAGGTCCCTTTCATTTCTCGCTTATTCTTTTGCCATGTTTCACCCTCAAGAGAGCGCAGTCCTCTTTGGAGGAGATCATGTCGTTCCCTTCGAATTCGATTGCCGTCTAACTCACGCAGGCGAGGTATGATTCCTTTTTCGTTCTATTGAAGTTGATTGGATTGGTATAAAGTTCTGCTTGTTGATTCTATCGGGATGTTTTTGTTCACTATCGTCTCTTTAATTGTTCACTGTTAGGGTTGATAAGAGCTTTCTTTTGAGGTTACCAATCTTTGTCATTTGATTCGAAATTTGCTGTTTACAGTTACAAGAGCTGTTGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAGAGTGTGTTGGACGAGGTTCGACCATATCTTATTGCAGATGGTGGAAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGCGGCTCATGTCCGAGTTCTGTTATGACCATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTGGCAGTGGAACCAATAGCAGATGAAGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTAAATAAATGTTCACTTTGATTTAGATGTAATTTATATGTTGTTTCTGAATCGTATTTTCGCCTTTAATCTCTGACCTAGAGATACAACTTATAATGAAAGAGGGCTGCTCCCCCTCTGTTTTCCTGGACTCTTAGGGGCATAGTGGTATGGCTTCCACGGGTTCTTTGATATATATGATTATTGAGGTCGCTTTTACTTGAAATTGAGGGTAGGATTAAGCAAGCATTCTTTTTACTCAACTTCTACAATACTTCATATGGCATATTTCACTTTCTTGGATACTCTTGATAAAACACTTCTAGCTGTTTCCGAACCTATTATTTCTCATGTCATGATTACATCTTCCTTTCCTTCTTCATAGCAATATCAATTAAGTGCATCCAGTGTCCATGTGTCCAATTTTCTCATCCATATGCTATTTGGTATTGGTCCAAAACTGCGACCAGCTTGATTAGGCCTGCGGCATTTGTTGGCAATGAACAAGACATGATATTAATGCACTTGTCGTGATTTCAACGAAGGAATAAATTCCATTAAACGTTTGGATCCTACTAGTACTTGTAGGTTCTTACGTGCTGTGAATGTGTCAACTGTTTGAAATACTCGTTAATCTCCATGTGTTATCAACTTTTCGTAGCTTGTAAGGTATGTACGTTTTGTTTTTTATATCGACTTGGCTTGTGATAGATTTCCTATCTCATCTCATCCTTGCATCCCAGTTGGTTGGTATTCCTCTCTATTTGGATTGGTTGTAGTTCCATTGTTCATTATTATTTGTTCAACTCTGATACAGATTTCAACGCCTCTCTCAACTCCATAAGGAGACAAATTCAGACAATTCTTGTTTGTACAATTATGATTGACTGTTATTGCTGCCTATTTTTTTCCAGTGATGGCATAAGTTACTACATATTCAGAAGCTGAATTTTCTTTGGGCTCTTTTCTTAGGTACTCGAAGAGATAAGACCTTACCTTGTCGGGGCAGCGGGAGGATCTCTTGAACTTGTGGGCATCGAGGAGCCTATTGTTAAAGTTCGGATCACAGGCCCAGCCGCTGGGGTCATGACAGTTCGTGTGGCTGTTACACAGAAATTGCGAGAGAAGATCCCAGCCATAGCGGCCGTTCAACTTTTGTCATAA

mRNA sequence

ATGCATGCCGTGGTGTTGAATTCCTCCCCTTACACCAGAGCCCCGCAAACCCTTGAAACTCCTTCTTCTTCTCGTTCCTTCAAGGTCCCTTTCATTTCTCGCTTATTCTTTTGCCATGTTTCACCCTCAAGAGAGCGCAGTCCTCTTTGGAGGAGATCATGTCGTTCCCTTCGAATTCGATTGCCGTCTAACTCACGCAGGCGAGTTACAAGAGCTGTTGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAGAGTGTGTTGGACGAGGTTCGACCATATCTTATTGCAGATGGTGGAAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGCGGCTCATGTCCGAGTTCTGTTATGACCATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTGGCAGTGGAACCAATAGCAGATGAAGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTACTCGAAGAGATAAGACCTTACCTTGTCGGGGCAGCGGGAGGATCTCTTGAACTTGTGGGCATCGAGGAGCCTATTGTTAAAGTTCGGATCACAGGCCCAGCCGCTGGGGTCATGACAGTTCGTGTGGCTGTTACACAGAAATTGCGAGAGAAGATCCCAGCCATAGCGGCCGTTCAACTTTTGTCATAA

