Spg022504.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg022504.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glycine-rich RNA-binding protein 2
Location	scaffold2: 4387856 .. 4392633 (+)
Sequence length	1305
RNA-Seq Expression	Spg022504.1
Synteny	Spg022504.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCTCGTGCTCCTAGGGTTTTTAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGAAACTGAGGCGGCTAGCGGCATTGGGGACCGAGAGGAGATGACCGAGCTCGGCCCGCGCAAGCGGGCCGAATGGTCGGCCTCGGCCTTGGGTCGAGGCCGACCATATGGGTCGGGCCAAGTTGGCCCGGCCCTTTGGTCGGTTCTTCCTCTGGGTCGGACTCCTAGCCCTATTTTTGCCCGGACGTCCTCGTCATCTCCTTGTGCGTCGGGCGGTCCAAAATTGCCTATAACAAAACAAAACACCAATTATTATCGAAGAGTGCTGTCAAAAAAAAATAAATAAATAACATCAAGGAGTTATTGGTTCGATTTCCACCCTCTAATCATTGAACTAGAATCACAAACTCTAATATTCAAATGGATAATGTTTTCTTAATAAATATTAAAAGTTTAAAACTACAAATTTATTTTGAATAAAAAAGTATAAACTTCGAATCTTACAAAATTAAAGACTGAATTGTAAAAAATACCCTACAACTATAAGATTTGTTTAAAAAATGTATATGAACGTTAAACAAGTTTAAAAAGTACCCATGAACTTTAAAAAAAGTTTTAAAAAAATACCATTACTATTAAATATTGGATGTAAATCGTTAAAGTTTCAGTTTCATTAATATCCCTGAACTTAAAAAAAAAAAAACACCCTTATTGGAAAATGTTTCTCATTTTTTCCTTCTCTCGCCGTAAATTAGTCATCGATGAAAATTTATGCAAGACTTTGTTTATAAGGATTGTTTGCAACACAACACCAGATAAAAATAGAGTTTGAAATCGAGTTTTCACTTTTAAAATGTGTAAATAAGATAACTATGATTTATATACATTGTTTCATTTTTGTTGCTATTTGTTTGTGTATGTTAGTGATAAAAAATATAAGTGTCTATAAGACTACGAGTTTGGTTCAGTTTACAAGATTAATTAATTAAACGTTTTATATATGATTTTGTTCTTATTAATATTTAAGAAATGTTAGAACCACTGTGTAACAATAGTTTAAGTTATTTTTTGTAAAATAAATATAGAGAAAGCTAATGAGTCATGGTTGGTGAGGAAACAATATTGAAAAAGTTGTCAACAAAACGAAGTCAGACACATGTAGAATTTCAATAATGAAACAAAAGTCATATTGAAGTTTCAACAAATACATGACAAATAAGCAAGACTTCACATTAATTTTTATGGAAAAATAATTTACGGTGAGAGAAGAAGACTGTCAACAAAACGAAGTCAGACACATGTAGAATTTCAATAACGAAACAAAAGTCATATTGAAGTTTCAACACGATATAATCTAGACAGGCTCCTGTGATGATATGTATTGAAATAAAATAAAAGTTAGCTCCTAGTCCACAAATACATGAGAAATAAGCAATACTTACATTAATCTTTATGGATAAATAATTTACTGTGAGAGAGGGAAAAAAAATATTTTTCAATAAGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAATGTTAAATGATATTAATGAAACTCAAACTTTAACGGTTTTCATAAAAAATTAACGGTAAGAGTATTTTGAACATTCTTCAAAGTTTAGTGGTATTTTTATTTTTATTTTTTAAAGTTCACGAGCATTTTTTTTTTAAAGAAACCCACCATAGTATTTTATTTTATTTTAGTTAATTTATATAATTTAGCCTAATTTAAATATTGTCCAAAAGTTTGACCTCGCGTCTCCAAGATATTTTTTCGCGTCACTAATCTGCACCGTCATCAATCCATCCAACGGCCCGGATTTCTCCTGCTTCGCTCCATATATTCTCATTTAATTTCTCATATTCGTAAAAAACCCCCACTGATCAGAAAACCTTCTAGGGTTTTAGCATCGCATCGGAAGTGAAGAAGAAGGTTCGTTCTCAACTCACTCCGTCGTCTCCGTTTGTGTTTCTTCCTTACACATTTTTTTGCCATTTGTATATGTATTACTGATTTAATCACTTCCAAAATCGTTGAAAATGTTCATATCGTTGTCGCGGCGTGTGTGTGTATTAAGGGTGTCGGACCTTTGATCGATGGTTTCTTAATATTCTCCGATTTCTTTTCCGGCTCGTGGGATTTGGGAACTGGGGGAAATGTTGGCAGAAAGTAGTCGATTATGGGACTGTTTTCCGTTTGCGTTTTGTATTGGTTTTGTTGGGATTCTTTTGTTCTGGTACACGAACCAGTGGTAAGGATCATGTGGTTGAATTTGAAATGTTCCTGTTAACTACCAAAACATTGCTTATGTAAGTTGGCGCTTAAAGGGAAAGTTATGAACGTTATTACGTACTCAAGTAATGCATTTCACTCCTCTTTAGTGTTATTTTTTTTTACCCTCTCCTATTTAGTGTTTTTAGAATGTTCTGGCGATGAGTCTGTGTAGAAGTTTGATTGCGACGGTGTTCTGTTTACTCTAATATGTCGAAAATCTAAGTTGGCTGTAATTTGAGGCTAACAGAACAGCTTGCATTATTCCCTCTGATACTGTGGTTGAATCTTCGTCATTCATTTTTCTCAGGTTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTAAGGCAAGGTGCAAATAAGAGGATTGGATCGGATTTTCAGGCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTGTTGGAGGTTCTCTGAGAATAGTTGTTATTTCTTTATGGAACATAAAGTCGCCAATTTCTTTTTCTTTATCTTGTGCTTGTACGCGTGTTTATGATGCAGGTATTTCATACGGCACTGATGATCAAAGTCTGAGAGAAGCCTTCACTAAATATGGTGAAGTTGTTGAAGGTATATCACCATTCACCAACTCGTTTACAATGAGTGGTTGAAGGTTATCGTAGAAGTATCTTTCTTTAAATTTTTATCAGATTTTATTTTTTTTTAAAGAAAGCAATTTAAATCTTGTATAATGAGCATTCAGTCGCATGCTTTTGAACACTCCACAGTAGACTAATACTGAGATGTATTTTTACGCAACCCGAATGAAATATGGAATAAACAAACTTTTGGAACCCATATGATGAATATACTTGATGAATTATGTTTATTTGGGGGGTTGGAGCTGGATACTACTAGTGCTAGTGGATTGTGTCAAGTCCGAAGTTTAGTAATAAATGTTGGTTTCCTTGTTTACCTTTTTTTTTTCTTTACCCTGTGATAGCTAGGGTCATTGTGGACCGCGAAACTGGAAGATCCCGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGTAACGATTCAGCTGTCGGCTCAATGTGCAATGTGCTTTAAAAAGATGGCACATTTTATATTCACATGCTGTCATAAAATGTTTCATGTCAGCTGTTTGCTTTCTTTTCTTTTTGATGATTGTGCCCGTGTTACTTGCTAGAAGAAGACTGTATTTAGTGAATGTATTTATGTTAATCTTTCGTAATCTTTGCTATATTACAGTGACTGACACTGTGATATTGAGGGCTTGAAAGTGCGGAAACATTAAAGCTAATAGTAGTTCTTTCTCTATACCATGCTCAACAGTTATATTGTGTACTAGTGTAAAGTGTTCCAGCAGTTGTCATGTTGCTAGGTTATTTATTCTTATATATGTTTCTTTCATCTAGAAAGAAAAGAGTGTTGTGTGATTAATGTGAGTTCTATATTGGAGGCTTGTCCCAATTTCTGTTATAAGGCTGGCAGTCACTCCTCGTTCAAGTTATAGCACAGCCGTTCCTCTTTTATGTTCTCAAATATTAGCTGGTACATGGTATGAAGTTGCCATTTAGATTTAAAAAAAAACTTGTAAAACGAAATGAGTAGCATGAGTGGCTTTTGGAGGCTTGTTCCATTCCACCTTTAAACCTAATAGAATTAAGCATATTTAAAATTTAACTGACTAATTTATGGAGATGCATTTTTTAGTTGATTTATTTTGGTTCTTAATATTTGCTAAACAGAAAATACTCAATGTCTTAGGTCATTCTTGTTCATTTTATTTGAAAACAGGATCTTCATGGTCGTCGTGTGAGGGTGAATTATGCTAATGATAGAAGTCGTGGTGTTGGTGGTGGTGGTTATGGTGGTGGTGGGTATGGCGGGGGGGCTGGTGGTTATGGTGGTGGGGCAGGAGGCTATGGCGGTGGTGGGGCAGGAGGCTATGGCGGTGGTGGGTATGGTGGTGGGGCTGGTGGCTATGGCGGTGGTGCTGGAGGTTATGGAGGTGGTGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGCGGATATTCTGGTTCTGGGACAGGATATAGTTCCGGAGGCAACTATACGAGCAATTTTGGCGGTGACAGCCATGGAAGTGTTGGTACAGGTGGTGGCTTTGGTGGGAATGATGTTGGCTACAATGCTGCTAACACATACGGAAGTGAGACTAGCGCTGGTTTTGGTACCGGCGGTGGTGGTGACTATTTTGCCAACAGTGGGTCAAATGCAAGCTCTGGGTTTGGTGGATACACCGGTGAGGATCAATTTGGCAGCAACGAAACAAACACCATGAATGCGTCTGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGAAATGATAGGGACGAAGATGACGATGCAAACGACTTTGCTAAAAGAGCCTGA

