Spg015725.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg015725.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 17784011 .. 17785625 (+)
Sequence length	480
RNA-Seq Expression	Spg015725.1
Synteny	Spg015725.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGCTACCACACCCAATTGGTCAGATTAATATCAAGGGAAGAAGGTGCTTGGGCAGTTAATGGCGGGGAAGCCGAGAGTAAGTCCCTGGATGTATCTAATTCCGGCGATATTAATCAAGACCAATACTGTTGATGTAAGGTAGTTCAGTCCAGGCCATTCAGGAAAAGCTGGGTGACATCACCACCACGTCATGTCAAGATTTGAACGAAAGACTCGAGGATAGTGCAGGCATATCCAATCTATCTTTACTGCTTTCCAGCTGTATTTTCCAATTTTTGTTGCTCTTCAGCTTTTGTAAATTATTGAGTGCTTTCTTTTTATTTTGTCGATTACGAAAGAGATAATGATAAGTGGGGGTCCTGTCCCACCATATCTTATCGTAATCTTTTCTTTTCAAAAAGAAAGATTCCAAAGAGATAAGATGCCAGTCAAGGGTCCTGTCCTGTCGGCCACTCTTGGAATTATTTCTCGATGTACTCAATCTGTCGTTGACACGTGTAAAAACCTGTATAGTGATTTGATATCTGTGCTTGGCACGGGGCAAAATCAGATCTCTATATAAGGGCACGTCGTCCGACCCTCAATGGTATCAGAGCCTGAGGTTTGGGTTAGGTTTCATTTTGGTCCCTGAGGTTTCAAACTCAACAATTTAGTCTCTGAGGTTTGGTTTTAGTTTCATTCTAGGTCCTTCCGTTAGATTTTCTGTTAAAATATCACAGAAAGCTGATGTGACATCATTTTTTTATTAAAAAAATTATTTTCTTAATTTTTAAAATAAAATAATAATAAATTAATTTTAAAAATAATTTATTATTATTATTCCCTTTTATCATCTTCTCCATTGTCTTTCTCCTCCTTCATCTCTCTTCTTCAACCTTAGAACTACTACCAGCGACCGTCCGGCCGCTGTCGACCGCCGCTCGTCGGCCGACGAAGGTTCACTTTTTTTTTCCTTTTCTTCTCTTTTTTTCTTCTCCTCCTTCTCCCCTTTTTTCTTCTGATTCCCTCTTCCTCCCTTTTATTTTTTCTTTTACATTTAAAAAAAAATGAAGGGAAACCCTTCGAATCCAACACGAACTTGCCGGAAACGAAGGGGAAATCCCCTTCGATTCGATCTGAAACGAAGGGGAAATCCCCTTCGTTTCAGATCTAGAACGAAACCGTGGTTTCATTTCAGACCATTCGAGCTTGAAACGGCAAAGAGGGAGAGAGAGGGTCGTGTCTGCAATTGGGCGAAGCTTGACTGGGCGACCATTCAAGCTTGAAACGGCGGAACCTCATGGATCGACGACGGGCGGCGCAAGAGAGAGGGAGAGAGGTCGACGAACCTCGTGGATCTCGTGGGGGCGAATTCGAGTTGCTGGAGCGTGGGGCGCGAATCTGAGTTGCTGGAGTGTGGGTACTGGTCAGAGATTGCCGCGGGAGGTTTCAAAGTGGGTCACTTCTTCAACTGAAACAGGTAAAGAGAGGGAGAGATGAGATGAAGAGAGGGAGAGAGAAAGAAAGAAGAGAAAGAAAAAACATCTCCGACAGCGACGGCAGCGACGGTGGTGGTGGCGGCAGTGGCGGTGCCGACAGCTATGGTGATGGTGCAACTGTGGTGGTGGTTTAG

mRNA sequence

AAAGGCTACCACACCCAATTGGTCAGATTAATATCAAGGGAAGAAGGTGCTTGGGCAGTTAATGGCGGGGAAGCCGAGAATCTAGAACGAAACCGTGGTTTCATTTCAGACCATTCGAGCTTGAAACGGCAAAGAGGGAGAGAGAGGGTCGTGTCTGCAATTGGGCGAAGCTTGACTGGGCGACCATTCAAGCTTGAAACGGCGGAACCTCATGGATCGACGACGGGCGGCGCAAGAGAGAGGGAGAGAGGTCGACGAACCTCGTGGATCTCGTGGGGGCGAATTCGAGTTGCTGGAGCGTGGGGCGCGAATCTGAGTTGCTGGAGTGTAAAGAGAGGGAGAGATGAGATGAAGAGAGGGAGAGAGAAAGAAAGAAGAGAAAGAAAAAACATCTCCGACAGCGACGGCAGCGACGGTGGTGGTGGCGGCAGTGGCGGTGCCGACAGCTATGGTGATGGTGCAACTGTGGTGGTGGTTTAG

Coding sequence (CDS)

AAAGGCTACCACACCCAATTGGTCAGATTAATATCAAGGGAAGAAGGTGCTTGGGCAGTTAATGGCGGGGAAGCCGAGAATCTAGAACGAAACCGTGGTTTCATTTCAGACCATTCGAGCTTGAAACGGCAAAGAGGGAGAGAGAGGGTCGTGTCTGCAATTGGGCGAAGCTTGACTGGGCGACCATTCAAGCTTGAAACGGCGGAACCTCATGGATCGACGACGGGCGGCGCAAGAGAGAGGGAGAGAGGTCGACGAACCTCGTGGATCTCGTGGGGGCGAATTCGAGTTGCTGGAGCGTGGGGCGCGAATCTGAGTTGCTGGAGTGTAAAGAGAGGGAGAGATGAGATGAAGAGAGGGAGAGAGAAAGAAAGAAGAGAAAGAAAAAACATCTCCGACAGCGACGGCAGCGACGGTGGTGGTGGCGGCAGTGGCGGTGCCGACAGCTATGGTGATGGTGCAACTGTGGTGGTGGTTTAG

Protein sequence

KGYHTQLVRLISREEGAWAVNGGEAENLERNRGFISDHSSLKRQRGRERVVSAIGRSLTGRPFKLETAEPHGSTTGGARERERGRRTSWISWGRIRVAGAWGANLSCWSVKRGRDEMKRGREKERRERKNISDSDGSDGGGGGSGGADSYGDGATVVVV

Homology

The following BLAST results are available for this feature:

BLAST of Spg015725.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg015725.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg015725.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg015725.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..134

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg015725	Spg015725	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg015725.1-cds	Spg015725.1-cds-scaffold10:17784011..17784089	CDS
Spg015725.1-cds	Spg015725.1-cds-scaffold10:17785161..17785408	CDS
Spg015725.1-cds	Spg015725.1-cds-scaffold10:17785473..17785625	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg015725.1	Spg015725.1-protein	polypeptide