Spg024236.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg024236.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold4: 20669300 .. 20671006 (+)
Sequence length	1338
RNA-Seq Expression	Spg024236.1
Synteny	Spg024236.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAACGAGAGGAAGAAAGGAGAGAGACAATGAGGAAGAAGAGGTGTCGGTCACACCAGAAGCACCGAAAACAAAAGCAAAGAAAAAGAAAACACCGGAGGAAAAGGAAGCTAAAAGAAGGAAAAGGCAACAGAGGGCTGAGGATCAAGAAATTGCACACAAGGTAGTAGAGGATATTGCTGTCGAGGTAGTTGAAGAAGGTAATTCGAGGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGAGGATACGCAAGAGGTTCAAGAAGAACAGACAGAGGAGGCGCAAGAGGATGCGCAAGAAAAGCAGACAGAGGATGCGCAAGAAGGACAGACAGAGGTTGTGCAGGAAAAAGGCAATGAGCAGGAGGTGCAAGGGCAAGAGGCTCGCGTTGAGGTTATTATGCCGGAAGTGCCACGTCGTCGTCGTCGGAAGCAGAAGGCCGGCCGAGTCAAGGTGGTCCGAACCGATACTCCTTCACCACCGACAACTGATTCTGAGAAAGAAAATGCAGAGCGAGAAGAACAGGAAAAAAAGGAGGCCGAAGACAAAGCAAGAGAAGAAGCAGAAAAGAAAGCAGGGAAGAGATTTTGGCAAAGCATCAAGAAGACCAGGGCAAAGGAATTGTTGAAGCATCAGATGATCCAGAAGAGGAAACAGAAAGAATACCGTTCATTCGCTTCATCAATGAACTTGCCCGAGCAAAATATAGGGAGATGCTGAAAAGAGATTTCTTATTCGAGAGAGGTTTTAGTGAAGATTTACCACATTTCTTAAGGGTCGGGATCGCAAATCACGGCTGGAGTCAATTCTGTGCAAAACCAGATCCGTTGAATTCGAACATCGTTCGAGAATTTTATGCGAATATTGATAATCCAGAAGAATTTCAAGCCATGGTCCGAGGGGTGGCTGTTGATTGGAGCCCAGGAGCTATCAATTCATTATTCAACCTCCAGGACTTCCCACACACAGGCTTCAATGAGATGGTGGTGGCACCATCGAGTGGTCAGTTAAATGCGGTTTGTCCGAGAGGTTGGCATCGAGGGGGCTTAGTGGAGATTATCGAAGACGGAGAAGCGCACATTTCAAACTTCCTATCTGAAGAGTGAGGCCAATACATGGTTGGGCTTCATTAAGTTGCGCCTGCTTCCGACTACTCATGATTCAACAGTGTCTCGCGACCGAGTGCTTTTGGTATTCACAATTCTTCGATCTTTAAGTATTAATGTTGGAAAAATCATTTCGAATGAAATCTATAATTGCTAGTGCAAAAAGGTGGGGAAGCTGTTTTTCCCGAACACAATCACAATGTTATGCAGCAGGGCAGGAGTGCCCACGGTTCCAGAGGATGTAATTTTTCTTGACAAGGGGATAATAGATACGCCTAATTTGGCTCTGCTTCAGCGCACGCAGGAGGCACGCCAGGGTGGGCTAGTGCGTGGAATCCATCAAAACCTAGAGCAACTGGCACTGTCGGGCAGTAGGCAAGAGTTTGTTGAGAGGCAAGCTCAAACCTATTGGACCTATGCTAAGAGGAGAGATGACACACTTCGGAGGGCCTTGCAATCCAATTTTTCCAAACCGTATCAGGCCTTCCCTATGTTCCCAGATGATTTATTTAACCCCTGGATTCCGCCACCGCCAGTGGAAAGGGAAGAAGAGGACGATGAAGAGCAGGGTCAGGAAGATTGA