mRNA sequence

ATGCCTGCTCGTGCTCCTAGGGTTTTTAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGAAACTGAGGCGGCTAGCGGCATTGGGGACCGAGAGGAGATGACCGAGCTCGGCCCGCGCAAGCGGGCCGAATGGTCGGCCTCGGCCTTGGGTCGAGGCCGACCATATGGGTCGGGCCAAGTTGGCCCGGCCCTTTGGTCGGTTCTTCCTCTGGGTCGGACTCCTAGCCCTATTTTTGCCCGGACGTCCTCGTCATCTCCTTGTGCGTCGGGCGTAGTCGATTATGGGACTGTTTTCCGTTTGCGTTTTGTATTGGTTTTGTTGGGATTCTTTTGTTCTGGTACACGAACCAGTGGTTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTAAGGCAAGGTGCAAATAAGAGGATTGGATCGGATTTTCAGGCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTGTTGGAGGTATTTCATACGGCACTGATGATCAAAGTCTGAGAGAAGCCTTCACTAAATATGGTGAAGTTGTTGAAGCTAGGGTCATTGTGGACCGCGAAACTGGAAGATCCCGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGATCTTCATGGTCGTCGTGTGAGGGTGAATTATGCTAATGATAGAAGTCGTGGTGTTGGTGGTGGTGGTTATGGTGGTGGTGGGTATGGCGGGGGGGCTGGTGGTTATGGTGGTGGGGCAGGAGGCTATGGCGGTGGTGGGGCAGGAGGCTATGGCGGTGGTGGGTATGGTGGTGGGGCTGGTGGCTATGGCGGTGGTGCTGGAGGTTATGGAGGTGGTGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGCGGATATTCTGGTTCTGGGACAGGATATAGTTCCGGAGGCAACTATACGAGCAATTTTGGCGGTGACAGCCATGGAAGTGTTGGTACAGGTGGTGGCTTTGGTGGGAATGATGTTGGCTACAATGCTGCTAACACATACGGAAGTGAGACTAGCGCTGGTTTTGGTACCGGCGGTGGTGGTGACTATTTTGCCAACAGTGGGTCAAATGCAAGCTCTGGGTTTGGTGGATACACCGGTGAGGATCAATTTGGCAGCAACGAAACAAACACCATGAATGCGTCTGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGAAATGATAGGGACGAAGATGACGATGCAAACGACTTTGCTAAAAGAGCCTGA

Coding sequence (CDS)