Coding sequence (CDS)

ATGCATGCCGTGGTGTTGAATTCCTCCCCTTACACCAGAGCCCCGCAAACCCTTGAAACTCCTTCTTCTTCTCGTTCCTTCAAGGTCCCTTTCATTTCTCGCTTATTCTTTTGCCATGTTTCACCCTCAAGAGAGCGCAGTCCTCTTTGGAGGAGATCATGTCGTTCCCTTCGAATTCGATTGCCGTCTAACTCACGCAGGCGAGTTACAAGAGCTGTTGCAACTTCCAATTCGGCACTGGAATTGCCGCTGACTGCAGAAAATGTTGAGAGTGTGTTGGACGAGGTTCGACCATATCTTATTGCAGATGGTGGAAATGTGGCATTACATGAAATAGACGGAAATGTTGTACGGTTGAAGCTACAAGGAGCATGCGGCTCATGTCCGAGTTCTGTTATGACCATGAAGATGGGAATTGAACGGCGTTTGATGGAGAAGATCCCTGAAATAGTGGCAGTGGAACCAATAGCAGATGAAGAAACTGGATTGGAGCTCAACGAGGACAATATAGAGAAGGTACTCGAAGAGATAAGACCTTACCTTGTCGGGGCAGCGGGAGGATCTCTTGAACTTGTGGGCATCGAGGAGCCTATTGTTAAAGTTCGGATCACAGGCCCAGCCGCTGGGGTCATGACAGTTCGTGTGGCTGTTACACAGAAATTGCGAGAGAAGATCCCAGCCATAGCGGCCGTTCAACTTTTGTCATAA

Protein sequence

MHAVVLNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLRIRLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS

Homology

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BLAST of Spg025887.1 vs. NCBI nr
Match: XP_022151795.1 (nifU-like protein 2, chloroplastic [Momordica charantia])

HSP 1 Score: 411.8 bits (1057), Expect = 4.1e-111
Identity = 221/235 (94.04%), Postives = 225/235 (95.74%), Query Frame = 0


Query: 1   MHAVVLNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLRIR 60
           MHAVVLNSSPYTRAPQ LETPSSSR+FK   ISR F  HVSPSRER+PLWR+SCRS RIR
Sbjct: 1   MHAVVLNSSPYTRAPQPLETPSSSRAFK---ISRPFLSHVSPSRERTPLWRKSCRSFRIR 60

Query: 61  LPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLK 120
           LP+NSRR V RAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLK
Sbjct: 61  LPTNSRRPVMRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLK 120

Query: 121 LQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPY 180
           LQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPY
Sbjct: 121 LQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPY 180

Query: 181 LVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
           LVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS
Sbjct: 181 LVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 232

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BLAST of Spg025887.1 vs. NCBI nr
Match: XP_008445979.1 (PREDICTED: nifU-like protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 379.4 bits (973), Expect = 2.2e-101
Identity = 209/237 (88.19%), Postives = 217/237 (91.56%), Query Frame = 0


Query: 1   MHAVV--LNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLR 60
           MHAVV  LN+SPYTRAPQTLE+PS SR+FKV   SR FF HVSP       WR+SCRSLR
Sbjct: 1   MHAVVWNLNTSPYTRAPQTLESPSCSRNFKV---SRFFFRHVSP-------WRKSCRSLR 60

Query: 61  IRLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120
           IRLPS+SR R+ RAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGN+VR
Sbjct: 61  IRLPSSSRTRLIRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNIVR 120

Query: 121 LKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180
           LKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIAD ETGLELNE+NIEKVLEEIR
Sbjct: 121 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADVETGLELNEENIEKVLEEIR 180

Query: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
           PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS
Sbjct: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 227

