Spg015528.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg015528.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 14036041 .. 14036974 (-)
Sequence length	252
RNA-Seq Expression	Spg015528.1
Synteny	Spg015528.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAAAGGAGAGAGAGAAAGAGAGAGAAAGAGAGAGAGAGATTTTCTTATTTTTTTTAAAAAAAAATGTTAAGTAAAAGCTGTATATCGTTCACTCACATCAAACAAATCTGAAATGGGCGATTGGGTTAGATGAGTTTAAGAAGTAGAATCTTTAAACCCCCATTTTTATAGCCTTTCATTTCTGCTCACAGTTGGGGGTTCGTTCAACTTCAAGTGTCGGCCTTCTTTTTTTTTTTTTTTTTTTTTTTCTTTTTCCAAATCTCAAAACCTGATTCTTCTTCATAAATCTGAAAACGACCCATCTCTCAAATTCCTCTCTTCACAGTAATGGCCCGCTCTCCTCTTCTCTCAATTCTTCTTCTTTCTCTCTTCTTCGCTCTCTGTTTCACCAATGGTACAGATATATTTCTCTCTTCTTTTTTTTTTTTTTTTTTTTTTTTCCCTTTTTAATCCTTTAATTTAATGGGTTTTTCTTTTCTGCTTTGTTTTTGTGGTGAATCTCAAGGATTTGGAAGGAAAATGAGGATGGTGGAGGCTGATGACTCACACCATGCCTCCAGACTTCAGTTAAAGGTAAAGATTTTCTTTTTTTTATTTTTTTCTTGAAGATTTGAAAATTTTGTTTGTTGGGTTTTTTTTTTTATTTTATTTTAATAAAAATTGCAGGAAAGTGGAGGAAAATCGAGGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAACCAAACACCAACATAAAAGGTGGTTACGTTTCTCCACCTCCTCCCAGCCATGGATGAATTAATTCAATTATTAGTTGTTTAATATTTGTTGTCTTCTAATAATAACCGTCCGATATAAATTGAGGTACTTTGCTATTTCTCTCTCTCTTTCAATTTTTTTTTTTTTTTTGAGACATTCTCTCTCTTTCATTGTACCAAGATCACC

mRNA sequence

ATGGCCCGCTCTCCTCTTCTCTCAATTCTTCTTCTTTCTCTCTTCTTCGCTCTCTGTTTCACCAATGGATTTGGAAGGAAAATGAGGATGGTGGAGGCTGATGACTCACACCATGCCTCCAGACTTCAGTTAAAGGAAAGTGGAGGAAAATCGAGGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAACCAAACACCAACATAAAAGGTGGTTACGTTTCTCCACCTCCTCCCAGCCATGGATGA

Coding sequence (CDS)

ATGGCCCGCTCTCCTCTTCTCTCAATTCTTCTTCTTTCTCTCTTCTTCGCTCTCTGTTTCACCAATGGATTTGGAAGGAAAATGAGGATGGTGGAGGCTGATGACTCACACCATGCCTCCAGACTTCAGTTAAAGGAAAGTGGAGGAAAATCGAGGATGATGATGATGGAGACAATGGATTATTCAGATCCAGAACCAAACACCAACATAAAAGGTGGTTACGTTTCTCCACCTCCTCCCAGCCATGGATGA

Protein sequence

MARSPLLSILLLSLFFALCFTNGFGRKMRMVEADDSHHASRLQLKESGGKSRMMMMETMDYSDPEPNTNIKGGYVSPPPPSHG

Homology

[Close]

BLAST of Spg015528.1 vs. NCBI nr
Match: KAG6588364.1 (hypothetical protein SDJN03_16929, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022213.1 hypothetical protein SDJN02_15943 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 120.2 bits (300), Expect = 8.6e-24
Identity = 63/86 (73.26%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 1  MARSPLLSILLLSLFFALCFTNGFGRKMRMVEADDSHHASRLQLKESGG--KSRMMMMET 60
          M RSP LSILLLSL  A CFTNGFG KMRM+E  D+HH S ++LKESG   + RMMMMET
Sbjct: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSSVELKESGEEMRRRMMMMET 60

Query: 61 MDYSDPEPNTNIK-GGYVSPPPPSHG 84
          MDYSDPEPNTN+K GGYVSPPPP  G
Sbjct: 61 MDYSDPEPNTNVKGGGYVSPPPPLRG 86

[Close]