mRNA sequence

ATGGCGAAAACGAGAGGAAGAAAGGAGAGAGACAATGAGGAAGAAGAGGTGTCGGTCACACCAGAAGCACCGAAAACAAAAGCAAAGAAAAAGAAAACACCGGAGGAAAAGGAAGCTAAAAGAAGGAAAAGGCAACAGAGGGCTGAGGATCAAGAAATTGCACACAAGGTAGTAGAGGATATTGCTGTCGAGGTAGTTGAAGAAGGTAATTCGAGGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGAGGATACGCAAGAGGTTCAAGAAGAACAGACAGAGGAGGCGCAAGAGGATGCGCAAGAAAAGCAGACAGAGGATGCGCAAGAAGGACAGACAGAGGTTGTGCAGGAAAAAGGCAATGAGCAGGAGGTGCAAGGGCAAGAGGCTCGCGTTGAGGTTATTATGCCGGAAGTGCCACGTCGTCGTCGTCGGAAGCAGAAGGCCGGCCGAGTCAAGGTGGTCCGAACCGATACTCCTTCACCACCGACAACTGATTCTGAGAAAGAAAATGCAGAGCGAGAAGAACAGGAAAAAAAGGAGGCCGAAGACAAAGCAAGAGAAGAAGCAGAAAAGAAAGCAGGGAAGAGATTTTGGCAAAGCATCAAGAAGACCAGGGCAAAGGAATTGTTGAAGCATCAGATGATCCAGAAGAGGAAACAGAAAGAATACCATCCGTTGAATTCGAACATCGTTCGAGAATTTTATGCGAATATTGATAATCCAGAAGAATTTCAAGCCATGGTCCGAGGGGTGGCTGTTGATTGGAGCCCAGGAGCTATCAATTCATTATTCAACCTCCAGGACTTCCCACACACAGGCTTCAATGAGATGGTGGTGGCACCATCGAGTGGTCAGTTAAATGCGGTTTGTCCGAGAGGTTGGCATCGAGGGGGCTTAGTGGAGATTATCGAAGACGGAGAAGCGCACATTTCAAACTTCCTATCTGAAGACAGGGCAGGAGTGCCCACGGTTCCAGAGGATGTAATTTTTCTTGACAAGGGGATAATAGATACGCCTAATTTGGCTCTGCTTCAGCGCACGCAGGAGGCACGCCAGGGTGGGCTAGTGCGTGGAATCCATCAAAACCTAGAGCAACTGGCACTGTCGGGCAGTAGGCAAGAGTTTGTTGAGAGGCAAGCTCAAACCTATTGGACCTATGCTAAGAGGAGAGATGACACACTTCGGAGGGCCTTGCAATCCAATTTTTCCAAACCGTATCAGGCCTTCCCTATGTTCCCAGATGATTTATTTAACCCCTGGATTCCGCCACCGCCAGTGGAAAGGGAAGAAGAGGACGATGAAGAGCAGGGTCAGGAAGATTGA

Coding sequence (CDS)

