Spg024181.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg024181.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionNucleolar protein 58-like
Locationscaffold4: 19785531 .. 19787997 (-)
Sequence length681
RNA-Seq ExpressionSpg024181.1
SyntenySpg024181.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAACAACACATGACGCCACAATATCTCAAGAACGTGTCATGTTGTTGTACAACATGCATAAGGGGTTGGATCTGAACCTTGGACGAATCATCTGGATGGAGATCCTTTCTTGTGGGCACAAGAATGTGAGGAGGTTGTTCTTCCCAACCTTGATCACTAAGATATGCAGGCTTGCAGGAATAGAGCCGGAGGAGAAAGAGGAAAAACAGAGACAGAATACCAACCTCTTTAAATCCGTGAAATTGGTTGAATCCTCTTGTTGTTTTTCTTCTCCAATCAATCACGAACCACCACTGGATCTTCTTTGCTATTCTCAAGCCTTTGGAACGGATTGTGGGATCCTCAAGTGATGAAATTTGAAGGGAAAAGCTTGAAGAACAAGTTATGGAGATGAGTTTTGGTGTGTATGAATTTTGGCAGCAGTTCTCTAAGATTCAAACATGATTTCTTCAGCAATCTTCTTCCCTTTTATAGAGGGAAGAAAGCTGAATAGTTAAACCATGGATTGACACCAAATGACCCAACTCAAAGTGGGTAATTTGGTGGTTAATTTGAGGGGAGTGCATGAGTTTGGTCACCATGCACTCCACCTCCTAAAAATCAATTTAATTTTGAATTTCCTAATTCAAAATTATCTTGATTTTTAGTATTTAATTATTATATAATAATAATATGAAAAATTCCATTTTTCAATTTTCAATTTTTACCATCAATCTAAAATAATTATTAATTAAATAATAATTAATTTATTTATTTTTTAAAAATTATTTTGAAAAATTAATTTAAAATAATTATTAATTAAATAATGATTAATTAATTTAATATCTAATATTCAATTAATATTTTACCATCAATCCTAAACATTTCAAAACTGTTATTTTTCCAACACGAATCCCTATTCATGTTCTCGGTATTTAAATCATATTTAAATATTAAATATCACACAACCCGGTTTTCACAAAACTCGACGTATCGATAATGTCAACCACCTCTATTCATTTCCCTAAACTGAATTTGAATTAATTCATATTCTATCCATCATATTGTTCCAAAGGTTAGTCTCGAGCTAGCAAGGGGACCTAATGGACCTACAGATCATGGGCTCCAACGGTACGAGGTTTAACCGGGTAAACCCTTTTCACCTAGTTAACCAACATCTGTTAACTATCGAGACACTCCACTATAGCCTAGTAGTTGAACTCCCCTCACTGTAGATATATTTCCGTCCACTCGATATAACCATGATTAGTAAGTCGATCCTTCACAGGTCGTTCATTACTATAACTAGGTCAAATGTCTGTTTTACCCTTATAGTACATTTTAGTTCCTTAAGTCCATTGGTCCTCTATTGAACAATTTGTTTATGGTCCAACCACTAAACAAAGTCCCTCTCAAGCCAACGAGAGGGTGGGGCCCCTTTGTTCAAGCTTTGGAGTCACCACTGAAGGGAACAACCTCTCTACTATCCTTGAATTGGGTAGGAGTGAATTTCGTCTTGCTACACTATGTCCCTAGCTATCCATCTAGTCTTATCCCCAAAATGGTAGGTTTATTGAATGGCACTAATGGACCACTCTCACCCATGCAGATCAAAGGATAATCCTGAACGAACAAGATTTCATAGCAAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCTTAAAATAGTCAGTCTTAACAGTAAACGGCGTTATAAGGTAAGAGTGACTTATTTCTCGGTCTTGTGTCTTGTGTAAACATCTTTTACACAAGATGCCCCTACTCACATGTCTTTACATGAACGATCAAGGATCACGTCGTTTACTTTATTCGCAGAGTAGGCCGCATCCATAGTGTTACCAGGATAAGGTACCCAGCCATATCCATTTACTATAGACCATTTAGGTTATATACTCAAACTTGATCCCTGTCTATATCTATGATATAGTTCGAGTATTCCATATTATAACCATGGATGTTTCTATTGGATTTAAGATATAAAATAAACAATTTCACTAAATAACGTCTTTATTATAAAAGGATAACAAAACTTGAGTTTTAGGACATAAACCCCAACAGAAACTCATAGTCAATGCCAAGCAAAAGGTGACTTCACCTGAAAAGAAGGCTCAAGCAACTTCCCCTACAGCTCAACAAGAAAAACCTCCTAAAGAAGCCACATAGACAACAGGCGTTGCGATCGCAAAATTGTCATAGAATATACCAGATGCGGTCGCAAGACAACTGCAATCTCCAGTCCCTAAAAAACAACCTCAAAGTGATTTGGTGGTTTTAAGGAGAAACTTGGAGAAGATGAGGAACTAGTTTAAAGAGTACCTGACCTATACTAAAGAGCGAGATGGTGTTGTCAGGTGCATTTTGGAGAATGTGGTGGATGATCTGGACGAATACCTTCCACCATTCCCCGAGATAAATTGGAATCCAACACCAGGCGATGGAGCAGGCCCTTCTAATGCCTAA

