Spg022935.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg022935.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold5: 13718381 .. 13722521 (+)
Sequence length	792
RNA-Seq Expression	Spg022935.1
Synteny	Spg022935.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGTAAGTAAAGAAAATTGAGTGGTGTAGTTTAAAAAAATAGATGTATTGCGGAAAGAAAATAATATAATTTGAGGAAAGGACTTAAATGCGAAAAATATCAAGGCTATTGCAGTGGCAACCTCATGCGTTCATAAGAGACTTGTAGCGCTAATTTTTGATTAATTGATCCATTAATGCTTAAGTAAGAGAAGAAATCATTAAGCTTTCCTTCCCGTGCTCCTTATGCATTTTAACAATAAACTAGCAAATGACTCTGTGCCTAGTTTTATGCGTGAAGTTCAGTTCTCGTAATACTTACAAGGGATTGCGTTAGTCATAATGCAATCAAAGCTCAAACATGCAATATCTTTTAGTGGTAATAATTAAATGTTACCAAGACTACATGACATGCGCTAGCTTGTTCTACTTAGAGAGATCCATATGCATTACCTGTCAAGGATTTATCATACTGATACCGCATCCAGCTGGCCAAGCAGGACTTAGCAATAAAAGAATTAACACAACTAAGTAGAAAGCAAACAATGTTTCTATTAAACCAAAAATATGCGCTTACAAGTGATGCTTATCGCCGCATGAGGCGTTTGCGCTAAGCCTTGATGAGAAGATTTAGCTCATGAAAGCAAAACAGATAAACTTGAAAAGATACATTACACACAAGTGTATTCCCCTTTACAGATTTCTGCAGCTCCTCTCTAAGGTTCTTCTCCTCTCTTTTCTCACCCCCTTCCTTTGAATAAGTGAGTTCTATTTATAGGTGAGGGGAGCAAACTTCTTCAAGTCACCAACGGTCAACTTGCAAGTCCACTTGCGCTAGTTGTGTTAGCTTTAATCATCATTTAGGCCACTTGCGCCCTTTTTTAAACCTCCTTTATCGCCTACTTGTTCTGGCTGCGCCGGCGCTTGTCTTTTCACCCATCTTTTTCTGTCTTTTGATCATCTTGGAAAGTGTGCCTGCGCTGAAAAGATACTTAAAATGTCTAGATTAGTTGCGTTAGCGCTCTGTGTTTATAATTTCTTATCGCATACATGAATATAGCCTTCCGCTTATATCAAAGCACTTTCCCTTTTCTTTATGCGCTAAGATAACGCATTGGAGGCTCTTTTTGCCTTCTTTTAGCCTAAATTTAGAGAGCAAATAACTTGCATTTCGCAAGCAATCAAACACATATTTAGCTCCAATTTCTCGATTTAACTCCAAAACATGATTCCTACTGTTGAAGGAGAAATTTTGACCAATCACAAATTGCCACATCATTACACGAAATTAATGACGAAATTATAATTAATTAAATTTGGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAGGACAAAGTTGGCCAATTAATTTGATCAATTAATTAAAATTAAATTGTTTTGATCAAATTAATTAATTTGACCAATTAATTAAAAAAAATATAATAATTATTTGGATCAAATTTGGGTCTTTTAAATATTTGGGTCATAGGGTTTTGGGTCAAATATGAACCAGACCCAAGACTAAATGATTGAGTTCAAGACCAATGAAGCCCAAGCCCAAGTTGTTGGCCCAAAAGTCCCCAGGGCCCATCCAGCGATAACTCTATAAATAGAGGCGTTCTCTACCATTTTAAGGATCAGAATTTTGAAGCTCCAAGCCAGAGTCAGAGAATTTAGAGAAACTTCATCAAGATTGAAGACTGAAGACCGAAGACTCCTTGAAATCCATAAGTTTCAAAGTGCTGAACACTTCTTGAAGACTGAAAACTCCTTCAAGATCGGAAGACTTCAAGCTCCAAGAATCCATTAAAGCTTCAGACTCGAGATCAAGCATTCCAGCCCTCGAGTGAAACACATCCACACACAAGAGAGAGAATCAGAGGATTAAAGTTAGAGATTGTACATCCACACGCATACAAATATTAATACAAGTATATTGTTTATTCCACGTGTCTCCATCTTCGAAGTTAGGTGTGAACAAATTGGCACGCCTGGTGGGACCATCTCTACCTCTCATCTCTCTCTCTTGTTTAAAGATCCAACTAACGTGATGGCACCAAAGAAAGCTCCCGCGAAGATTACCACATCAAGCGACTCTTACACTGGTCCTGTCACTCGTAGTCGTTCCCAAGGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGAAGGATCTCAAAGCTGATCGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAAGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAATCGAGAAGTGGCTGAGTCTAGCCAGACCACTGCTGCAGGAAAGAATGATAAAGGGAAGGTTGTCGTGCACGAGGATCAGCCGCAACACTCTGCATCAGTTGCCTCTTTGTCTGTCCAACAACTGCAAGACATGATCATGAATTCCATCAGGGCTCAGTATGGTGGACCCACTCAAAGTTCCCTCTGGTATTCTAAACCTTATACAAAGAGGATTGACAATCTCAGACTGCCCATTGGATATCAGCCTCCCAAGTTCCAACAGTTTGATGGAAAGGGCAACCCAAAGCAGCACATCGCCCACTTTGTTGAAACCTGTGAGAACGCTGGTACTCGGGGAGATTTACTTGTTAAGCAATTTGTCCGAACACTAAAAGGAAACGCGTTCGATTGGTACACAGACCTGGAGCCTGATACAATGGACAGTTGGGAACAGATGGAGAGAGAGTTTCTGAATCGCTTCTACAGTACGAGGCGGACAGTTAGTATGACAGAACTCACGAACACGATGCAGCGAAAGGGTGAGCCAGTCATTGACTACATCAACCGTTGGAGAGCCTTGAGTCTCGACTGTAAAGATAGACTCTCTGAGGTGTCCTCTGTTGAGATGTGTACCCAAGGTATGCACTGGGGACTTCTTTATATCTTGCAGGGGATAAAACCCCGAACCTTTGAAGAATTAGTGACTCGCGCTCATGACATGGAGTTGAGCATCGCTAGTAGAGGGAACAAAGACCCCGTAGTCCCAGACATGAGGAAAGAAAAGAAGGAAGTCAAGGGCACTGAGAAAGTTACGAAGAGTGCCACGAAAGAATCCATGGTCGTCAACACGACCCCGTTGAAATTTTCCTCCAAAGGAAGAGAAAGTAAATCCAATAAGCAAATAGAGACAGGCGAGAGACGTCACCAAACTTTAAAAGAAGGACAAGAAAAAGTGTATCCGTTTCCAGACTCCGACGTCCCAGATATGTTGGAACAATTGTTGGAGAAGCAATTAATTGAACTCCCCGAATGCAAACGACTGGAAGAGTTAGGGAAAGTCAATGATCCTAACTACTGCAAGTATCACCGAGTTGTTAGCCATCCAGTGGAGAAATGTTTTGTATTGAAGGAGCTAATCCTTAAGTTGGCTCGTGAAAAGAAAATTGAGTTGGACCTTGATGAGGTGGCTCAAAAAAATCATGCAGCCGTAATGGCAAATGTAGGGAATGAAAATCCCCTAATCTCCTCATGTGATTATGAAGAGAGGCTGATTCAATTTGGGACCCTTGATCTCGTAATGGTTCGATTTCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAGGCAAAGTTACGCACAGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTGGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAGTCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAATGATGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCATAG

mRNA sequence

ATGCTAGGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGAAGGATCTCAAAGCTGATCGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAAGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAATCGAGAAGTGGCTGAGCTGATTCAATTTGGGACCCTTGATCTCGTAATGGTTCGATTTCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAGGCAAAGTTACGCACAGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTGGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAGTCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAATGATGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCATAG

Coding sequence (CDS)

ATGCTAGGAATTGAGATCAAGGAGGATCATACTCCTCTTGCTGTTGCAAGAAGGATCTCAAAGCTGATCGAAGAATCCTCTAAGGATAAGGTTGCAGTCAAAGACAACCCACTGTTCGAATCTGTCGTTCCAACATCTAAGCAGCCAAAGGATACACTAAATCCTGATGTGATGTCCGTCATGATGGCTGATGTAGACCAGGATGAAAGAATGGCAGAGATGGAAAGGAAACTCAATCTCTTAATGAAAGCAGTTGATGAGAGAGATCTTGAGATTGCCTATTTGAAGAACCAGCTGCAGAATCGAGAAGTGGCTGAGCTGATTCAATTTGGGACCCTTGATCTCGTAATGGTTCGATTTCGAAAAGAAGCCACAATGAAGGGGTCCCAAGAAAAATATAATTCCATTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAGGCAAAGTTACGCACAGAAAGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAAGGAAAAAAGAAGTCGAGGAGGTCAAAGCCTGTGGTGGAGGAAAGTGAAGATTTCTTTTACCCTCCACCACCCATAACTTTGGCAGAATACTTCCCAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAGTCGTCACGTGTCACATTGTGGACGTGGTGGAAGATGATGATGTCCCTGCTAGTTCCTCGGAAATGATGGCAAGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCATAG

Protein sequence

MLGIEIKEDHTPLAVARRISKLIEESSKDKVAVKDNPLFESVVPTSKQPKDTLNPDVMSVMMADVDQDERMAEMERKLNLLMKAVDERDLEIAYLKNQLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP

Homology

[Close]

BLAST of Spg022935.1 vs. NCBI nr
Match: KAA0039557.1 (uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK01742.1 uncharacterized protein E5676_scaffold775G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 5.9e-26
Identity = 79/194 (40.72%), Postives = 123/194 (63.40%), Query Frame = 0


Query: 75  ERKLNLLMKAVDERDLEIAYLKNQ-LQNREVAE----LIQFGTLDLVMVRFRKEATMKGS 134
           E+K+ L ++ V + +   A + ++ L  R + E    L+QFGT + V+VRF +E   + S
Sbjct: 57  EKKIELDLEEVAQTNHAAAMIMSEALSPRLIFEQRESLLQFGTFEPVVVRFHQEVAPEDS 116

Query: 135 QEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVV 194
           QEK   IE+++EGWT+V RRKK++ +  QKE R +R+ ++  K+Q+ K KKK+R+ K + 
Sbjct: 117 QEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLMH 176

Query: 195 EESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPG 254
           EE +DF      +TLA++FP RFL D Q E   VV CH ++ +E++++P  S E      
Sbjct: 177 EEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVSK 236

Query: 255 DLSSFSIKDLLSLP 264
           DLS F++ DLLSLP
Sbjct: 237 DLSRFNVNDLLSLP 250

[Close]

BLAST of Spg022935.1 vs. NCBI nr
Match: KAA0046265.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18936.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 6.5e-25
Identity = 81/209 (38.76%), Postives = 124/209 (59.33%), Query Frame = 0


Query: 68  DERMAEMERKLNLLMKAVDERDLEIAYLKN-------------QLQNREVAELIQFGTLD 127
           D  +A+M  +L  L+K     DLE    KN             +L  ++   L+QFGT +
Sbjct: 83  DSDIADMLEQLIQLLKY--RADLEEVAKKNHGALTIMLEAPSSRLIFKQRESLVQFGTFE 142

Query: 128 LVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQ 187
            ++V+F +E  ++ S  K  SIE++NEGW +V RR K++ +  QKES  +R+ +R+ K+Q
Sbjct: 143 PIVVQFYQEVALEDSHVKERSIEEDNEGWIVVTRRMKRKSTLTQKESSFYRNYRRRNKAQ 202

Query: 188 RKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVED 247
           + K KKK+R+ K V EE +DF  P   +T+A+ FP RFL D Q E  EV+TCH ++  E+
Sbjct: 203 KNKKKKKTRKPKLVHEEDKDFPQPQRLVTMADLFPTRFLCDHQDENPEVITCHTINATEE 262

Query: 248 DDVPASSSEMMASPGDLSSFSIKDLLSLP 264
           + +P+ S E      +LS F++ DLLSLP
Sbjct: 263 ESIPSRSLEEEGMSKNLSRFNMDDLLSLP 289

[Close]