ATGGCGAAAACGAGAGGAAGAAAGGAGAGAGACAATGAGGAAGAAGAGGTGTCGGTCACACCAGAAGCACCGAAAACAAAAGCAAAGAAAAAGAAAACACCGGAGGAAAAGGAAGCTAAAAGAAGGAAAAGGCAACAGAGGGCTGAGGATCAAGAAATTGCACACAAGGTAGTAGAGGATATTGCTGTCGAGGTAGTTGAAGAAGGTAATTCGAGGGAACCTGAAGGACAAAACCCAGAGCAGACTGACCCGATAGTTGAGGATACGCAAGAGGTTCAAGAAGAACAGACAGAGGAGGCGCAAGAGGATGCGCAAGAAAAGCAGACAGAGGATGCGCAAGAAGGACAGACAGAGGTTGTGCAGGAAAAAGGCAATGAGCAGGAGGTGCAAGGGCAAGAGGCTCGCGTTGAGGTTATTATGCCGGAAGTGCCACGTCGTCGTCGTCGGAAGCAGAAGGCCGGCCGAGTCAAGGTGGTCCGAACCGATACTCCTTCACCACCGACAACTGATTCTGAGAAAGAAAATGCAGAGCGAGAAGAACAGGAAAAAAAGGAGGCCGAAGACAAAGCAAGAGAAGAAGCAGAAAAGAAAGCAGGGAAGAGATTTTGGCAAAGCATCAAGAAGACCAGGGCAAAGGAATTGTTGAAGCATCAGATGATCCAGAAGAGGAAACAGAAAGAATACCATCCGTTGAATTCGAACATCGTTCGAGAATTTTATGCGAATATTGATAATCCAGAAGAATTTCAAGCCATGGTCCGAGGGGTGGCTGTTGATTGGAGCCCAGGAGCTATCAATTCATTATTCAACCTCCAGGACTTCCCACACACAGGCTTCAATGAGATGGTGGTGGCACCATCGAGTGGTCAGTTAAATGCGGTTTGTCCGAGAGGTTGGCATCGAGGGGGCTTAGTGGAGATTATCGAAGACGGAGAAGCGCACATTTCAAACTTCCTATCTGAAGACAGGGCAGGAGTGCCCACGGTTCCAGAGGATGTAATTTTTCTTGACAAGGGGATAATAGATACGCCTAATTTGGCTCTGCTTCAGCGCACGCAGGAGGCACGCCAGGGTGGGCTAGTGCGTGGAATCCATCAAAACCTAGAGCAACTGGCACTGTCGGGCAGTAGGCAAGAGTTTGTTGAGAGGCAAGCTCAAACCTATTGGACCTATGCTAAGAGGAGAGATGACACACTTCGGAGGGCCTTGCAATCCAATTTTTCCAAACCGTATCAGGCCTTCCCTATGTTCCCAGATGATTTATTTAACCCCTGGATTCCGCCACCGCCAGTGGAAAGGGAAGAAGAGGACGATGAAGAGCAGGGTCAGGAAGATTGA

Protein sequence

MAKTRGRKERDNEEEEVSVTPEAPKTKAKKKKTPEEKEAKRRKRQQRAEDQEIAHKVVEDIAVEVVEEGNSREPEGQNPEQTDPIVEDTQEVQEEQTEEAQEDAQEKQTEDAQEGQTEVVQEKGNEQEVQGQEARVEVIMPEVPRRRRRKQKAGRVKVVRTDTPSPPTTDSEKENAEREEQEKKEAEDKAREEAEKKAGKRFWQSIKKTRAKELLKHQMIQKRKQKEYHPLNSNIVREFYANIDNPEEFQAMVRGVAVDWSPGAINSLFNLQDFPHTGFNEMVVAPSSGQLNAVCPRGWHRGGLVEIIEDGEAHISNFLSEDRAGVPTVPEDVIFLDKGIIDTPNLALLQRTQEARQGGLVRGIHQNLEQLALSGSRQEFVERQAQTYWTYAKRRDDTLRRALQSNFSKPYQAFPMFPDDLFNPWIPPPPVEREEEDDEEQGQED

Homology

The following BLAST results are available for this feature:

BLAST of Spg024236.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg024236.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg024236.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg024236.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 169..197
None	No IPR available	COILS	Coil	Coil	coord: 90..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 418..445
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg024236	Spg024236	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg024236.1-cds	Spg024236.1-cds-scaffold4:20669300..20669984	CDS
Spg024236.1-cds	Spg024236.1-cds-scaffold4:20670140..20670419	CDS
Spg024236.1-cds	Spg024236.1-cds-scaffold4:20670634..20671006	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg024236.1	Spg024236.1-protein	polypeptide