BLAST of Spg015528.1 vs. NCBI nr
Match: XP_011652234.1 (uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical protein Csa_002017 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 3.1e-21
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MARSPLLSI-LLLSLFFALCFTNGFGRKMRM-VEADDSHHASRLQLKESGGKSRMMMMET 60
          M RS  LSI LLLS    LCF+NGFGR +RM VE  DSHH SR+ L+ESG K RMM MET
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60

Query: 61 MDYSDPEPNTNIKGGYVS-PPPPSHG 84
          MDY+DPEPNTN+KGGYVS PPPP+HG
Sbjct: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 86

[Close]

BLAST of Spg015528.1 vs. NCBI nr
Match: PON65370.1 (hypothetical protein PanWU01x14_116840 [Parasponia andersonii])

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MARSPLLSILLLSLFFALCFTNGFGRK-MRMVEADDSHHASRLQLKESGGKSRMMMMETM 60
          M R    +ILL+SLF  L F++GFGR+ ++ VE     H S +++KE+GG     M+E  
Sbjct: 1  MGRRCFPTILLVSLFMLLFFSHGFGRRSLKTVEGHQEEHYSSVEVKENGGVKSREMIEVT 60

Query: 61 DYSDPEPNTNIKGGYVSPPPPS 82
          DYS+PEPNTN + GY+  PPPS
Sbjct: 61 DYSEPEPNTNPRAGYIFTPPPS 82

[Close]

BLAST of Spg015528.1 vs. NCBI nr
Match: XP_041004488.1 (uncharacterized protein LOC121249761 isoform X2 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 1  MARSPLLSILLLSLFFALCFTNGFGRK-MRMVEADDSHHASRLQLKESG-GKSRMMMMET 60
          M RS  L+ILL+S    LCF++GFGRK M  VE    H  S  +++ES  GKSR MM+E 
Sbjct: 1  MGRSCFLNILLVSSLLVLCFSHGFGRKVMETVE----HEDSTFRVEESTVGKSR-MMIEV 60

Query: 61 MDYSDPEPNTNIKGGYVSPPPP 81
          MDYSDP PNTN + GY+  PPP
Sbjct: 61 MDYSDPGPNTNPRSGYIFSPPP 77

[Close]

BLAST of Spg015528.1 vs. NCBI nr
Match: PON96377.1 (hypothetical protein TorRG33x02_079660 [Trema orientale])

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-09
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 1  MARSPLLSILLLSLFFALCFTNGFGRK-MRMVEADDSHHASRLQLKESGGKSRMMMMETM 60
          M R    +ILL+S F  L F++GFGR+ ++ VE       S +++KE+GG     M+E  
Sbjct: 1  MGRRCFPTILLVSFFVLLFFSHGFGRRSLKTVEGHQEESYSSVEVKENGGVKSREMIEVT 60

Query: 61 DYSDPEPNTNIKGGYVSPPPPSHG 84
          DYS+PEPNTN + GY+  PPPS G
Sbjct: 61 DYSEPEPNTNPRAGYIFTPPPSSG 84

[Close]

BLAST of Spg015528.1 vs. ExPASy TrEMBL
Match: A0A0A0LCS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 61/86 (70.93%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MARSPLLSI-LLLSLFFALCFTNGFGRKMRM-VEADDSHHASRLQLKESGGKSRMMMMET 60
          M RS  LSI LLLS    LCF+NGFGR +RM VE  DSHH SR+ L+ESG K RMM MET
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60

Query: 61 MDYSDPEPNTNIKGGYVS-PPPPSHG 84
          MDY+DPEPNTN+KGGYVS PPPP+HG
Sbjct: 61 MDYADPEPNTNVKGGYVSPPPPPNHG 86

[Close]

BLAST of Spg015528.1 vs. ExPASy TrEMBL
Match: A0A2P5CWE3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 1  MARSPLLSILLLSLFFALCFTNGFGRK-MRMVEADDSHHASRLQLKESGGKSRMMMMETM 60
          M R    +ILL+SLF  L F++GFGR+ ++ VE     H S +++KE+GG     M+E  
Sbjct: 1  MGRRCFPTILLVSLFMLLFFSHGFGRRSLKTVEGHQEEHYSSVEVKENGGVKSREMIEVT 60

Query: 61 DYSDPEPNTNIKGGYVSPPPPS 82
          DYS+PEPNTN + GY+  PPPS
Sbjct: 61 DYSEPEPNTNPRAGYIFTPPPS 82

[Close]

BLAST of Spg015528.1 vs. ExPASy TrEMBL
Match: A0A2P5FF06 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_079660 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 1  MARSPLLSILLLSLFFALCFTNGFGRK-MRMVEADDSHHASRLQLKESGGKSRMMMMETM 60
          M R    +ILL+S F  L F++GFGR+ ++ VE       S +++KE+GG     M+E  
Sbjct: 1  MGRRCFPTILLVSFFVLLFFSHGFGRRSLKTVEGHQEESYSSVEVKENGGVKSREMIEVT 60

Query: 61 DYSDPEPNTNIKGGYVSPPPPSHG 84
          DYS+PEPNTN + GY+  PPPS G
Sbjct: 61 DYSEPEPNTNPRAGYIFTPPPSSG 84

[Close]

BLAST of Spg015528.1 vs. ExPASy TrEMBL
Match: A0A200QHE3 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1753g22 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 0


Query: 1  MARSPLLSILLLSLFFALCFTNGFGRKMRMVEADDSHHASRLQLKESGGKSRMMMMETMD 60
          M RS  L  LL S   ALC + GFGRK+  +E +D    S + L+E+ GK+R  M+E MD
Sbjct: 1  MGRSYFLRFLLFSAVLALCLSQGFGRKLMELENED----SAVLLEENTGKAR-KMIEVMD 60

Query: 61 YSDPEPNTNIKGGYVSPPPPS 82
          Y+DPE NTN + GY+  PPPS
Sbjct: 61 YTDPEANTNPRTGYLFTPPPS 76

[Close]

BLAST of Spg015528.1 vs. ExPASy TrEMBL
Match: A0A0A0KSB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0


Query: 8  SILLLSLFFALCFTNGFGRKMRMVEADDSHHASRLQ----LKESGGKSRMMMMETMDYSD 67
          ++LLLS F  L FT+G   K+ M+E+    H S ++    LK  GGKSR MM+E MDY+D
Sbjct: 9  TLLLLSCFLLLSFTHGL--KVEMIES--LGHGSNVRISPSLKGIGGKSRKMMIEIMDYAD 68

Query: 68 PEPNTNIKGGYVSPPPP 81
          P PNTN + GY++PPPP
Sbjct: 69 PGPNTNTRSGYLNPPPP 81

The following BLAST results are available for this feature:

BLAST of Spg015528.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588364.1	8.6e-24	73.26	hypothetical protein SDJN03_16929, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011652234.1	3.1e-21	70.93	uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical ...	[more]
PON65370.1	2.4e-10	47.56	hypothetical protein PanWU01x14_116840 [Parasponia andersonii]	[more]
XP_041004488.1	2.7e-09	54.88	uncharacterized protein LOC121249761 isoform X2 [Juglans microcarpa x Juglans re...	[more]
PON96377.1	2.7e-09	45.24	hypothetical protein TorRG33x02_079660 [Trema orientale]	[more]

BLAST of Spg015528.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015528.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCS0	1.5e-21	70.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1	[more]
A0A2P5CWE3	1.2e-10	47.56	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE...	[more]
A0A2P5FF06	1.3e-09	45.24	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_079660 PE=4 SV...	[more]
A0A200QHE3	1.4e-08	49.38	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1753g22 PE=4 SV=1	[more]
A0A0A0KSB7	2.5e-08	50.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636600 PE=4 SV=1	[more]

BLAST of Spg015528.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..83
None	No IPR available	PANTHER	PTHR37908	TRANSMEMBRANE PROTEIN	coord: 1..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg015528	Spg015528	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg015528.1-three_prime_utr	Spg015528.1-three_prime_utr-scaffold10:14036041..14036188	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg015528.1-cds	Spg015528.1-cds-scaffold10:14036189..14036305	CDS
Spg015528.1-cds	Spg015528.1-cds-scaffold10:14036399..14036466	CDS
Spg015528.1-cds	Spg015528.1-cds-scaffold10:14036578..14036644	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg015528.1-five_prime_utr	Spg015528.1-five_prime_utr-scaffold10:14036645..14036974	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg015528.1	Spg015528.1-protein	polypeptide