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BLAST of Spg025887.1 vs. NCBI nr
Match: KAA0034154.1 (nifU-like protein 2 [Cucumis melo var. makuwa] >TYK15765.1 nifU-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 379.4 bits (973), Expect = 2.2e-101
Identity = 209/237 (88.19%), Postives = 217/237 (91.56%), Query Frame = 0


Query: 1   MHAVV--LNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLR 60
           MHAVV  LN+SPYTRAPQTLE+PS SR+FKV   SR FF HVSP       WR+SCRSLR
Sbjct: 238 MHAVVWNLNTSPYTRAPQTLESPSCSRNFKV---SRFFFRHVSP-------WRKSCRSLR 297

Query: 61  IRLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120
           IRLPS+SR R+ RAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGN+VR
Sbjct: 298 IRLPSSSRTRLIRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNIVR 357

Query: 121 LKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180
           LKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIAD ETGLELNE+NIEKVLEEIR
Sbjct: 358 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADVETGLELNEENIEKVLEEIR 417

Query: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
           PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS
Sbjct: 418 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 464

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BLAST of Spg025887.1 vs. NCBI nr
Match: KAG6601625.1 (NifU-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032385.1 NifU-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.3 bits (965), Expect = 1.9e-100
Identity = 209/236 (88.56%), Postives = 214/236 (90.68%), Query Frame = 0


Query: 1   MHAVVLNSSPYTRAPQTLETPSSSRSFKVPF-ISRLFFCHVSPSRERSPLWRRSCRSLRI 60
           MH +VLNSSPY RAPQTL++P SS S    F IS  F  HVSPSR+RSPL RRSCRSLRI
Sbjct: 1   MHPMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI 60

Query: 61  RLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120
               NSR  V RAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL
Sbjct: 61  ----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120

Query: 121 KLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180
           KLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP
Sbjct: 121 KLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180

Query: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
           YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLLS
Sbjct: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 232

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BLAST of Spg025887.1 vs. NCBI nr
Match: XP_038877843.1 (nifU-like protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.6e-99
Identity = 206/236 (87.29%), Postives = 213/236 (90.25%), Query Frame = 0


Query: 1   MHAVV--LNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLR 60
           MHA+V  LN SPYTR PQTLE+PS SR+FK   ISR F  H+SP       WRRSCRSLR
Sbjct: 1   MHAMVLNLNPSPYTRPPQTLESPSCSRTFK---ISRFFLRHLSP-------WRRSCRSLR 60

Query: 61  IRLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120
           +RLPS SR RV RAVAT +SALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR
Sbjct: 61  VRLPSTSRTRVIRAVATPHSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120

Query: 121 LKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180
           LKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIADEETGLELNE+NIEKVLEEIR
Sbjct: 121 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEENIEKVLEEIR 180

Query: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 235
           PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL
Sbjct: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 226

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BLAST of Spg025887.1 vs. ExPASy Swiss-Prot
Match: Q93W20 (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 6.4e-75
Identity = 159/241 (65.98%), Postives = 182/241 (75.52%), Query Frame = 0


Query: 1   MHAVVLNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLRIR 60
           M  + LN +  +R P     PSSS S  +P      F  +  S+    L  R C  LR  
Sbjct: 1   MQLLTLNPAAISRTPPQAIDPSSSSSLLLP------FPQILSSQRALGLVARPCNPLRRG 60

Query: 61  LPS-------NSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEID 120
           L           R +V +AVAT +  LE+PLT ENVESVLDE+RPYL++DGGNVALHEID
Sbjct: 61  LSRFLSSRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEID 120

Query: 121 GNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKV 180
           GN+VR+KLQGACGSCPSS MTMKMGIERRLMEKIPEIVAVE + DEETGLELNE+NIEKV
Sbjct: 121 GNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKV 180

Query: 181 LEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQL 235
           LEEIRPYL+G A GSL+LV IE+PIVK+RITGPAAGVMTVRVAVTQKLREKIP+IAAVQL
Sbjct: 181 LEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 235

[Close]

BLAST of Spg025887.1 vs. ExPASy Swiss-Prot
Match: Q84LK7 (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.4e-60
Identity = 138/225 (61.33%), Postives = 166/225 (73.78%), Query Frame = 0