ATGCCTGCTCGTGCTCCTAGGGTTTTTAGGAATTCGGAGGCGTTTCGGGACAAACCAGGCGAAACTGAGGCGGCTAGCGGCATTGGGGACCGAGAGGAGATGACCGAGCTCGGCCCGCGCAAGCGGGCCGAATGGTCGGCCTCGGCCTTGGGTCGAGGCCGACCATATGGGTCGGGCCAAGTTGGCCCGGCCCTTTGGTCGGTTCTTCCTCTGGGTCGGACTCCTAGCCCTATTTTTGCCCGGACGTCCTCGTCATCTCCTTGTGCGTCGGGCGTAGTCGATTATGGGACTGTTTTCCGTTTGCGTTTTGTATTGGTTTTGTTGGGATTCTTTTGTTCTGGTACACGAACCAGTGGTTGCTTCAAAATGGCTTTCCTAAGTAAGGTTGGAAATATACTAAGGCAAGGTGCAAATAAGAGGATTGGATCGGATTTTCAGGCTTCCGGTTTGTCTATCTGTCAAGCTGTACGATGGATGTCTTCCATGCAAAGTTCAAAACTTTTTGTTGGAGGTATTTCATACGGCACTGATGATCAAAGTCTGAGAGAAGCCTTCACTAAATATGGTGAAGTTGTTGAAGCTAGGGTCATTGTGGACCGCGAAACTGGAAGATCCCGAGGATTTGGATTTGTGACTTACACCTCTAGTGAGGAGGCCTCTAGTGCCATCCAGGCATTGGATGGACAGGATCTTCATGGTCGTCGTGTGAGGGTGAATTATGCTAATGATAGAAGTCGTGGTGTTGGTGGTGGTGGTTATGGTGGTGGTGGGTATGGCGGGGGGGCTGGTGGTTATGGTGGTGGGGCAGGAGGCTATGGCGGTGGTGGGGCAGGAGGCTATGGCGGTGGTGGGTATGGTGGTGGGGCTGGTGGCTATGGCGGTGGTGCTGGAGGTTATGGAGGTGGTGGGAGTGGAGGAGGTTATGGTGATGGTAGTGGCGGATATTCTGGTTCTGGGACAGGATATAGTTCCGGAGGCAACTATACGAGCAATTTTGGCGGTGACAGCCATGGAAGTGTTGGTACAGGTGGTGGCTTTGGTGGGAATGATGTTGGCTACAATGCTGCTAACACATACGGAAGTGAGACTAGCGCTGGTTTTGGTACCGGCGGTGGTGGTGACTATTTTGCCAACAGTGGGTCAAATGCAAGCTCTGGGTTTGGTGGATACACCGGTGAGGATCAATTTGGCAGCAACGAAACAAACACCATGAATGCGTCTGGAGATCAAGGCCTAGGGGAGCAACTGGAAGGAAATGATAGGGACGAAGATGACGATGCAAACGACTTTGCTAAAAGAGCCTGA

Protein sequence

MPARAPRVFRNSEAFRDKPGETEAASGIGDREEMTELGPRKRAEWSASALGRGRPYGSGQVGPALWSVLPLGRTPSPIFARTSSSSPCASGVVDYGTVFRLRFVLVLLGFFCSGTRTSGCFKMAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLREAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYGGGAGGYGGGGSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGGDSHGSVGTGGGFGGNDVGYNAANTYGSETSAGFGTGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNASGDQGLGEQLEGNDRDEDDDANDFAKRA

Homology

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BLAST of Spg022504.1 vs. NCBI nr
Match: KAG6587583.1 (Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 387.5 bits (994), Expect = 1.5e-103
Identity = 263/327 (80.43%), Postives = 274/327 (83.79%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANKRIGSD QA  LSICQAVRWMSSMQSSKLFVGGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVVEAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYGGGAGGYGGG 302
           DRSRGVGGGGYGGGGYGG  GGYGG  GGYGGG  GGYG    GGGAGGYGGGAGGYGGG
Sbjct: 121 DRSRGVGGGGYGGGGYGG--GGYGG--GGYGGG--GGYG----GGGAGGYGGGAGGYGGG 180

Query: 303 GSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGG---------------DSHGSVGTGGGFG 362
           GS GGYGDGSGG+  S TGYSSGGNY++NFGG               DS GSV TGGGFG
Sbjct: 181 GS-GGYGDGSGGF--STTGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGFG 240

Query: 363 GNDVGYNAANTYGSETSAGFGTGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNAS 422
           GND GYNA+N  G ++     +GGGGDYF+N GS  SSGFGGYTG DQF S ET+TMNA 
Sbjct: 241 GNDAGYNASNFSGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNAP 300

Query: 423 GDQGLGEQLEGNDRDEDDDANDFAKRA 435
           G  GLGEQLEGNDRDEDDDANDFAKRA
Sbjct: 301 G-SGLGEQLEGNDRDEDDDANDFAKRA 313

[Close]

BLAST of Spg022504.1 vs. NCBI nr
Match: XP_023530847.1 (glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530848.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo] >XP_023530849.1 glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.5 bits (981), Expect = 4.9e-102
Identity = 263/329 (79.94%), Postives = 274/329 (83.28%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANKRIGSD QAS LSICQAVRWMSSMQSSKLFVGGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVVEAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGY-GGGAGGYGG 302
           DRSRGVGGGGYGGG      GGYGG  GGYGGGGAGGYG    GGGAGGY GGGAGGYGG
Sbjct: 121 DRSRGVGGGGYGGG------GGYGG--GGYGGGGAGGYG----GGGAGGYGGGGAGGYGG 180

Query: 303 GGSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGG---------------DSHGSVGTGGGF 362
           GGS GGYGDGSGG+  S TGYSSGGNYT+NFGG               DS GSVGTGGGF
Sbjct: 181 GGS-GGYGDGSGGF--STTGYSSGGNYTNNFGGGSQGSGGNYGNEFASDSRGSVGTGGGF 240

