Spg025824.1 (mRNA) Sponge gourd (cylindrica) v1
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Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATCCGGTTCGTTCAATCTGGAGGGAAAAAGAAAAAGAAAAGAGAAAGAATTAGAAACTAAAAACTCTTCAAAGCATTGCTCTTCCACACAGAACACAACGTCTTTGGCGGCGATCGGCAGTTTTTTCATGGAGAGCGGCGGCAAAGGCAGAGAGGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCGCCACCGTCCTCCGCTTCTTCTCTTCCCAAGGTTTCTCTCTCTCTCTCTCTCTCTCTCTCCAGACATTTTCTTGTAACCGCAGGAATTTGATTTTGTTCTTGTTTTTGATACGTCGTGGTTAGGAGCAACCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGTCAAACTACAAGGCAAGTTTGCATTTACATTATGTTATCTGGTTTCTAATTGTCTCTAATATCGAAACTTGAGTGCTCAGCATCATGGTTGCTGAATCCATTATTTTAATTAGTAAGTGAGAATTTAACCTGTTTCCTATTTGTGTATTCAGTGATAACGATCAACTTCGTTACTGTTATTATTATTTTGTGTTGTCTGATGAAAAGTGGTATGGAGGACCAGAAATTAAGAATGCAGCCACTCTTACGGATTTGAGAAATGACTGGAAGAGTGATAAGCGGAAATTAAATTTATCTTCCCGGAATGTCATTCTGTTTATTACTTGAGGTTCTACCGATTTAGAATAGGGGGAAATCTTTTGAACTGAATATTCTATGGTCAATAAAATCACATCATCTTATGCCACTATCGAGAACTTAAGCAGTCATCTCGTCATTCTGGGGTAATCATTCTTAGAATCGCAAGGAAAGGAAACAAACTTTGATGTATTGGCTCATGATTTTAAATGATTGATCCCGTTTATCGGCATTTTCTTCCCCCTTCTATATACGAGCTTGCTGTCAAAGAATTATTATTAAATTTTATTTTATACTGTTCAACTTGCCTTCTACATGCTGGTTCAAGTTGATGCAAGTATGTAATCATATACAGCTCACGCTCTAACAATTGTTAGTTTCATTATTTTTCATACAGGCATACATCGCCATTTTGTCCTCTTCGGGTTGATGGAATTTCTGCGAAGAAGGTTTTCTCTTCCCCTGTATCATCTTGTTTTGTATATTTTACTGAGCTTCAACGATATTCTGTTGTATAATACTCTATTGGTTTACTATCTTCTTGTTGCAGCTTTGATCGTCAGTTCTCTTCCGATGAGATTCTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGGTAAAAAGAAATCTCTAATGCCCATTTTTCTTTTTCCTGTTTTTTTTCTTCTGGCTTCATTTTATTTGAAAAGGTGAATAATTTAAATAGCATAAATATATATAAGCTAGAAAATTCACTTTTCTTGCATTCAAGCTTTTTGAAAGAAAAATTTACCGATTCCTTATAATCATATTCATCATTCTGGAAGGCTTTGGGTACCTACTAAGTAGAGTTTTGCTCAGATAGAGATCATATTCACTTTCTTTCTAAAGAAGATATTGGTTACAGCTTGATTATCAAATATGTCTTGAAGTTTTAGACGTTGACATATACAAATATGCTTTTCTGAAGAGTTATAATTAAATAACATGGGGGTGAGTCTCATTTATTTTTTACTCCTTAAGTCATCTTTTCTGGTCTTCCTTTTGACAACTGATGAGATATTTGTGCTAATATTGCTTTCCTCGCACTGTTTTTCAGAAGCCAGATGATGAGGAGATGGAAATACTGAATCACGAGGAAGATTTTTGCTTACCACAAACCTTCTTTGTCAAAGAAGAATCTTAAGGGAGATTGTTCATATGGATTAGTACCTTAGCACTGCCTGGTATACGATAGTTTTATTAATTTTTATCTACGTCCATTCCCTTTTTGTTTTGTAAATGTCAATATAGAATCTTTTGCTTGTTGGTATAATTCAATATTTCCCTTTACAAGGATAAGTTATTTAGTGGCCATACACGGTGATCATACTCAATTTAGCTAAGGTATTCATGCCGATGCTAGATTTTCTCTGTTCTGCCTGCCATAATTCTACTAACATACCCTCCAATTGGGGAGTTGACCCTCAATACGTAGCACCTACACTTTCGTATGTCAAATAAATCCTTTTAGTTCCTACCGTTCAATAGAGAATTGGAAGGAAAATCTTGAAGGATGAGAGTTGATTGGTGACAATCACTTACGTTGTGACTGAAGACATATTTGGGAGTGCTTTTGGAATAACCAGACTCTCAATTTTGTTTAGTGGAGTAGGAAGTCATTTCCAACAAGGAGGCTGCCTAAGAAATCGACCGTCAAAGTAACCTGAGCGAGAGGAGAACAGAACAGCAACATGTGCATTAATGCATGAAGACAAACAACAAATGCGTAGAAAGGAAGTAGGCAAAGGACCATTTTAATCCTATGATTCTCCCTTTACTGAATGCAAGTCACATCTCCAACAGAGAAAATAGATGAACGATCTGAACAAATGTAATCATTTAAAATATTTTCTCTTGACGGTAATTGGCATGTATAATTAGAGGTTTGAATTTCCTCACATCCAAATGTTGTTGAACTAAAAAAAAAAAAAAAGCTTTCTCATGATTTTATTGTTTAGTATTATCTATGATGAACTTTGCGTTATACTTGTAAGTTTTTAATCTACACACTCTCACAATTATCA ATGGAGAGCGGCGGCAAAGGCAGAGAGGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCGCCACCGTCCTCCGCTTCTTCTCTTCCCAAGGAGCAACCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGTCAAACTACAAGGCAAGTTTGCATTTACATTATGCATACATCGCCATTTTGTCCTCTTCGGGTTGATGGAATTTCTGCGAAGAAGCTTTGATCGTCAGTTCTCTTCCGATGAGATTCTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGAAGCCAGATGATGAGGAGATGGAAATACTGAATCACGAGGAAGATTTTTGCTTACCACAAACCTTCTTTGTCAAAGAAGAATCTTAA ATGGAGAGCGGCGGCAAAGGCAGAGAGGAAGAACAAGACGGCATGTCTGTACACTCTCCATGCAAAGCGCCACCGTCCTCCGCTTCTTCTCTTCCCAAGGAGCAACCACAGATTGAATTGGAACTCAAACTCTTGCAAGCTCTTGAAATTTATCCACTAGTCAAACTACAAGGCAAGTTTGCATTTACATTATGCATACATCGCCATTTTGTCCTCTTCGGGTTGATGGAATTTCTGCGAAGAAGCTTTGATCGTCAGTTCTCTTCCGATGAGATTCTACAGTTGTTGGATCGGTTCTATAACCTGGAAATGCTGAAGCCAGATGATGAGGAGATGGAAATACTGAATCACGAGGAAGATTTTTGCTTACCACAAACCTTCTTTGTCAAAGAAGAATCTTAA MESGGKGREEEQDGMSVHSPCKAPPSSASSLPKEQPQIELELKLLQALEIYPLVKLQGKFAFTLCIHRHFVLFGLMEFLRRSFDRQFSSDEILQLLDRFYNLEMLKPDDEEMEILNHEEDFCLPQTFFVKEES Homology
BLAST of Spg025824.1 vs. NCBI nr
Match: XP_038893367.1 (uncharacterized protein LOC120082183 [Benincasa hispida]) HSP 1 Score: 240.7 bits (613), Expect = 7.0e-60 Identity = 125/133 (93.98%), Postives = 126/133 (94.74%), Query Frame = 0
BLAST of Spg025824.1 vs. NCBI nr
Match: XP_008446430.1 (PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]) HSP 1 Score: 239.2 bits (609), Expect = 2.0e-59 Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = 0
BLAST of Spg025824.1 vs. NCBI nr
Match: XP_004135149.1 (uncharacterized protein LOC101212766 isoform X2 [Cucumis sativus] >KGN51973.1 hypothetical protein Csa_008415 [Cucumis sativus]) HSP 1 Score: 237.3 bits (604), Expect = 7.8e-59 Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 0
BLAST of Spg025824.1 vs. NCBI nr
Match: XP_022945110.1 (uncharacterized protein LOC111449449 [Cucurbita moschata] >XP_023541772.1 uncharacterized protein LOC111801826 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 236.5 bits (602), Expect = 1.3e-58 Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 0
BLAST of Spg025824.1 vs. NCBI nr
Match: XP_022968533.1 (uncharacterized protein LOC111467738 [Cucurbita maxima]) HSP 1 Score: 235.7 bits (600), Expect = 2.3e-58 Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 0
BLAST of Spg025824.1 vs. ExPASy TrEMBL
Match: A0A1S3BFV8 (uncharacterized protein LOC103489178 OS=Cucumis melo OX=3656 GN=LOC103489178 PE=3 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 9.9e-60 Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = 0
BLAST of Spg025824.1 vs. ExPASy TrEMBL
Match: A0A0A0KQU2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G606640 PE=3 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 3.8e-59 Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 0
BLAST of Spg025824.1 vs. ExPASy TrEMBL
Match: A0A6J1FZZ7 (uncharacterized protein LOC111449449 OS=Cucurbita moschata OX=3662 GN=LOC111449449 PE=3 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 6.4e-59 Identity = 123/133 (92.48%), Postives = 125/133 (93.98%), Query Frame = 0
BLAST of Spg025824.1 vs. ExPASy TrEMBL
Match: A0A6J1HYA5 (uncharacterized protein LOC111467738 OS=Cucurbita maxima OX=3661 GN=LOC111467738 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58 Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 0
BLAST of Spg025824.1 vs. ExPASy TrEMBL
Match: A0A6J1J1E0 (uncharacterized protein LOC111482526 OS=Cucurbita maxima OX=3661 GN=LOC111482526 PE=3 SV=1) HSP 1 Score: 233.8 bits (595), Expect = 4.2e-58 Identity = 122/133 (91.73%), Postives = 124/133 (93.23%), Query Frame = 0
BLAST of Spg025824.1 vs. TAIR 10
Match: AT1G26470.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has 60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). ) HSP 1 Score: 186.0 bits (471), Expect = 1.9e-47 Identity = 96/129 (74.42%), Postives = 112/129 (86.82%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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