BLAST of Spg022935.1 vs. NCBI nr
Match: KAA0031665.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04446.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 6.5e-25
Identity = 78/194 (40.21%), Postives = 122/194 (62.89%), Query Frame = 0


Query: 75  ERKLNLLMKAVDERD-LEIAYLKNQLQNREVAE----LIQFGTLDLVMVRFRKEATMKGS 134
           E+K+ L ++ V + +   +  +   L  R + E    L+QFGT +LV+V+F +E  ++ S
Sbjct: 133 EKKIELDLEEVAQTNHAAVTIMSEALSPRLIFEQRESLVQFGTFELVVVQFHQEVALEDS 192

Query: 135 QEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVV 194
           +EK   IE+++EGW +V RRKK++ +  +KES  +R+ +R  K+Q+ K KKK+R+ K V 
Sbjct: 193 REKERPIEEDDEGWIVVTRRKKRKSTLIEKESCFYRNYRRGNKAQKNKKKKKTRKLKLVH 252

Query: 195 EESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPG 254
           EE +DF  P   +TLA++FP RFL D Q E   VV CH ++V+E++ +P  S E      
Sbjct: 253 EEDKDFPRPQRLVTLADFFPTRFLCDHQDENPGVVACHAINVMEEESIPLRSLEEEEVSK 312

Query: 255 DLSSFSIKDLLSLP 264
            LS F++ DLLSLP
Sbjct: 313 YLSRFNVDDLLSLP 326

[Close]

BLAST of Spg022935.1 vs. NCBI nr
Match: KAA0056780.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97603.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 6.5e-25
Identity = 78/196 (39.80%), Postives = 119/196 (60.71%), Query Frame = 0


Query: 75  ERKLNLLMKAVDERDLEIAYLKNQ-------LQNREVAELIQFGTLDLVMVRFRKEATMK 134
           E+K+ L ++ V + +   A + ++        + RE   L+QFGT + V+V+F +E   +
Sbjct: 33  EKKIELDLEEVAQTNHAAAMIMSEAILPRLIFEQRE--SLVQFGTFEPVVVQFHQEVAPE 92

Query: 135 GSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKP 194
             QEK  SIE ++EGWT+V RRKK++ +  QKE R +R+ +R  K+Q+ K KKK+++ K 
Sbjct: 93  DPQEKERSIEKDDEGWTIVTRRKKRKSTLIQKEPRFYRNYRRGNKTQKNKKKKKTQKLKL 152

Query: 195 VVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMAS 254
           + EE +DF      +TLA +FP RFL D Q E  EVV CH +D +E++ +P  S E    
Sbjct: 153 INEEDKDFPRTQRLVTLANFFPTRFLCDHQDENPEVVACHAIDAIEEESIPLRSLEEEGV 212

Query: 255 PGDLSSFSIKDLLSLP 264
             DL  F++ DLLSLP
Sbjct: 213 SKDLLRFNVDDLLSLP 226

[Close]

BLAST of Spg022935.1 vs. NCBI nr
Match: KAA0035662.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30881.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 7.2e-24
Identity = 72/169 (42.60%), Postives = 107/169 (63.31%), Query Frame = 0


Query: 95  LKNQLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQ 154
           L  +L  ++   L+QFGT + +MV+F +E   K SQEK  SI++++EGW +V  RKK++ 
Sbjct: 58  LSPRLIFKQRESLVQFGTFEPIMVQFHQEVAPKDSQEKERSIKEDDEGWIVVTHRKKRKS 117

Query: 155 SYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLD 214
           +  QKESR +R+ +R  K+Q+ K  KK+RR K V EE +DF  P   +TLA++F  RFL 
Sbjct: 118 TPTQKESRFYRNYRRGNKAQKNKKNKKTRRPKLVDEEDKDFPRPQRLVTLADFFLTRFLC 177

Query: 215 DSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP 264
           D Q E   VV CH ++ +E++ +P  S E      +LS  ++ DLLSLP
Sbjct: 178 DHQDENPGVVACHAINAMEEESIPTRSLEEEGVSKELSRLNMDDLLSLP 226

[Close]

BLAST of Spg022935.1 vs. ExPASy TrEMBL
Match: A0A5D3BSG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00710 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-26
Identity = 79/194 (40.72%), Postives = 123/194 (63.40%), Query Frame = 0