Query: 363 GGNDVGYNAANTYGSETSAGFGTGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNA 422
           GGND GYNA+N  G ++     +GGGGDYF+N GS  SSGFGG+TG DQF S ET+TMNA
Sbjct: 241 GGNDAGYNASNFSGGDSGNYNVSGGGGDYFSNRGSEESSGFGGFTGGDQFSSKETDTMNA 300

Query: 423 SGDQGLGEQLEGNDRDE-DDDANDFAKRA 435
            G  GLGEQLEGNDRDE DDDANDFAKRA
Sbjct: 301 PG-SGLGEQLEGNDRDEDDDDANDFAKRA 313

[Close]

BLAST of Spg022504.1 vs. NCBI nr
Match: XP_022971767.1 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022971776.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima] >XP_022971783.1 glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 382.1 bits (980), Expect = 6.4e-102
Identity = 259/327 (79.20%), Postives = 271/327 (82.87%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANK+IGSD QAS LSICQAVRWMSSMQSSKLFVGGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVVEAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYGGGAGGYGGG 302
           DRSRGVGGGGYGGGG  GG GGYGGG GGYGG   GGYGGGGYG      GGG GGYGGG
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGG-GGYGG---GGYGGGGYG------GGGPGGYGGG 180

Query: 303 GSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGG---------------DSHGSVGTGGGFG 362
           GS GGYGDGSGG+  S TGYSSGGNYT+NFGG               DS GSV TGGGFG
Sbjct: 181 GS-GGYGDGSGGF--STTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFG 240

Query: 363 GNDVGYNAANTYGSETSAGFGTGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNAS 422
           GND GYNA+N  G ++     +GGGGDYF+N GS  SSGFGGYTG DQF S ET++MNA 
Sbjct: 241 GNDAGYNASNFSGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAP 300

Query: 423 GDQGLGEQLEGNDRDEDDDANDFAKRA 435
           G  GLGEQLEGNDRDEDDDANDFAKRA
Sbjct: 301 G-SGLGEQLEGNDRDEDDDANDFAKRA 313

[Close]

BLAST of Spg022504.1 vs. NCBI nr
Match: XP_038878732.1 (glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 381.3 bits (978), Expect = 1.1e-101
Identity = 266/330 (80.61%), Postives = 279/330 (84.55%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFL K GNILRQGANKRIG D QAS LSICQAVRWMSSMQSSKLFVGGISY TDDQSLR
Sbjct: 1   MAFLGKFGNILRQGANKRIGLDLQASSLSICQAVRWMSSMQSSKLFVGGISYNTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAF KYGEV+EAR+IVDRETGRSRGFGFVT+TSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFAKYGEVLEARIIVDRETGRSRGFGFVTFTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGV-GGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYGGGAGGYGG 302
           DR+RG  GGGGYGGG YGGG GGYGG  GGYGGGG  GYGGGGYGGG G  GGGAGGYGG
Sbjct: 121 DRTRGFGGGGGYGGGSYGGGGGGYGG--GGYGGGGGDGYGGGGYGGGGGYSGGGAGGYGG 180

Query: 303 GGSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGG--------DSHGSVGT-GGGFGGNDVG 362
           GGSGGGYGDGSGGY  SGTGYSSGGNY+   GG        D+ GSVGT GGGFGGND G
Sbjct: 181 GGSGGGYGDGSGGY--SGTGYSSGGNYSRGSGGNYSNDNASDNLGSVGTGGGGFGGNDAG 240

Query: 363 YNAA------NTYGSETSAGFG--TGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTM 422
           YNAA      NT+ S T+AGFG  +GGG DYFANSG +ASSG GGYTG +QFGS ETNTM
Sbjct: 241 YNAASNFASGNTHDSGTNAGFGNVSGGGSDYFANSGFDASSGVGGYTGGEQFGS-ETNTM 300

Query: 423 NASGDQGLGEQLEGNDRDEDDDANDFAKRA 435
           +ASGDQGLGEQLEGNDRDE DD +DFAKRA
Sbjct: 301 DASGDQGLGEQLEGNDRDE-DDTDDFAKRA 324

[Close]

BLAST of Spg022504.1 vs. NCBI nr
Match: XP_022971790.1 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 374.0 bits (959), Expect = 1.7e-99
Identity = 245/327 (74.92%), Postives = 257/327 (78.59%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANK+IGSD QAS LSICQAVRWMSSMQSSKLFVGGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVVEAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYGGGAGGYGGG 302
           DRSRGVGGGGYGGG                     GGYGGGGYG      GGG GGYGGG
Sbjct: 121 DRSRGVGGGGYGGG---------------------GGYGGGGYG------GGGPGGYGGG 180

Query: 303 GSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGG---------------DSHGSVGTGGGFG 362
           GS GGYGDGSGG+  S TGYSSGGNYT+NFGG               DS GSV TGGGFG
Sbjct: 181 GS-GGYGDGSGGF--STTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFG 240

Query: 363 GNDVGYNAANTYGSETSAGFGTGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNAS 422
           GND GYNA+N  G ++     +GGGGDYF+N GS  SSGFGGYTG DQF S ET++MNA 
Sbjct: 241 GNDAGYNASNFSGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAP 296

Query: 423 GDQGLGEQLEGNDRDEDDDANDFAKRA 435
           G  GLGEQLEGNDRDEDDDANDFAKRA
Sbjct: 301 G-SGLGEQLEGNDRDEDDDANDFAKRA 296

[Close]

BLAST of Spg022504.1 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-47
Identity = 184/329 (55.93%), Postives = 216/329 (65.65%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSK GNIL+Q  NK++ +    S  S+ QA+R MS   SSKLF+GG++Y  D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVV+ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGG-GGYGGGAGGYGGGA-GGYG 302
           DR+    GGG+GGGGYGGG GGY GG+GGY GGGAGGYGG GGYGGGAGGYGG + GGYG
Sbjct: 121 DRT---SGGGFGGGGYGGGGGGY-GGSGGY-GGGAGGYGGSGGYGGGAGGYGGNSGGGYG 180

Query: 303 GGGSGGGYGDGSGGYSGSGTGY-SSGGNYTSNFG-GDSHGSVGTGGGFGGNDVG-YNAAN 362
           G  +GG  G G+GGY G  TG+  +GG Y S+ G G S  + G G       VG YN ++
Sbjct: 181 GNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAVGDYNGSS 240