Query: 14  APQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLRIRLPSNSR-RRVTRA 73
           AP T  T SSS SFKV       +   S     SP  R       +  P++ R   V  A
Sbjct: 15  APST--TTSSSASFKV-----AAYAWSSCRSSSSPATR------LVAAPNHQRPPLVVGA 74

Query: 74  VATSN--SALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPS 133
           +A  +  +A++LPLTA NVESVLD+VRPYL ADGG+VALHEI GNVVRLKLQGACGSCPS
Sbjct: 75  IAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPS 134

Query: 134 SVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLE 193
           S++T+K GIERRLMEKIP++ AVEP+ D+ETGLELNE+N+EKVL EIRPYL G  GG L+
Sbjct: 135 SLITIKRGIERRLMEKIPDVAAVEPVTDKETGLELNEENVEKVLNEIRPYLAGTGGGGLQ 194

Query: 194 LVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
            + I+ PIVKVR+TGPAA V TVR+AV++KLREKIP+I  VQLLS
Sbjct: 195 FLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLLS 226

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BLAST of Spg025887.1 vs. ExPASy Swiss-Prot
Match: Q84RQ7 (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.5e-55
Identity = 116/154 (75.32%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 82  LPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIER 141
           +PLT ENVE VLDEVRP L+ADGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE 
Sbjct: 82  MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIES 141

Query: 142 RLMEKIPEIVAVEPIADEET-GLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVK 201
           RL +KIPEI++VE   + ET GLELN++NIEKVL E+RPYL G  GG LELV I+  +VK
Sbjct: 142 RLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVK 201

Query: 202 VRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 235
           VR+TGPAAGVMTVRVA+TQKLRE IP+I AVQLL
Sbjct: 202 VRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLL 235

[Close]

BLAST of Spg025887.1 vs. ExPASy Swiss-Prot
Match: Q93W77 (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.9e-20
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 78  SALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKM 137
           SA    LT +NV+ VL++VRP+LI+DGGNV +  ++  VV LKLQGAC SCPSS  TM M
Sbjct: 79  SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTM 138

Query: 138 GIERRLMEKIPEIVA-VEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEE 197
           GIER L EK  + +  +  + DEE   ++  + +   L+ +RP  +   GGS+E++ +E 
Sbjct: 139 GIERVLKEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEVLSVEG 198

Query: 198 PIVKVRITGPAAGVMTVRVAVTQKLRE 224
               V+  GP +  M ++ A+ +K ++
Sbjct: 199 EDCVVKYVGPESIGMGIQAAIKEKFKD 223

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BLAST of Spg025887.1 vs. ExPASy Swiss-Prot
Match: O32119 (Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) OX=224308 GN=yutI PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-16
Identity = 37/70 (52.86%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 87  ENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEK 146
           E V+ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIER L+E+
Sbjct: 41  EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERALLEE 100

Query: 147 IPEIVAVEPI 157
           +P +V VE +
Sbjct: 101 VPGVVEVEQV 110

[Close]

BLAST of Spg025887.1 vs. ExPASy TrEMBL
Match: A0A6J1DC70 (nifU-like protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111019691 PE=3 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.0e-111
Identity = 221/235 (94.04%), Postives = 225/235 (95.74%), Query Frame = 0


Query: 1   MHAVVLNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLRIR 60
           MHAVVLNSSPYTRAPQ LETPSSSR+FK   ISR F  HVSPSRER+PLWR+SCRS RIR
Sbjct: 1   MHAVVLNSSPYTRAPQPLETPSSSRAFK---ISRPFLSHVSPSRERTPLWRKSCRSFRIR 60

Query: 61  LPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLK 120
           LP+NSRR V RAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLK
Sbjct: 61  LPTNSRRPVMRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLK 120

Query: 121 LQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPY 180
           LQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPY
Sbjct: 121 LQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRPY 180

Query: 181 LVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
           LVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS
Sbjct: 181 LVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 232

[Close]

BLAST of Spg025887.1 vs. ExPASy TrEMBL
Match: A0A5A7SSG4 (NifU-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G002690 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.1e-101
Identity = 209/237 (88.19%), Postives = 217/237 (91.56%), Query Frame = 0


Query: 1   MHAVV--LNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLR 60
           MHAVV  LN+SPYTRAPQTLE+PS SR+FKV   SR FF HVSP       WR+SCRSLR
Sbjct: 238 MHAVVWNLNTSPYTRAPQTLESPSCSRNFKV---SRFFFRHVSP-------WRKSCRSLR 297