mRNA sequence

ATGCCAACAACACATGACGCCACAATATCTCAAGAACGTGTCATGTTGTTGTACAACATGCATAAGGGGTTGGATCTGAACCTTGGACGAATCATCTGGATGGAGATCCTTTCTTGTGGGCACAAGAATGTGAGGAGGTTGTTCTTCCCAACCTTGATCACTAAGATATGCAGGCTTGCAGGAATAGAGCCGGAGGAGAAAGAGGAAAAACAGAGACAGAATACCAACCTCTTTAAATCCGTGAAATTGGTTGAATCCTCTTGTTGTTTTTCTTCTCCAATCAATCACGAACCACCACTGGATCTTCTTTGCTATTCTCAAGCCTTTGGAACGGATTGTGGGATCCTCAATCTCGAGCTAGCAAGGGGACCTAATGGACCTACAGATCATGGGCTCCAACGATCAAAGGATAATCCTGAACGAACAAGATTTCATAGCAAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCTTAAAATAGTCAGTCTTAACAGTAAACGGCGTTATAAGGATCACGTCGTTTACTTTATTCGCAGAGTAGGCCGCATCCATAGTGTTACCAGGATAAGGTGCATTTTGGAGAATGTGGTGGATGATCTGGACGAATACCTTCCACCATTCCCCGAGATAAATTGGAATCCAACACCAGGCGATGGAGCAGGCCCTTCTAATGCCTAA

Coding sequence (CDS)

ATGCCAACAACACATGACGCCACAATATCTCAAGAACGTGTCATGTTGTTGTACAACATGCATAAGGGGTTGGATCTGAACCTTGGACGAATCATCTGGATGGAGATCCTTTCTTGTGGGCACAAGAATGTGAGGAGGTTGTTCTTCCCAACCTTGATCACTAAGATATGCAGGCTTGCAGGAATAGAGCCGGAGGAGAAAGAGGAAAAACAGAGACAGAATACCAACCTCTTTAAATCCGTGAAATTGGTTGAATCCTCTTGTTGTTTTTCTTCTCCAATCAATCACGAACCACCACTGGATCTTCTTTGCTATTCTCAAGCCTTTGGAACGGATTGTGGGATCCTCAATCTCGAGCTAGCAAGGGGACCTAATGGACCTACAGATCATGGGCTCCAACGATCAAAGGATAATCCTGAACGAACAAGATTTCATAGCAAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCGCTTAAAATAGTCAGTCTTAACAGTAAACGGCGTTATAAGGATCACGTCGTTTACTTTATTCGCAGAGTAGGCCGCATCCATAGTGTTACCAGGATAAGGTGCATTTTGGAGAATGTGGTGGATGATCTGGACGAATACCTTCCACCATTCCCCGAGATAAATTGGAATCCAACACCAGGCGATGGAGCAGGCCCTTCTAATGCCTAA

Protein sequence

MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLAGIEPEEKEEKQRQNTNLFKSVKLVESSCCFSSPINHEPPLDLLCYSQAFGTDCGILNLELARGPNGPTDHGLQRSKDNPERTRFHSKLRIKIELPRSSLKIVSLNSKRRYKDHVVYFIRRVGRIHSVTRIRCILENVVDDLDEYLPPFPEINWNPTPGDGAGPSNA
Homology
[Close]
BLAST of Spg024181.1 vs. NCBI nr
Match: PON44141.1 (hypothetical protein PanWU01x14_268850 [Parasponia andersonii])

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-08
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PTTH   +S+ERV+LLY+M  G  +N+GR+I  EI +C  +  R LFFP+LIT++CR A
Sbjct: 134 LPTTHGKIVSKERVLLLYSMLTGKSINVGRMIHREICACAARKSRALFFPSLITRMCRNA 193

[Close]
BLAST of Spg024181.1 vs. NCBI nr
Match: XP_015385578.1 (drebrin-like [Citrus sinensis])

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-07
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 0 

Query: 1  MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKN--VRRLFFPTLITKICR 60
          MPTTH  T+SQER+++LY + +GL +++G II  EI  C  KN     L FP+LIT IC 
Sbjct: 1  MPTTHTTTVSQERLVMLYVIVRGLPIDVGSIIEKEIRDCAMKNHKATALLFPSLITSICV 60

Query: 61 LAGIEPEEKEE 70
          ++G+  + K+E
Sbjct: 61 VSGVRLDAKDE 71

[Close]
BLAST of Spg024181.1 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-07
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PTTH  T+S++R++LLY+M  G  +N+GR+I  EI +C  +    LFFP+LIT++CR A
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  GIEPEEKEEK 71
                  EEK
Sbjct: 117 RAPFLVNEEK 126

[Close]
BLAST of Spg024181.1 vs. NCBI nr
Match: KAF4375842.1 (hypothetical protein G4B88_026421 [Cannabis sativa])

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-07
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PT+HD+T+S+ER+ +LY + KG  +N+G++I  EI  C H+   +LFF  LIT+ CR A
Sbjct: 886 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61  GI 63
            +
Sbjct: 946 NV 947

[Close]
BLAST of Spg024181.1 vs. NCBI nr
Match: PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-07
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PTTH   +S+ERV+LLY+M  G  +N+GR+I  EI +C  +    LFFP+LI ++CR A
Sbjct: 103 LPTTHGKIVSKERVLLLYSMLTGKSINMGRMIHREICACAARKSGALFFPSLIIRMCRNA 162

Query: 61  GIEPEEKEEKQRQNTNLFKSVKLVESSCCFSSPINHEP 99
              P    E++  NT    ++ +   +    +  +H+P
Sbjct: 163 R-APYLVNEEKLHNTGEIDAIAVARIAQEGPAEPSHQP 199

[Close]
BLAST of Spg024181.1 vs. ExPASy TrEMBL
Match: A0A2P5B5S0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_268850 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PTTH   +S+ERV+LLY+M  G  +N+GR+I  EI +C  +  R LFFP+LIT++CR A
Sbjct: 134 LPTTHGKIVSKERVLLLYSMLTGKSINVGRMIHREICACAARKSRALFFPSLITRMCRNA 193

[Close]
BLAST of Spg024181.1 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PTTH  T+S++R++LLY+M  G  +N+GR+I  EI +C  +    LFFP+LIT++CR A
Sbjct: 57  LPTTHGKTVSKDRMLLLYSMLTGKSINVGRMIHSEIRACAARKSGALFFPSLITQLCRNA 116

Query: 61  GIEPEEKEEK 71
                  EEK
Sbjct: 117 RAPFLVNEEK 126

[Close]
BLAST of Spg024181.1 vs. ExPASy TrEMBL
Match: A0A2P5BNT0 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_223230 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 35/98 (35.71%), Postives = 57/98 (58.16%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PTTH   +S+ERV+LLY+M  G  +N+GR+I  EI +C  +    LFFP+LI ++CR A
Sbjct: 103 LPTTHGKIVSKERVLLLYSMLTGKSINMGRMIHREICACAARKSGALFFPSLIIRMCRNA 162

Query: 61  GIEPEEKEEKQRQNTNLFKSVKLVESSCCFSSPINHEP 99
              P    E++  NT    ++ +   +    +  +H+P
Sbjct: 163 R-APYLVNEEKLHNTGEIDAIAVARIAQEGPAEPSHQP 199

[Close]
BLAST of Spg024181.1 vs. ExPASy TrEMBL
Match: A0A803Q715 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PT+HD+T+S+ER+ +LY + KG  +N+G++I  EI  C H+   +LFF  LIT+ CR A
Sbjct: 123 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 182

Query: 61  GI 63
            +
Sbjct: 183 NV 184

[Close]
BLAST of Spg024181.1 vs. ExPASy TrEMBL
Match: A0A7J6FZ22 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_026421 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 28/62 (45.16%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1   MPTTHDATISQERVMLLYNMHKGLDLNLGRIIWMEILSCGHKNVRRLFFPTLITKICRLA 60
           +PT+HD+T+S+ER+ +LY + KG  +N+G++I  EI  C H+   +LFF  LIT+ CR A
Sbjct: 886 LPTSHDSTVSRERMWMLYCIVKGKKINVGKVIAKEIFECAHRVKGKLFFSCLITEKCRCA 945

Query: 61  GI 63
            +
Sbjct: 946 NV 947

The following BLAST results are available for this feature:
BLAST of Spg024181.1 vs. NCBI nr
Match NameE-valueIdentityDescription
PON44141.13.6e-0851.67hypothetical protein PanWU01x14_268850 [Parasponia andersonii][more]
XP_015385578.11.1e-0746.48drebrin-like [Citrus sinensis][more]
PON59596.12.4e-0745.71hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
KAF4375842.13.1e-0745.16hypothetical protein G4B88_026421 [Cannabis sativa][more]
PON50458.13.1e-0735.71hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii][more]
BLAST of Spg024181.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg024181.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5B5S01.8e-0851.67Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_268850 PE... [more]
A0A2P5CEY21.1e-0745.71Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE... [more]
A0A2P5BNT01.5e-0735.71Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A803Q7151.5e-0745.16Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6FZ221.5e-0745.16Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_026421 PE=4 SV=1[more]
BLAST of Spg024181.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg024181Spg024181gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg024181.1-cdsSpg024181.1-cds-scaffold4:19785531..19785639CDS
Spg024181.1-cdsSpg024181.1-cds-scaffold4:19786143..19786201CDS
Spg024181.1-cdsSpg024181.1-cds-scaffold4:19786294..19786405CDS
Spg024181.1-cdsSpg024181.1-cds-scaffold4:19786884..19786934CDS
Spg024181.1-cdsSpg024181.1-cds-scaffold4:19787648..19787997CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg024181.1Spg024181.1-proteinpolypeptide