Query: 363 TYGSETSAGFGTGG--GGDYFANSGSNASSGFGG----------YTGEDQFGSNETNTMN 422
            YGS  + G   GG  G   F  S    SS FGG          + GEDQFGS E +   
Sbjct: 241 GYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGDNTQFTAGGQFGGEDQFGSMEKSETK 300

Query: 423 ASGDQGLGEQLEGNDRDEDDDANDFAKRA 435
              D  +G + E           D AKRA
Sbjct: 301 ME-DGPIGGEFE-----------DVAKRA 309

[Close]

BLAST of Spg022504.1 vs. ExPASy Swiss-Prot
Match: Q9C909 (Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG5 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 8.0e-31
Identity = 168/323 (52.01%), Postives = 198/323 (61.30%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVG +  Q ++    S       S+ Q++R MS   SSK+FVGGISY TD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAF+KYGEVV+A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 243 DRSRGVGGGGYG--GGGYGGGAGGYGGGAGGYGGGGAGGYGG-GGYGGGAGGYGGGAGGY 302
           +R  G GG G+G  GGGYG   GGYG  AGGY GGGAGGYGG   Y G AGG GG  G  
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGY-GGGAGGYGGNSSYSGNAGGGGGYGGNS 180

Query: 303 GGGGSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGGDSHGSVGTGGGFGGNDVGYNAANTY 362
             GG+ GGYG G+  YSG+  G   GG Y SNFGG   G  G  GG GG++   N A   
Sbjct: 181 SYGGNAGGYG-GNPPYSGNAVG--GGGGYGSNFGGG--GGYGVAGGVGGSE---NFAQ-- 240

Query: 363 GSETSAGFG--------TGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNASGDQG 422
           GS T+AGF          G   D+   SG      FGG   ++QFG  E N    +G  G
Sbjct: 241 GSSTNAGFDDKFESNQPLGNDTDHQTESGLGGDEQFGG--SDNQFGDAE-NGNTENGPVG 289

Query: 423 LGEQLEGNDRDEDDDANDFAKRA 435
                     D+ DD  D AKRA
Sbjct: 301 F---------DQTDD-GDVAKRA 289

[Close]

BLAST of Spg022504.1 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-22
Identity = 97/153 (63.40%), Postives = 114/153 (74.51%), Query Frame = 0


Query: 166 KLFVGGISYGTDDQSLREAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 225
           + FVGG+ + TDDQSL+ AF+KYG+V+++++I DRETGRSRGFGFVT+ S E    AI+A
Sbjct: 7   RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66

Query: 226 LDGQDLHGRRVRVNYAND-RSRGVGGGGYGGGGYG-----GGAGGYGGGAGGYGGGGAGG 285
           ++GQDL GR + VN A   RS G GG G GGGGYG     GG GGYGGG GGYGGG +G 
Sbjct: 67  MNGQDLDGRNITVNEAQSRRSDGGGGFGGGGGGYGGQRREGGGGGYGGGGGGYGGGRSG- 126

Query: 286 YGGGGYG---GGAGGYGGGAGGYGG--GGSGGG 308
            GGGGYG   GG GGYGGG GGYGG  GGSGGG
Sbjct: 127 -GGGGYGSRDGGGGGYGGGGGGYGGSRGGSGGG 157

[Close]

BLAST of Spg022504.1 vs. ExPASy Swiss-Prot
Match: Q99070 (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-19
Identity = 91/156 (58.33%), Postives = 115/156 (73.72%), Query Frame = 0


Query: 166 KLFVGGISYGTDDQSLREAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 225
           + FVGG+++ T++++L +AF  +G+V++++VI DRETGRSRGFGFVT++S +    AI+ 
Sbjct: 9   RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68

Query: 226 LDGQDLHGRRVRVNYANDRSRGVGGGGY--GGGGYGG-GAGGYGGGAGGYGG--GGAGGY 285
           ++G++L GR + VN A  R  G GGGGY  GGGGYGG   GGYGGG GGYGG   G GGY
Sbjct: 69  MNGKELDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGGGGGGYGGRREGGGGY 128

Query: 286 GGGGYGGGAGGYGG--GAGGYGGGGSGGGYGDGSGG 315
           GGGGYGGG GGYGG  G GGYGGGG  GG    SGG
Sbjct: 129 GGGGYGGGGGGYGGREGGGGYGGGGGYGGNRGDSGG 164

[Close]

BLAST of Spg022504.1 vs. ExPASy Swiss-Prot
Match: P49311 (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 4.1e-19
Identity = 92/161 (57.14%), Postives = 112/161 (69.57%), Query Frame = 0


Query: 166 KLFVGGISYGTDDQSLREAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 225
           + FVGG+++ TD++SL  AF+++GE+V++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68

Query: 226 LDGQDLHGRRVRVNYANDRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGY 285
           ++GQDL GR + VN A  R  G GGGG GGGG   G GGYGGG GGYGGG      GGGY
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGAGGGGRGGGGGYRGGGGYGGGGGGYGGGRR---EGGGY 128

Query: 286 GGGAGGY---GGGAGGYGGGG--SGGGYGDGSGGYSGSGTG 322
            GG GGY   GGG GGYGGGG   GGGYG G GG  G G G
Sbjct: 129 SGGGGGYSSRGGGGGGYGGGGRRDGGGYGGGEGGGYGGGGG 166

[Close]

BLAST of Spg022504.1 vs. ExPASy TrEMBL
Match: A0A6J1I7Z2 (glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 3.1e-102
Identity = 259/327 (79.20%), Postives = 271/327 (82.87%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANK+IGSD QAS LSICQAVRWMSSMQSSKLFVGGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVVEAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYGGGAGGYGGG 302
           DRSRGVGGGGYGGGG  GG GGYGGG GGYGG   GGYGGGGYG      GGG GGYGGG
Sbjct: 121 DRSRGVGGGGYGGGGGYGGGGGYGGG-GGYGG---GGYGGGGYG------GGGPGGYGGG 180

Query: 303 GSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGG---------------DSHGSVGTGGGFG 362
           GS GGYGDGSGG+  S TGYSSGGNYT+NFGG               DS GSV TGGGFG
Sbjct: 181 GS-GGYGDGSGGF--STTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFG 240

Query: 363 GNDVGYNAANTYGSETSAGFGTGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNAS 422
           GND GYNA+N  G ++     +GGGGDYF+N GS  SSGFGGYTG DQF S ET++MNA 
Sbjct: 241 GNDAGYNASNFSGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAP 300

Query: 423 GDQGLGEQLEGNDRDEDDDANDFAKRA 435
           G  GLGEQLEGNDRDEDDDANDFAKRA
Sbjct: 301 G-SGLGEQLEGNDRDEDDDANDFAKRA 313

[Close]

BLAST of Spg022504.1 vs. ExPASy TrEMBL
Match: A0A6J1I6P9 (glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470449 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 8.4e-100
Identity = 245/327 (74.92%), Postives = 257/327 (78.59%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANK+IGSD QAS LSICQAVRWMSSMQSSKLFVGGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKKIGSDLQASSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVVEAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYGGGAGGYGGG 302
           DRSRGVGGGGYGGG                     GGYGGGGYG      GGG GGYGGG
Sbjct: 121 DRSRGVGGGGYGGG---------------------GGYGGGGYG------GGGPGGYGGG 180

Query: 303 GSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGG---------------DSHGSVGTGGGFG 362
           GS GGYGDGSGG+  S TGYSSGGNYT+NFGG               DS GSV TGGGFG
Sbjct: 181 GS-GGYGDGSGGF--STTGYSSGGNYTNNFGGGSQGTGGNYGNEFASDSRGSVSTGGGFG 240

Query: 363 GNDVGYNAANTYGSETSAGFGTGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNAS 422
           GND GYNA+N  G ++     +GGGGDYF+N GS  SSGFGGYTG DQF S ET++MNA 
Sbjct: 241 GNDAGYNASNFSGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDSMNAP 296

Query: 423 GDQGLGEQLEGNDRDEDDDANDFAKRA 435
           G  GLGEQLEGNDRDEDDDANDFAKRA
Sbjct: 301 G-SGLGEQLEGNDRDEDDDANDFAKRA 296

[Close]

BLAST of Spg022504.1 vs. ExPASy TrEMBL
Match: A0A6J1E1P2 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111430026 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 2.4e-99
Identity = 259/322 (80.43%), Postives = 275/322 (85.40%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANKR G +FQA  LSI QAVRWMSSMQSSK+F+GGISY TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRTGLNFQAPSLSIFQAVRWMSSMQSSKVFIGGISYSTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEV+EARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYGGGAGGYGGG 302
           DRSRG+GGGGYGGGG G G GGYGGG GGYGGGG GGYGGG YGGG G YGGG+  YGGG
Sbjct: 121 DRSRGMGGGGYGGGGGGYGGGGYGGGGGGYGGGG-GGYGGGSYGGGGGSYGGGS--YGGG 180

Query: 303 GS-GGGYGDGSGGYSGSGTGYSSGGNYTSNFGGDSHGSVGTGGGFGGNDVGYNAA----- 362
           GS GGGYG  SGG  G G+G+S+G NY+S+FG  S GS G   G GGND G NAA     
Sbjct: 181 GSGGGGYGGESGG--GFGSGFSAGDNYSSSFGSGSQGS-GGNYGTGGNDAGSNAASNFAS 240

Query: 363 -NTYGSETSAGFGT---GGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNASGDQGL 422
            NT+GS TSAGF T    GGGDYFANSGS+ASSGFGGYTG DQFGSNE NT+NASGDQGL
Sbjct: 241 GNTFGSGTSAGFDTNVSNGGGDYFANSGSDASSGFGGYTGGDQFGSNEANTLNASGDQGL 300

Query: 423 GEQLEGNDRDEDDDANDFAKRA 435
           GEQLEGNDRDEDD+A+DFAKRA
Sbjct: 301 GEQLEGNDRDEDDNADDFAKRA 316

[Close]

BLAST of Spg022504.1 vs. ExPASy TrEMBL
Match: A0A6J1EZK6 (glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111440991 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 3.2e-99
Identity = 255/328 (77.74%), Postives = 267/328 (81.40%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANKRIGSD QA  LSICQAVRWMSSMQSSKLFVGGIS+ TDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRIGSDLQAPSLSICQAVRWMSSMQSSKLFVGGISFSTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVVEAR+IVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVVEARIIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGGAGGYG-GGAGGYGG 302
           DRSRGVGGGGYGGG             GGYGGGG G  GGGGYGGG GGYG GGAGGYGG
Sbjct: 121 DRSRGVGGGGYGGG-------------GGYGGGGYG--GGGGYGGG-GGYGDGGAGGYGG 180

Query: 303 GGSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGG---------------DSHGSVGTGGGF 362
           GGS GGYGDGSGG+  S TGYSSGGNY++NFGG               DS GSV TGGGF
Sbjct: 181 GGS-GGYGDGSGGF--STTGYSSGGNYSNNFGGGSQGSGGNYGNEFASDSRGSVSTGGGF 240

Query: 363 GGNDVGYNAANTYGSETSAGFGTGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNA 422
           GGND GYNA+N  G ++     +GGGGDYF+N GS  SSGFGGYTG DQF S ET+TMNA
Sbjct: 241 GGNDAGYNASNFSGGDSGNYNVSGGGGDYFSNRGSEESSGFGGYTGGDQFSSKETDTMNA 300

Query: 423 SGDQGLGEQLEGNDRDEDDDANDFAKRA 435
            G  GLGEQLEGNDRDEDDDA+DFAKRA
Sbjct: 301 PG-SGLGEQLEGNDRDEDDDADDFAKRA 308

[Close]