Query: 61  IRLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120
           IRLPS+SR R+ RAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGN+VR
Sbjct: 298 IRLPSSSRTRLIRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNIVR 357

Query: 121 LKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180
           LKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIAD ETGLELNE+NIEKVLEEIR
Sbjct: 358 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADVETGLELNEENIEKVLEEIR 417

Query: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
           PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS
Sbjct: 418 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 464

[Close]

BLAST of Spg025887.1 vs. ExPASy TrEMBL
Match: A0A1S3BEN3 (nifU-like protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488846 PE=3 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.1e-101
Identity = 209/237 (88.19%), Postives = 217/237 (91.56%), Query Frame = 0


Query: 1   MHAVV--LNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLR 60
           MHAVV  LN+SPYTRAPQTLE+PS SR+FKV   SR FF HVSP       WR+SCRSLR
Sbjct: 1   MHAVVWNLNTSPYTRAPQTLESPSCSRNFKV---SRFFFRHVSP-------WRKSCRSLR 60

Query: 61  IRLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVR 120
           IRLPS+SR R+ RAVAT NSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGN+VR
Sbjct: 61  IRLPSSSRTRLIRAVATPNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNIVR 120

Query: 121 LKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIR 180
           LKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIAD ETGLELNE+NIEKVLEEIR
Sbjct: 121 LKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADVETGLELNEENIEKVLEEIR 180

Query: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
           PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS
Sbjct: 181 PYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 227

[Close]

BLAST of Spg025887.1 vs. ExPASy TrEMBL
Match: A0A6J1GZA7 (nifU-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458860 PE=3 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.8e-100
Identity = 208/236 (88.14%), Postives = 213/236 (90.25%), Query Frame = 0


Query: 1   MHAVVLNSSPYTRAPQTLETPSSSRSFKVPF-ISRLFFCHVSPSRERSPLWRRSCRSLRI 60
           M  +VLNSSPY RAPQTL++P SS S    F IS  F  HVSPSR+RSPL RRSCRSLRI
Sbjct: 1   MQPMVLNSSPYHRAPQTLQSPPSSSSSSRAFEISSFFVRHVSPSRQRSPLCRRSCRSLRI 60

Query: 61  RLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120
               NSR  V RAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL
Sbjct: 61  ----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRL 120

Query: 121 KLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180
           KLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP
Sbjct: 121 KLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVLEEIRP 180

Query: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLLS 236
           YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLLS
Sbjct: 181 YLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLLS 232

[Close]

BLAST of Spg025887.1 vs. ExPASy TrEMBL
Match: A0A6J1KEQ7 (nifU-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493175 PE=3 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.3e-99
Identity = 209/241 (86.72%), Postives = 216/241 (89.63%), Query Frame = 0


Query: 1   MHAVVLNSSPYTRAPQTLETPS------SSRSFKVPFISRLFFCHVSPSRERSPLWRRSC 60
           MH +VLNSSPY RAPQTL++PS      SSR+FK   IS  F  HVSPSR+RS L RRSC
Sbjct: 1   MHPMVLNSSPYHRAPQTLQSPSSSSSSFSSRAFK---ISSFFVRHVSPSRQRSLLCRRSC 60

Query: 61  RSLRIRLPSNSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120
           RSLRI    NSR  V RAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG
Sbjct: 61  RSLRI----NSRTPVIRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEIDG 120

Query: 121 NVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVL 180
           NVVRLKLQGACGSCPSSV TMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVL
Sbjct: 121 NVVRLKLQGACGSCPSSVTTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKVL 180

Query: 181 EEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 236
           EEIRPYL+GAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIP+IAAVQLL
Sbjct: 181 EEIRPYLIGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLL 234

[Close]

BLAST of Spg025887.1 vs. TAIR 10
Match: AT5G49940.1 (NIFU-like protein 2 )

HSP 1 Score: 282.0 bits (720), Expect = 4.5e-76
Identity = 159/241 (65.98%), Postives = 182/241 (75.52%), Query Frame = 0