Query: 75  ERKLNLLMKAVDERDLEIAYLKNQ-LQNREVAE----LIQFGTLDLVMVRFRKEATMKGS 134
           E+K+ L ++ V + +   A + ++ L  R + E    L+QFGT + V+VRF +E   + S
Sbjct: 57  EKKIELDLEEVAQTNHAAAMIMSEALSPRLIFEQRESLLQFGTFEPVVVRFHQEVAPEDS 116

Query: 135 QEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVV 194
           QEK   IE+++EGWT+V RRKK++ +  QKE R +R+ ++  K+Q+ K KKK+R+ K + 
Sbjct: 117 QEKERLIEEDDEGWTIVTRRKKRKSTLIQKEHRFYRNYRKGNKAQKNKKKKKTRKLKLMH 176

Query: 195 EESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPG 254
           EE +DF      +TLA++FP RFL D Q E   VV CH ++ +E++++P  S E      
Sbjct: 177 EEDKDFPQTQRLVTLADFFPTRFLGDHQDENPRVVECHAINAIEEENIPLRSLEEEGVSK 236

Query: 255 DLSSFSIKDLLSLP 264
           DLS F++ DLLSLP
Sbjct: 237 DLSRFNVNDLLSLP 250

[Close]

BLAST of Spg022935.1 vs. ExPASy TrEMBL
Match: A0A5D3BE72 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold690G00360 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-25
Identity = 78/196 (39.80%), Postives = 119/196 (60.71%), Query Frame = 0


Query: 75  ERKLNLLMKAVDERDLEIAYLKNQ-------LQNREVAELIQFGTLDLVMVRFRKEATMK 134
           E+K+ L ++ V + +   A + ++        + RE   L+QFGT + V+V+F +E   +
Sbjct: 33  EKKIELDLEEVAQTNHAAAMIMSEAILPRLIFEQRE--SLVQFGTFEPVVVQFHQEVAPE 92

Query: 135 GSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKP 194
             QEK  SIE ++EGWT+V RRKK++ +  QKE R +R+ +R  K+Q+ K KKK+++ K 
Sbjct: 93  DPQEKERSIEKDDEGWTIVTRRKKRKSTLIQKEPRFYRNYRRGNKTQKNKKKKKTQKLKL 152

Query: 195 VVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMAS 254
           + EE +DF      +TLA +FP RFL D Q E  EVV CH +D +E++ +P  S E    
Sbjct: 153 INEEDKDFPRTQRLVTLANFFPTRFLCDHQDENPEVVACHAIDAIEEESIPLRSLEEEGV 212

Query: 255 PGDLSSFSIKDLLSLP 264
             DL  F++ DLLSLP
Sbjct: 213 SKDLLRFNVDDLLSLP 226

[Close]

BLAST of Spg022935.1 vs. ExPASy TrEMBL
Match: A0A5A7SRA6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00450 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-25
Identity = 78/194 (40.21%), Postives = 122/194 (62.89%), Query Frame = 0


Query: 75  ERKLNLLMKAVDERD-LEIAYLKNQLQNREVAE----LIQFGTLDLVMVRFRKEATMKGS 134
           E+K+ L ++ V + +   +  +   L  R + E    L+QFGT +LV+V+F +E  ++ S
Sbjct: 133 EKKIELDLEEVAQTNHAAVTIMSEALSPRLIFEQRESLVQFGTFELVVVQFHQEVALEDS 192

Query: 135 QEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVV 194
           +EK   IE+++EGW +V RRKK++ +  +KES  +R+ +R  K+Q+ K KKK+R+ K V 
Sbjct: 193 REKERPIEEDDEGWIVVTRRKKRKSTLIEKESCFYRNYRRGNKAQKNKKKKKTRKLKLVH 252

Query: 195 EESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPG 254
           EE +DF  P   +TLA++FP RFL D Q E   VV CH ++V+E++ +P  S E      
Sbjct: 253 EEDKDFPRPQRLVTLADFFPTRFLCDHQDENPGVVACHAINVMEEESIPLRSLEEEEVSK 312

Query: 255 DLSSFSIKDLLSLP 264
            LS F++ DLLSLP
Sbjct: 313 YLSRFNVDDLLSLP 326

[Close]