BLAST of Spg022504.1 vs. ExPASy TrEMBL
Match: A0A6J1C030 (glycine-rich RNA-binding protein 3, mitochondrial-like OS=Momordica charantia OX=3673 GN=LOC111006839 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 5.6e-96
Identity = 253/333 (75.98%), Postives = 265/333 (79.58%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVGNILRQGANKR+GSDFQAS LSICQAVRWMSSMQSSKLF+GGISYGTDDQSLR
Sbjct: 1   MAFLSKVGNILRQGANKRVGSDFQASSLSICQAVRWMSSMQSSKLFIGGISYGTDDQSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEV+EARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN
Sbjct: 61  EAFTKYGEVIEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGY--GGGAGGYGGGAGGYG 302
           DRSRG+GGGGYGGGGYGGG+GGYGG  GGY GGG+GGYGGGGY  GGG+GGYG G  G G
Sbjct: 121 DRSRGIGGGGYGGGGYGGGSGGYGG--GGY-GGGSGGYGGGGYGGGGGSGGYGVGGAGGG 180

Query: 303 GGGSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGGDSHGSVGTGGGFGGNDVGYNAA---- 362
            GGSGGGYGDGSGGY         G N T N   DS GSVG GGGFGGND GYN A    
Sbjct: 181 YGGSGGGYGDGSGGY---------GYNATGNLASDSQGSVGVGGGFGGNDAGYNNAASNS 240

Query: 363 ---NTYGSETSAGFGT-----------GGGGDYFANSGSNASSGFGGYTGEDQFGSNETN 422
              NTY S  +AGFGT           GGG DYFA+S         GY+G DQF SNETN
Sbjct: 241 DGGNTYASGATAGFGTGSGNYNVAGGDGGGNDYFASS---------GYSGGDQFSSNETN 300

Query: 423 TMN-ASGDQGLGEQLEGNDRDEDDDANDFAKRA 435
           T N ASGDQ  GEQL+GN RD+DDDANDFAKRA
Sbjct: 301 TANAASGDQDPGEQLDGNYRDDDDDANDFAKRA 312

[Close]

BLAST of Spg022504.1 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 191.0 bits (484), Expect = 1.9e-48
Identity = 184/329 (55.93%), Postives = 216/329 (65.65%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSK GNIL+Q  NK++ +    S  S+ QA+R MS   SSKLF+GG++Y  D+ SLR
Sbjct: 1   MAFLSKFGNILKQTTNKQLNAQVSLSSPSLFQAIRCMS---SSKLFIGGMAYSMDEDSLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAFTKYGEVV+ RVI+DRETGRSRGFGFVT+TSSE ASSAIQALDG+DLHGR V+VNYAN
Sbjct: 61  EAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGG-GGYGGGAGGYGGGA-GGYG 302
           DR+    GGG+GGGGYGGG GGY GG+GGY GGGAGGYGG GGYGGGAGGYGG + GGYG
Sbjct: 121 DRT---SGGGFGGGGYGGGGGGY-GGSGGY-GGGAGGYGGSGGYGGGAGGYGGNSGGGYG 180

Query: 303 GGGSGGGYGDGSGGYSGSGTGY-SSGGNYTSNFG-GDSHGSVGTGGGFGGNDVG-YNAAN 362
           G  +GG  G G+GGY G  TG+  +GG Y S+ G G S  + G G       VG YN ++
Sbjct: 181 GNAAGGYGGSGAGGYGGDATGHGGAGGGYGSSGGFGSSGNTYGEGSSASAGAVGDYNGSS 240

Query: 363 TYGSETSAGFGTGG--GGDYFANSGSNASSGFGG----------YTGEDQFGSNETNTMN 422
            YGS  + G   GG  G   F  S    SS FGG          + GEDQFGS E +   
Sbjct: 241 GYGSANTYGSSNGGFAGDSQFGGSPVGNSSQFGGDNTQFTAGGQFGGEDQFGSMEKSETK 300

Query: 423 ASGDQGLGEQLEGNDRDEDDDANDFAKRA 435
              D  +G + E           D AKRA
Sbjct: 301 ME-DGPIGGEFE-----------DVAKRA 309

[Close]

BLAST of Spg022504.1 vs. TAIR 10
Match: AT1G74230.1 (glycine-rich RNA-binding protein 5 )

HSP 1 Score: 136.3 bits (342), Expect = 5.7e-32
Identity = 168/323 (52.01%), Postives = 198/323 (61.30%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAFLSKVG +  Q ++    S       S+ Q++R MS   SSK+FVGGISY TD+  LR
Sbjct: 1   MAFLSKVGRLFSQTSSHVTASS------SMLQSIRCMS---SSKIFVGGISYSTDEFGLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           EAF+KYGEVV+A++IVDRETGRSRGF FVT+TS+EEAS+A+Q LDGQDLHGRR+RVNYA 
Sbjct: 61  EAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYAT 120

Query: 243 DRSRGVGGGGYG--GGGYGGGAGGYGGGAGGYGGGGAGGYGG-GGYGGGAGGYGGGAGGY 302
           +R  G GG G+G  GGGYG   GGYG  AGGY GGGAGGYGG   Y G AGG GG  G  
Sbjct: 121 ERGSGFGGRGFGGPGGGYGASDGGYGAPAGGY-GGGAGGYGGNSSYSGNAGGGGGYGGNS 180

Query: 303 GGGGSGGGYGDGSGGYSGSGTGYSSGGNYTSNFGGDSHGSVGTGGGFGGNDVGYNAANTY 362
             GG+ GGYG G+  YSG+  G   GG Y SNFGG   G  G  GG GG++   N A   
Sbjct: 181 SYGGNAGGYG-GNPPYSGNAVG--GGGGYGSNFGGG--GGYGVAGGVGGSE---NFAQ-- 240

Query: 363 GSETSAGFG--------TGGGGDYFANSGSNASSGFGGYTGEDQFGSNETNTMNASGDQG 422
           GS T+AGF          G   D+   SG      FGG   ++QFG  E N    +G  G
Sbjct: 241 GSSTNAGFDDKFESNQPLGNDTDHQTESGLGGDEQFGG--SDNQFGDAE-NGNTENGPVG 289

Query: 423 LGEQLEGNDRDEDDDANDFAKRA 435
                     D+ DD  D AKRA
Sbjct: 301 F---------DQTDD-GDVAKRA 289

[Close]

BLAST of Spg022504.1 vs. TAIR 10
Match: AT4G13850.2 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-28
Identity = 90/162 (55.56%), Postives = 114/162 (70.37%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAF +K+G +LRQ     I S+      S+  ++R M    S+KLF+GG+S+GTDD SLR
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           +AF  +G+VV+A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 243 DR---SRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYG 282
           DR    R  GGG  GG  YGGG GGYGGG GGYGGGG GG G
Sbjct: 121 DRPSAPRAYGGG--GGYSYGGGGGGYGGGGGGYGGGGDGGGG 152

[Close]

BLAST of Spg022504.1 vs. TAIR 10
Match: AT4G13850.1 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 123.6 bits (309), Expect = 3.8e-28
Identity = 95/166 (57.23%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 123 MAFLSKVGNILRQGANKRIGSDFQASGLSICQAVRWMSSMQSSKLFVGGISYGTDDQSLR 182
           MAF +K+G +LRQ     I S+      S+  ++R M    S+KLF+GG+S+GTDD SLR
Sbjct: 1   MAFCNKLGGLLRQ----NISSNGNVPVTSMLGSLRLM----STKLFIGGLSWGTDDASLR 60

Query: 183 EAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYAN 242
           +AF  +G+VV+A+VIVDRETGRSRGFGFV +     A++AI  +DG++L+GR +RVN AN
Sbjct: 61  DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 120

Query: 243 DRSRGVGGGGYGGGGYGGGAGGYGGGAGGYGGGGAGGYGGGGYGGG 289
           DR       G GGGGY GG GGYGGG GGYGGGG GGYGGGG GGG
Sbjct: 121 DRPSAPRAYG-GGGGYSGGGGGYGGGGGGYGGGG-GGYGGGGDGGG 156

[Close]

BLAST of Spg022504.1 vs. TAIR 10
Match: AT2G21660.1 (cold, circadian rhythm, and rna binding 2 )

HSP 1 Score: 92.4 bits (228), Expect = 9.4e-19
Identity = 94/165 (56.97%), Postives = 113/165 (68.48%), Query Frame = 0


Query: 166 KLFVGGISYGTDDQSLREAFTKYGEVVEARVIVDRETGRSRGFGFVTYTSSEEASSAIQA 225
           + FVGG+++ TDD++L  AF +YG+V+++++I DRETGRSRGFGFVT+   +    AI+ 
Sbjct: 9   RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68

Query: 226 LDGQDLHGRRVRVNYANDRSRGVGGG--GYGGGGY-GGGAGGYGGGAGGYGGGGAGGYGG 285
           ++GQDL GR + VN A  R  G GGG  G GGGGY  GG GGY GG G YGGGG    GG
Sbjct: 69  MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGGGGYSGGGGSYGGGGGRREGG 128

Query: 286 GGYGGGAGGY---GGGAGGYGGG--GSGGGYGDG-SGGYSGSGTG 322
           GGY GG GGY   GGG G YGGG    GGGYG G  GGY GSG G
Sbjct: 129 GGYSGGGGGYSSRGGGGGSYGGGRREGGGGYGGGEGGGYGGSGGG 173

The following BLAST results are available for this feature:

BLAST of Spg022504.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587583.1	1.5e-103	80.43	Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_023530847.1	4.9e-102	79.94	glycine-rich RNA-binding protein 2, mitochondrial-like [Cucurbita pepo subsp. pe...	[more]
XP_022971767.1	6.4e-102	79.20	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 [Cucurbita max...	[more]
XP_038878732.1	1.1e-101	80.61	glycine-rich RNA-binding protein 3, mitochondrial-like [Benincasa hispida]	[more]
XP_022971790.1	1.7e-99	74.92	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 [Cucurbita max...	[more]

BLAST of Spg022504.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNR1	2.7e-47	55.93	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9C909	8.0e-31	52.01	Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	2.3e-22	63.40	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]
Q99070	2.4e-19	58.33	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor OX=4558 GN=GRP2 PE=2 SV=1	[more]
P49311	4.1e-19	57.14	Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]

BLAST of Spg022504.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I7Z2	3.1e-102	79.20	glycine-rich RNA-binding protein 3, mitochondrial-like isoform X1 OS=Cucurbita m...	[more]
A0A6J1I6P9	8.4e-100	74.92	glycine-rich RNA-binding protein 2, mitochondrial-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1E1P2	2.4e-99	80.43	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1EZK6	3.2e-99	77.74	glycine-rich RNA-binding protein 2, mitochondrial-like OS=Cucurbita moschata OX=...	[more]
A0A6J1C030	5.6e-96	75.98	glycine-rich RNA-binding protein 3, mitochondrial-like OS=Momordica charantia OX...	[more]

BLAST of Spg022504.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61030.1	1.9e-48	55.93	glycine-rich RNA-binding protein 3	[more]
AT1G74230.1	5.7e-32	52.01	glycine-rich RNA-binding protein 5	[more]
AT4G13850.2	1.7e-28	55.56	glycine-rich RNA-binding protein 2	[more]
AT4G13850.1	3.8e-28	57.23	glycine-rich RNA-binding protein 2	[more]
AT2G21660.1	9.4e-19	56.97	cold, circadian rhythm, and rna binding 2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 309..327 score: 35.53 coord: 170..181 score: 42.71 coord: 252..267 score: 53.12 coord: 280..290 score: 56.82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 383..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 383..434
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 123..433
None	No IPR available	PANTHER	PTHR48027:SF9	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL	coord: 123..433
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 166..239 e-value: 2.6E-30 score: 116.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 167..237 e-value: 1.4E-22 score: 79.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 165..243 score: 22.264858
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 153..261 e-value: 8.2E-33 score: 115.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 162..275

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg022504	Spg022504	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg022504.1-cds	Spg022504.1-cds-scaffold2:4387856..4388129	CDS
Spg022504.1-cds	Spg022504.1-cds-scaffold2:4390055..4390135	CDS
Spg022504.1-cds	Spg022504.1-cds-scaffold2:4390466..4390621	CDS
Spg022504.1-cds	Spg022504.1-cds-scaffold2:4390715..4390783	CDS
Spg022504.1-cds	Spg022504.1-cds-scaffold2:4391157..4391263	CDS
Spg022504.1-cds	Spg022504.1-cds-scaffold2:4392016..4392633	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg022504.1	Spg022504.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding