Spg016941.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg016941.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 43224105 .. 43227373 (+)
Sequence length318
RNA-Seq ExpressionSpg016941.1
SyntenySpg016941.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCGCTCGTTTGGCCAGCAAGAGATTCATATGCCGATGGATGTGTAATTCTGCGTGTTTTATCGGAACATTCGGACGCCGAATCGGTTTAGTGTGAACCTCATCTCTGATGATCCAGAATCTATTTCTTGGAGAAGAAGAAACAGTGGACAAGAATCGAGGTTTGTTTAGTTTAAAATGTTGCTTGATCCTGGTACGTTTGATTGCCTACTAGAGGAAGCGATTGTTTGAAGTTTTATTTTCCAAATCCCCCCTAAAACCAAAGGATCGAATGGCTGTTTAATGATTTGGTATTCATTTCGCCGATTTGGCAGTTTCGTATCTTTCTGATTTTGGGAGCGAAAGCTTGTAATCGTCAGGTGGAGGATGTTTCGGCTCGGTTAAACCAGCAAGAAAAGTTGGTTTGGTCCGGTATGTATTCACGGATCAGACTGTTGCTATGTTCATGTTATGGGGTTCGCCTGCATGAATTGTTGAATCCATATGAGTTTACTTTGAAGGCATTTAGTTCAAATTCTGTAATTCATATATGTCGTGCCTGGTAATTCGAAATATGGATCGATCTAATGTGCGAGGAGTATTAAGTATTATATTTATCACAACCAATTGGTTCGAATTGTAGGGTCGTGAAATGATTATTTGGATCGTAGATGGAGTATAGAACTTATGTCCTCATCTAGCTTGGGGGCTAAACGAGCCGATTAGTCCTACAAGTCAGAAGCACAGCCTACTGTTTTACAATTCTATCAGAGTCTACAGAGGATGCCAAATCTGGGCGCGAGAGACACACTATACTTGGTCACAATTGTTATCAACTGCATGAATTATATCGTTAAAACACCTGATGGTATGTTTGGGTTCAAATGACTATCTTTAAAGGGCACCTGTTTTGATTATAACGGTGAGCATCCTTGTTTAATACATCATCAGTTGATATCGACAATTTTTCTTCAAGTTTACGAACTTGTAAACTACAGGCAGTTATGAGGTTCTATAGACATTGCTTAGCATTCTAATACTCGGGTGCCATTGACGAAGGTGTATCTTCCTTGGTTCATCTGCTCAGTTGGTTTGTTTGTTGAGTTCACATCATTGCTTGAATAAATTTCAAAATCTACACATCTCCTTTCTAAACATTTGAGATGTGGTCACATTCACATCCACCTTCACAAGATTGAATTGTTTGGTATTTTAAATGTGATTTGCTGCTTAAATAAGTTTCAAAATTCACGAGCTCCCTTCTAAAGTTGTGCTAACTGTTAACTGTTAACTGTGCTGGACTTTGTATAAACCTTTATAAATAGAAGAAAAGCTCGAGGTTACGCATGGCTCTTCCCTATTTCATCTCTTTCTGTCATGGTGTATGTTAAAAACTTTGCAATTGCTTTGCACGTGTGACAAAAAATTCATAGAGTTAGCATCTTTGGTGGAACAGAGGACTTTGGTGAAATGCAAGAGATGACAGCATTTTCCTTGGAGAATATGATTAATTATACAATTGCGCATTTCTAGACCTCCATTTTCTAGGCATCGCCAGGAATGATGTTCAGTATCTAGTTTGATGCTACTAGTAATTCAAGCACCACTGTTGATGGCCATTGGTAAATCCGGAGTAAAATGGAGTTGAAAGAAGTTACTGCCATGGGGAGGGAGGTGAGGACAAAACTCATGCTCCTTGCACATTAGATTGGATTTGATATCTATTGACAATATGTTCTTCCATCAACAAAGAACTTGGAAGTTCATAAGAGCGGATGCCGAACAATAAGCATCTCCTACCAATGAATGCATTATTCTGTGGGGGTGAAAGACTATTACAAAGTGCATATTTGGTTGTTTCCCTTCAAATGAAACAGCCATACTTTTTTCTTCTTTTCTTCGATCTCAGAATGAATATCATTATATAGTTGTAAGCTATGGTTTCAGGGATGCTTATAATTTACACTCTCGTAGTTTGCAAAATTTGCATACACTTGCGGACTTGCATTTATCCTGTGATTTATTGCTGCTTGCTGGAATTTTTAATTTTATTTTATTATATATGTTTATCTAAGTTGCAGAACCCATTTCTTGTTCAAAGATGTACAGGAAGCAACTTGAATGGAACCAGTTGCTTTGTAGAGACATCAGTTAGTCCTTTTTGAACCTGGTTGCCGAGCAGAGGTGCACTGAAGCTCTTTGAAATTTATGGGTTGAATAAGCTGCAATCCCAGTCACTCGGTAAGGAGAACTGTCCTTCCGGTTTTACACCCTGGAACACCATGGGAATGGTTTTCTATGATGTGAATTGGTTACGTTGCAAACAATAGAGGTCATTCTTGGAAATCGACATAATCAAGGGGATCAGTTAACATGGGTAGGTTTTGCTTTAGTTTTTCCCCGTGTAAATTTAAAGAAACTAATTGAATCTTCCAGTTCTAGTGCACAACTTTCTCAGCAAGTCGTGAACTTCTCTGCTATGTTTCGATCTCGTATGTATATTTTTCTTACCCTTTTCCTTATTCCAGTTGATTTGGCTATAACTGATATCGAATGACCTTGTTGAACTTGAGTAGGAATTTACTAGCAGGCCTGAATATTAATTTACTCCCACATTGCACTGCAGAATTGCTGAGAACGTTGGCGAATGTGGAAACAATAGGGTGGTTTGTGATCTTGGTTTTCTGTGTTAAATTTGTCCCTCATCGTTTTCTATTTCTTAGAGTACAATTATAACGTAGAAGTTGTGAGATTGAAGATTATGTTCTATTGTTCTTATGTTTTGGGGTTGCTCTGCCCTATTATTTTCTTCTATCGTTGTTCTTTTATTCAATTGTGATTTAAGCACATTATATTATACTATAACTAACGAGCTTTCTTCCAAATCATATACGATAAAAATAGTTGTTGATATATTTATGGAAGTATCATTAGAGTAAATTGAAATCCCATGTCCATCTATAAATGACGCTATTACATGGCCTAATCAGAAGTTTGGAAGCATGTTTGGCAAATTCGACCTGTTTCGACGTGTAAATGTTAGACAGTAAAATTGCCTTTCTCAGATGAGTTTATGTTCATCTGGAAATTTCTATATTATTCTCTATTGATGGCGTTTGATTTTCTTCCTTTATCTTCTATACGCTTCTGTTTGTAACTTGTAGCACACTAGACTGGAGCAGATATTACGAAGAATGACAATTGGAATTCAAAGTTTGCGGGAGTTTCAAGAATATCTCTATGAAGGCTCGAAAGTGCAGGTACGGAAGATTGCTTATTTGCTTTGA

