Spg022454.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg022454.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mediator of RNA polymerase II transcription subunit 17
Location	scaffold2: 6637714 .. 6639541 (-)
Sequence length	501
RNA-Seq Expression	Spg022454.1
Synteny	Spg022454.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGAAAACAAGAAATTTTCCCAAGTTCATGTGCATTTTATATATTTTGATTTCAGAGAAAAAAAAAATATTTAAATCGAAAAAGAAAGAAAAATGGGGTAGAGTATTATCTGCCGAAAAAACCAGGGAAGCGAGATGTTTATCCAAAAAAATCAGGGACAAATAGGTCATTTCGATATTCGCAGTCGTCGGCTGAGCTCTCTGTCAGTGGACTCTCATCCCGATCCCGGACTTCTCCTCCGTTCTAGGGCTCGCTCCAAATCTTTTCCCTCCCAAACATTATTCCGGGAAAACACTGTGTGAATATGGACGGAGACATGAAAGTTTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAAAACGGCCTCGAACGATTCCCATCGTATGTTTCTTCTTTCTCTGGTTTTTTCCCCCATTTTTTGCTTCCTGAGATAGCAGAGGAAACAAAAATTAGCTCGTATCCGTGTTAAGGTAGAAGAAGATATATCCTGTTTGACTAATGCCTGGTTGTGTTTTGGCATTCTTAATTCTGATTACTTTCGTGTCTGGTTATTGTTGATTGTTTAGAGTGAACTCTGACACGATTTATCTAATTATGCTAAATTAATTTGGAAGCCAATCTTTTTAATGTATTCCTCGGTTTTCCTGGTGAAAGTTTCTGCTCAATTTCTTGATCGTTTTTGGTTAATTAAGGTTGATTTTTGCTGTATAACAGAGACGTAGGTTATGAAGAGAAACGGTTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGAGCTCCAAAGAGAGTTCAACGCCGTGGCCATGGCAGAACATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGACCTCATCAACACCGTGAGTTTTTATGTCGAACACCTCTAATTTTCTAGATTTATACCATACCGTTTGTTGTATAGAAAATGGGAAAATGTTACTTGTTTCACATAAATGTGCATGCAAATGTTGAGGGAAGTTGTCTTTGATTTTACTCTTACATTTATGTCTTGGCATTGTTTTTAAGAGTGTGAGGTGCACCAAAGTGCAATAGTCTTCTAGGGCTTATGTGCAAGGCACAAAAGAAAGTGAGGCACACAATAGCAAAATGTAAATACACACACACACACACACGAAGAGTAATAGTATTATGAATAAGAAGATGAAAAGGGAAATGAAGCATCAAAATCTTCCGCTAGGATTAGAATGCTAATAATCATGATCTAGAAAATTGTGATTATTTTTTCTCTCCTTGTTCTCGTGGATTAATATAAATGAACTGGTTCCGTGAGAATCTTCAATTGATAAATATGGTGCCATTATATAATACCGTCTGCCTTGATTTTACTGTAGGTAGAAGCTAATGATGCAGTAACAGTGGCTGGCATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTGTAGCAACGAAACTACAATGCTTTCGAGTACTATTTTTATTCCTCTTCTGTTCACAGAAGTGATGATTGCCTTAGGCCCTTAATACCTTATCTGATTACCTTGCTTTGTTTGGGGCGGCACAACCATGTTGTAAAGATTAATTTGCAGTATTATTCAATTATATATCATCTTATTATCTGTACTATCGTTTTGGAAGTGCCTTATTTTATCTCCTACCCCTTACTCTCTACAGCATCTTGGTAAATATTTCAAGCAGTCAGCTAAAGGTTTGGAACGCCAGGTTGCAAGGGAAGCAAGGTTTTATGGTGCTCTAATTCGGTAA

mRNA sequence

ATGGACGGAGACATGAAAGTTTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAAAACGGCCTCGAACGATTCCCATCAGACGTAGGTTATGAAGAGAAACGGTTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGAGCTCCAAAGAGAGTTCAACGCCGTGGCCATGGCAGAACATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGACCTCATCAACACCGTAGAAGCTAATGATGCAGTAACAGTGGCTGGCATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTTGCCTTATTTTATCTCCTACCCCTTACTCTCTACAGCATCTTGGTAAATATTTCAAGCAGTCAGCTAAAGGTTTGGAACGCCAGGTTGCAAGGGAAGCAAGGTTTTATGGTGCTCTAATTCGGTAA

Coding sequence (CDS)

ATGGACGGAGACATGAAAGTTTCTCTCGACAAGCTTCCCGTCAAGCGCTTGGAGGCCATAGAAGAAAACGGCCTCGAACGATTCCCATCAGACGTAGGTTATGAAGAGAAACGGTTGTCGCTTATTCGGAGAATTGACTTTGCTTGGGCAATAGAGAAGGACGATGACAAAAAGAAGCAGAAGAAGAGCTCCAAAGAGAGTTCAACGCCGTGGCCATGGCAGAACATGATAGAAAACTTGCAGTTGGCTCATCAAGAGCTCTCTGTTATCATAGACCTCATCAACACCGTAGAAGCTAATGATGCAGTAACAGTGGCTGGCATGACAAGGCCAAAACCATTACCTAATGAAGTTTTATCAGATCTTGGAGTGTCTTGCCTTATTTTATCTCCTACCCCTTACTCTCTACAGCATCTTGGTAAATATTTCAAGCAGTCAGCTAAAGGTTTGGAACGCCAGGTTGCAAGGGAAGCAAGGTTTTATGGTGCTCTAATTCGGTAA

Protein sequence

MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQKKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLSDLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR

Homology

[Close]

BLAST of Spg022454.1 vs. NCBI nr
Match: XP_022145057.1 (mediator of RNA polymerase II transcription subunit 17 [Momordica charantia])

HSP 1 Score: 295.4 bits (755), Expect = 3.0e-76
Identity = 153/166 (92.17%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVSLDKLPVKRLEAIEENGLERFP DVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPLDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS
Sbjct: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. NCBI nr
Match: XP_022987637.1 (mediator of RNA polymerase II transcription subunit 17-like [Cucurbita maxima])

HSP 1 Score: 290.4 bits (742), Expect = 9.7e-75
Identity = 150/166 (90.36%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KK+SKES+TPW WQ+MIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS
Sbjct: 61  KKTSKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. NCBI nr
Match: XP_023516123.1 (mediator of RNA polymerase II transcription subunit 17-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 290.4 bits (742), Expect = 9.7e-75
Identity = 150/166 (90.36%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KK+SKES+TPW WQ+MIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS
Sbjct: 61  KKTSKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. NCBI nr
Match: KAG6589859.1 (Mediator of RNA polymerase II transcription subunit 17, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 149/166 (89.76%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVS+DKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSVDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KK+SKES+TPW WQ+MIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS
Sbjct: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. NCBI nr
Match: KAG7023531.1 (Mediator of RNA polymerase II transcription subunit 17 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.3 bits (739), Expect = 2.2e-74
Identity = 149/166 (89.76%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVS+DKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSVDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KK+SKES+TPW WQ+MIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS
Sbjct: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. ExPASy Swiss-Prot
Match: F4K460 (Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana OX=3702 GN=MED17 PE=1 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 6.3e-61
Identity = 118/168 (70.24%), Postives = 144/168 (85.71%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDD--KK 60
           MD DM++SLD+LP+KRLE+IEENG ERFPSDV Y++KR+SLIRRIDFAWA+E++D+  KK
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEEEDELKKK 60

Query: 61  KQKKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEV 120
           KQKKSSK+S   W W+ M+ENLQLAHQEL+VIIDLI+TV+ANDAVTVAGMTRPKP+PNE+
Sbjct: 61  KQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPNEI 120

Query: 121 LSDLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           LSDL VS    +      ++LG YFKQSAK LE+++ REARFYGALIR
Sbjct: 121 LSDLAVS---TATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIR 165

[Close]

BLAST of Spg022454.1 vs. ExPASy TrEMBL
Match: A0A6J1CVE8 (Mediator of RNA polymerase II transcription subunit 17 OS=Momordica charantia OX=3673 GN=LOC111014574 PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.5e-76
Identity = 153/166 (92.17%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVSLDKLPVKRLEAIEENGLERFP DVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPLDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS
Sbjct: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. ExPASy TrEMBL
Match: A0A6J1JAW7 (Mediator of RNA polymerase II transcription subunit 17 OS=Cucurbita maxima OX=3661 GN=LOC111485135 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.7e-75
Identity = 150/166 (90.36%), Postives = 156/166 (93.98%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KK+SKES+TPW WQ+MIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS
Sbjct: 61  KKTSKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. ExPASy TrEMBL
Match: A0A6J1H995 (Mediator of RNA polymerase II transcription subunit 17 OS=Cucurbita moschata OX=3662 GN=LOC111461671 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 149/166 (89.76%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KK+SKES+TPW WQ+MIENLQLAHQELSVIIDLINTVEANDAVTV GMTRPKPLPNEVLS
Sbjct: 61  KKASKESATPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVGGMTRPKPLPNEVLS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. ExPASy TrEMBL
Match: A0A0A0KXX2 (Mediator of RNA polymerase II transcription subunit 17 OS=Cucumis sativus OX=3659 GN=MED17 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.8e-74
Identity = 150/166 (90.36%), Postives = 155/166 (93.37%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MD DMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDEDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKESSTPW WQ+MIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVL+
Sbjct: 61  KKSSKESSTPWQWQSMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLA 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. ExPASy TrEMBL
Match: A0A6J1KUD0 (mediator of RNA polymerase II transcription subunit 17-like OS=Cucurbita maxima OX=3661 GN=LOC111498312 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 148/166 (89.16%), Postives = 154/166 (92.77%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60
           MDGD+ VSLDKLP+KRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ
Sbjct: 1   MDGDITVSLDKLPIKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDDKKKQ 60

Query: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEVLS 120
           KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDA+TVAGMTRPK LPNE LS
Sbjct: 61  KKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAITVAGMTRPKLLPNEALS 120

Query: 121 DLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           DLGVS   ++      +HLGKYFKQSAKGLERQVAREARFYGALIR
Sbjct: 121 DLGVS---VATKLQCFRHLGKYFKQSAKGLERQVAREARFYGALIR 163

[Close]

BLAST of Spg022454.1 vs. TAIR 10
Match: AT5G20170.1 (RNA polymerase II transcription mediators )

HSP 1 Score: 235.0 bits (598), Expect = 4.5e-62
Identity = 118/168 (70.24%), Postives = 144/168 (85.71%), Query Frame = 0


Query: 1   MDGDMKVSLDKLPVKRLEAIEENGLERFPSDVGYEEKRLSLIRRIDFAWAIEKDDD--KK 60
           MD DM++SLD+LP+KRLE+IEENG ERFPSDV Y++KR+SLIRRIDFAWA+E++D+  KK
Sbjct: 1   MDSDMEISLDRLPIKRLESIEENGAERFPSDVDYDDKRVSLIRRIDFAWALEEEDELKKK 60

Query: 61  KQKKSSKESSTPWPWQNMIENLQLAHQELSVIIDLINTVEANDAVTVAGMTRPKPLPNEV 120
           KQKKSSK+S   W W+ M+ENLQLAHQEL+VIIDLI+TV+ANDAVTVAGMTRPKP+PNE+
Sbjct: 61  KQKKSSKDSVEQWKWKGMVENLQLAHQELTVIIDLIDTVQANDAVTVAGMTRPKPMPNEI 120

Query: 121 LSDLGVSCLILSPTPYSLQHLGKYFKQSAKGLERQVAREARFYGALIR 167
           LSDL VS    +      ++LG YFKQSAK LE+++ REARFYGALIR
Sbjct: 121 LSDLAVS---TATKLQGYRNLGNYFKQSAKALEQKINREARFYGALIR 165

The following BLAST results are available for this feature:

BLAST of Spg022454.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145057.1	3.0e-76	92.17	mediator of RNA polymerase II transcription subunit 17 [Momordica charantia]	[more]
XP_022987637.1	9.7e-75	90.36	mediator of RNA polymerase II transcription subunit 17-like [Cucurbita maxima]	[more]
XP_023516123.1	9.7e-75	90.36	mediator of RNA polymerase II transcription subunit 17-like [Cucurbita pepo subs...	[more]
KAG6589859.1	2.2e-74	89.76	Mediator of RNA polymerase II transcription subunit 17, partial [Cucurbita argyr...	[more]
KAG7023531.1	2.2e-74	89.76	Mediator of RNA polymerase II transcription subunit 17 [Cucurbita argyrosperma s...	[more]

BLAST of Spg022454.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K460	6.3e-61	70.24	Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana O...	[more]

BLAST of Spg022454.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CVE8	1.5e-76	92.17	Mediator of RNA polymerase II transcription subunit 17 OS=Momordica charantia OX...	[more]
A0A6J1JAW7	4.7e-75	90.36	Mediator of RNA polymerase II transcription subunit 17 OS=Cucurbita maxima OX=36...	[more]
A0A6J1H995	1.4e-74	89.76	Mediator of RNA polymerase II transcription subunit 17 OS=Cucurbita moschata OX=...	[more]
A0A0A0KXX2	1.8e-74	90.36	Mediator of RNA polymerase II transcription subunit 17 OS=Cucumis sativus OX=365...	[more]
A0A6J1KUD0	3.0e-74	89.16	mediator of RNA polymerase II transcription subunit 17-like OS=Cucurbita maxima ...	[more]

BLAST of Spg022454.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20170.1	4.5e-62	70.24	RNA polymerase II transcription mediators	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019313	Mediator complex, subunit Med17	PANTHER	PTHR13114	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17	coord: 1..166

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg022454	Spg022454	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg022454.1-cds	Spg022454.1-cds-scaffold2:6637714..6637839	CDS
Spg022454.1-cds	Spg022454.1-cds-scaffold2:6638037..6638123	CDS
Spg022454.1-cds	Spg022454.1-cds-scaffold2:6638616..6638814	CDS
Spg022454.1-cds	Spg022454.1-cds-scaffold2:6639148..6639236	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg022454.1-five_prime_utr	Spg022454.1-five_prime_utr-scaffold2:6639237..6639541	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg022454.1	Spg022454.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0070847	core mediator complex
molecular_function	GO:0003712	transcription coregulator activity