BLAST of Spg022935.1 vs. ExPASy TrEMBL
Match: A0A5A7TY01 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00180 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-25
Identity = 81/209 (38.76%), Postives = 124/209 (59.33%), Query Frame = 0


Query: 68  DERMAEMERKLNLLMKAVDERDLEIAYLKN-------------QLQNREVAELIQFGTLD 127
           D  +A+M  +L  L+K     DLE    KN             +L  ++   L+QFGT +
Sbjct: 83  DSDIADMLEQLIQLLKY--RADLEEVAKKNHGALTIMLEAPSSRLIFKQRESLVQFGTFE 142

Query: 128 LVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQSYAQKESRLFRDSKRKVKSQ 187
            ++V+F +E  ++ S  K  SIE++NEGW +V RR K++ +  QKES  +R+ +R+ K+Q
Sbjct: 143 PIVVQFYQEVALEDSHVKERSIEEDNEGWIVVTRRMKRKSTLTQKESSFYRNYRRRNKAQ 202

Query: 188 RKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLDDSQGEALEVVTCHIVDVVED 247
           + K KKK+R+ K V EE +DF  P   +T+A+ FP RFL D Q E  EV+TCH ++  E+
Sbjct: 203 KNKKKKKTRKPKLVHEEDKDFPQPQRLVTMADLFPTRFLCDHQDENPEVITCHTINATEE 262

Query: 248 DDVPASSSEMMASPGDLSSFSIKDLLSLP 264
           + +P+ S E      +LS F++ DLLSLP
Sbjct: 263 ESIPSRSLEEEGMSKNLSRFNMDDLLSLP 289

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BLAST of Spg022935.1 vs. ExPASy TrEMBL
Match: A0A5A7SWL2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00850 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.5e-24
Identity = 72/169 (42.60%), Postives = 107/169 (63.31%), Query Frame = 0


Query: 95  LKNQLQNREVAELIQFGTLDLVMVRFRKEATMKGSQEKYNSIEDENEGWTLVVRRKKQRQ 154
           L  +L  ++   L+QFGT + +MV+F +E   K SQEK  SI++++EGW +V  RKK++ 
Sbjct: 58  LSPRLIFKQRESLVQFGTFEPIMVQFHQEVAPKDSQEKERSIKEDDEGWIVVTHRKKRKS 117

Query: 155 SYAQKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFYPPPPITLAEYFPRRFLD 214
           +  QKESR +R+ +R  K+Q+ K  KK+RR K V EE +DF  P   +TLA++F  RFL 
Sbjct: 118 TPTQKESRFYRNYRRGNKAQKNKKNKKTRRPKLVDEEDKDFPRPQRLVTLADFFLTRFLC 177

Query: 215 DSQGEALEVVTCHIVDVVEDDDVPASSSEMMASPGDLSSFSIKDLLSLP 264
           D Q E   VV CH ++ +E++ +P  S E      +LS  ++ DLLSLP
Sbjct: 178 DHQDENPGVVACHAINAMEEESIPTRSLEEEGVSKELSRLNMDDLLSLP 226

The following BLAST results are available for this feature:

BLAST of Spg022935.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039557.1	5.9e-26	40.72	uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0046265.1	6.5e-25	38.76	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK18936.1 ty3-gyp...	[more]
KAA0031665.1	6.5e-25	40.21	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04446.1 ty3-gyp...	[more]
KAA0056780.1	6.5e-25	39.80	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ97603.1 ty3-gyp...	[more]
KAA0035662.1	7.2e-24	42.60	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30881.1 ty3-gyp...	[more]

BLAST of Spg022935.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg022935.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSG5	2.9e-26	40.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BE72	3.2e-25	39.80	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SRA6	3.2e-25	40.21	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TY01	3.2e-25	38.76	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SWL2	3.5e-24	42.60	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Spg022935.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..183

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg022935	Spg022935	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg022935.1-cds	Spg022935.1-cds-scaffold5:13718381..13718387	CDS
Spg022935.1-cds	Spg022935.1-cds-scaffold5:13720507..13720816	CDS
Spg022935.1-cds	Spg022935.1-cds-scaffold5:13722047..13722521	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg022935.1	Spg022935.1-protein	polypeptide