Query: 1   MHAVVLNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLRIR 60
           M  + LN +  +R P     PSSS S  +P      F  +  S+    L  R C  LR  
Sbjct: 1   MQLLTLNPAAISRTPPQAIDPSSSSSLLLP------FPQILSSQRALGLVARPCNPLRRG 60

Query: 61  LPS-------NSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEID 120
           L           R +V +AVAT +  LE+PLT ENVESVLDE+RPYL++DGGNVALHEID
Sbjct: 61  LSRFLSSRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEID 120

Query: 121 GNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKV 180
           GN+VR+KLQGACGSCPSS MTMKMGIERRLMEKIPEIVAVE + DEETGLELNE+NIEKV
Sbjct: 121 GNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKV 180

Query: 181 LEEIRPYLVGAAGGSLELVGIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQL 235
           LEEIRPYL+G A GSL+LV IE+PIVK+RITGPAAGVMTVRVAVTQKLREKIP+IAAVQL
Sbjct: 181 LEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQL 235

[Close]

BLAST of Spg025887.1 vs. TAIR 10
Match: AT4G25910.1 (NFU domain protein 3 )

HSP 1 Score: 217.6 bits (553), Expect = 1.0e-56
Identity = 116/154 (75.32%), Postives = 131/154 (85.06%), Query Frame = 0


Query: 82  LPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIER 141
           +PLT ENVE VLDEVRP L+ADGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE 
Sbjct: 82  MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIES 141

Query: 142 RLMEKIPEIVAVEPIADEET-GLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEEPIVK 201
           RL +KIPEI++VE   + ET GLELN++NIEKVL E+RPYL G  GG LELV I+  +VK
Sbjct: 142 RLRDKIPEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVK 201

Query: 202 VRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL 235
           VR+TGPAAGVMTVRVA+TQKLRE IP+I AVQLL
Sbjct: 202 VRLTGPAAGVMTVRVALTQKLRETIPSIGAVQLL 235

[Close]

BLAST of Spg025887.1 vs. TAIR 10
Match: AT5G49940.2 (NIFU-like protein 2 )

HSP 1 Score: 186.4 bits (472), Expect = 2.6e-47
Identity = 107/180 (59.44%), Postives = 124/180 (68.89%), Query Frame = 0


Query: 1   MHAVVLNSSPYTRAPQTLETPSSSRSFKVPFISRLFFCHVSPSRERSPLWRRSCRSLRIR 60
           M  + LN +  +R P     PSSS S  +P      F  +  S+    L  R C  LR  
Sbjct: 1   MQLLTLNPAAISRTPPQAIDPSSSSSLLLP------FPQILSSQRALGLVARPCNPLRRG 60

Query: 61  LPS-------NSRRRVTRAVATSNSALELPLTAENVESVLDEVRPYLIADGGNVALHEID 120
           L           R +V +AVAT +  LE+PLT ENVESVLDE+RPYL++DGGNVALHEID
Sbjct: 61  LSRFLSSRQLFRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEID 120

Query: 121 GNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPIADEETGLELNEDNIEKV 174
           GN+VR+KLQGACGSCPSS MTMKMGIERRLMEKIPEIVAVE + DEETGLELNE+NIEKV
Sbjct: 121 GNIVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETGLELNEENIEKV 174

[Close]

BLAST of Spg025887.1 vs. TAIR 10
Match: AT4G01940.1 (NFU domain protein 1 )

HSP 1 Score: 99.4 bits (246), Expect = 4.2e-21
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = 0


Query: 78  SALELPLTAENVESVLDEVRPYLIADGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKM 137
           SA    LT +NV+ VL++VRP+LI+DGGNV +  ++  VV LKLQGAC SCPSS  TM M
Sbjct: 79  SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTM 138

Query: 138 GIERRLMEKIPEIVA-VEPIADEETGLELNEDNIEKVLEEIRPYLVGAAGGSLELVGIEE 197
           GIER L EK  + +  +  + DEE   ++  + +   L+ +RP  +   GGS+E++ +E 
Sbjct: 139 GIERVLKEKFGDALKDIRQVFDEEV-KQITVEAVNAHLDILRP-AIKNYGGSVEVLSVEG 198

Query: 198 PIVKVRITGPAAGVMTVRVAVTQKLRE 224
               V+  GP +  M ++ A+ +K ++
Sbjct: 199 EDCVVKYVGPESIGMGIQAAIKEKFKD 223