mRNA sequence

ATGTGGCGCTCGTTTGGCCAGCAAGAGATTCATATGCCGATGGATGTAATCTATTTCTTGGAGAAGAAGAAACAGTGGACAAGAATCGAGTTTCGTATCTTTCTGATTTTGGGAGCGAAAGCTTGTAATCGTCAGGTGGAGGATGTTTCGGCTCGGTTAAACCAGCAAGAAAAGTTGGTTTGGTCCGGTATGTATTCACGGATCAGACTGTTGCTATGTTCATGTTATGGGGTTCGCCTGCATGAATTGTTGAATCCATATGAGTTTACTTTGAAGGCATTTAGTTCAAATTCTGTAATTCATATATGTCGTGCCTGA

Coding sequence (CDS)

ATGTGGCGCTCGTTTGGCCAGCAAGAGATTCATATGCCGATGGATGTAATCTATTTCTTGGAGAAGAAGAAACAGTGGACAAGAATCGAGTTTCGTATCTTTCTGATTTTGGGAGCGAAAGCTTGTAATCGTCAGGTGGAGGATGTTTCGGCTCGGTTAAACCAGCAAGAAAAGTTGGTTTGGTCCGGTATGTATTCACGGATCAGACTGTTGCTATGTTCATGTTATGGGGTTCGCCTGCATGAATTGTTGAATCCATATGAGTTTACTTTGAAGGCATTTAGTTCAAATTCTGTAATTCATATATGTCGTGCCTGA

Protein sequence

MWRSFGQQEIHMPMDVIYFLEKKKQWTRIEFRIFLILGAKACNRQVEDVSARLNQQEKLVWSGMYSRIRLLLCSCYGVRLHELLNPYEFTLKAFSSNSVIHICRA
Homology
The following BLAST results are available for this feature:
BLAST of Spg016941.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg016941.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg016941.1 vs.
Match NameE-valueIdentityDescription
BLAST of Spg016941.1 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 39..59

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg016941Spg016941gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg016941.1-cdsSpg016941.1-cds-scaffold9:43224105..43224151CDS
Spg016941.1-cdsSpg016941.1-cds-scaffold9:43224226..43224268CDS
Spg016941.1-cdsSpg016941.1-cds-scaffold9:43224422..43224648CDS
Spg016941.1-cdsSpg016941.1-cds-scaffold9:43226269..43226269CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg016941.1-three_prime_utrSpg016941.1-three_prime_utr-scaffold9:43226270..43226397three_prime_UTR
Spg016941.1-three_prime_utrSpg016941.1-three_prime_utr-scaffold9:43226713..43226752three_prime_UTR
Spg016941.1-three_prime_utrSpg016941.1-three_prime_utr-scaffold9:43227251..43227373three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg016941.1Spg016941.1-proteinpolypeptide