[Close]

BLAST of Spg025887.1 vs. TAIR 10
Match: AT3G20970.1 (NFU domain protein 4 )

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-08
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 85  TAENVESVLD-EVRPYLIADGGNVALHEID--GNVVRLKLQGACGSCPSSVMTMKMGIER 144
           T   ++ +L+  +RP +  DGG++     D    +V+L++QGAC  CPSS +T+K GIE 
Sbjct: 192 TVAMIKELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIEN 251

Query: 145 RLMEKIPEIVAVEPIADEE 161
            LM  + E+  VE   D E
Sbjct: 252 MLMHYVSEVKGVEQEFDGE 270

The following BLAST results are available for this feature:

BLAST of Spg025887.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151795.1	4.1e-111	94.04	nifU-like protein 2, chloroplastic [Momordica charantia]	[more]
XP_008445979.1	2.2e-101	88.19	PREDICTED: nifU-like protein 2, chloroplastic [Cucumis melo]	[more]
KAA0034154.1	2.2e-101	88.19	nifU-like protein 2 [Cucumis melo var. makuwa] >TYK15765.1 nifU-like protein 2 [...	[more]
KAG6601625.1	1.9e-100	88.56	NifU-like protein 2, chloroplastic, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_038877843.1	1.6e-99	87.29	nifU-like protein 2, chloroplastic [Benincasa hispida]	[more]

BLAST of Spg025887.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93W20	6.4e-75	65.98	NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU2 PE=1...	[more]
Q84LK7	4.4e-60	61.33	NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=N...	[more]
Q84RQ7	1.5e-55	75.32	NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU3 PE=2...	[more]
Q93W77	5.9e-20	40.14	NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=NIFU1 PE=1...	[more]
O32119	5.1e-16	52.86	Putative nitrogen fixation protein YutI OS=Bacillus subtilis (strain 168) OX=224...	[more]

BLAST of Spg025887.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC70	2.0e-111	94.04	nifU-like protein 2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11101969...	[more]
A0A5A7SSG4	1.1e-101	88.19	NifU-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G0...	[more]
A0A1S3BEN3	1.1e-101	88.19	nifU-like protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488846 PE=3 ...	[more]
A0A6J1GZA7	7.8e-100	88.14	nifU-like protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458860...	[more]
A0A6J1KEQ7	1.3e-99	86.72	nifU-like protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493175 P...	[more]

BLAST of Spg025887.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49940.1	4.5e-76	65.98	NIFU-like protein 2	[more]
AT4G25910.1	1.0e-56	75.32	NFU domain protein 3	[more]
AT5G49940.2	2.6e-47	59.44	NIFU-like protein 2	[more]
AT4G01940.1	4.2e-21	40.14	NFU domain protein 1	[more]
AT3G20970.1	6.9e-08	37.97	NFU domain protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	PFAM	PF01106	NifU	coord: 170..232 e-value: 3.1E-13 score: 49.7 coord: 89..154 e-value: 7.3E-27 score: 93.3
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	3.30.300.130		coord: 164..235 e-value: 6.1E-22 score: 79.6
IPR034904	Fe-S cluster assembly domain superfamily	GENE3D	3.30.300.130		coord: 80..163 e-value: 3.7E-34 score: 118.6
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	117916	Fe-S cluster assembly (FSCA) domain-like	coord: 86..160
IPR034904	Fe-S cluster assembly domain superfamily	SUPERFAMILY	117916	Fe-S cluster assembly (FSCA) domain-like	coord: 164..233
None	No IPR available	PANTHER	PTHR11178:SF39	FIXATION PROTEIN, PUTATIVE, EXPRESSED-RELATED	coord: 10..234
None	No IPR available	PANTHER	PTHR11178	IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED	coord: 10..234

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg025887	Spg025887	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg025887.1-cds	Spg025887.1-cds-scaffold7:171408..171612	CDS
Spg025887.1-cds	Spg025887.1-cds-scaffold7:171793..172103	CDS
Spg025887.1-cds	Spg025887.1-cds-scaffold7:173055..173246	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg025887.1	Spg025887.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0097428	protein maturation by iron-sulfur cluster transfer
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding