Spg015387.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg015387.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	TRAF-like family protein
Location	scaffold10: 12579696 .. 12582401 (-)
Sequence length	873
RNA-Seq Expression	Spg015387.1
Synteny	Spg015387.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAAAGAAAAAAGAAAAGAGGAATACGAATAGACAATCTTGGACAGAGAGTATAAGACATGCAGTTGCCTTGCCTGTTCTTTCATGTGCCGAGGAAATTAACAGACGGATATGGAAGAGCAAAGGAAGAAGAATGACGTCATCTCTCCTTCTCCCACACCACACCCAGATTCTGCTTCTGGTATACACATTCTCTTTCTCTCTTCCTCTCTCTCAATATACATATTAGGGGTGTAAAAAAGTCGGGTCGGGTTGGTTGTACGGACAAACCGACTCGACCCGACACGTGTCGGTTGTACGGACAAACCGACCCGACTTGACCCGAACGGGTCGGGTCGGGTCGGGTCGACCCGACATGCTTCATCGAATCTTCTTCTTCCCTATCGAATCCTTCTCAAATCGTTCCCTTTTTTTTCTTTGGAACGGCGGCAAGGCAGCCGGCGAAAAAGTGGGCGGTGGAGGGGAGGAAATAGATCGGCGGAGAAGAAAAAAAAAAACAAAACCAGATGAAGAAGAAGAAACAAAAAAACAAAACCAGAAGAAGAAAAAAAAACCAGAACATAAACAAAATCAGAAGAAGATAAACAAAAAAACCAATTGCAAAAACAGATCGAAGGGGTTGAAAGCCTAATTTATGAAAAAACCCCTTATTGATTTCTTGATCTTACGCATGCAAAAACAGATCAAAGAGCTTCAAGCCTAATGTAGCCTAATTTTTAAGATAAACAAAAAACCCACATCCCCGTTCGTGCTTCGTGGTGGAAGAGACGACGGCGACCATTCGTGTTACGTGGTGGAAGAGACGACGGCGTCCGTTCGTGGGCTTCGTGGTGGAAGAGACGACGGTGGCCGTTCGTGCTTCGTGGTGGGAGAGACGACGGCGTCCGATCGTGGCTTCATGGTGGAAGAGACGACGGCGGCCGTTCGCGGCTTCGTGGTGGAAGAGACGACGGCGGCCGTTCGTGGCTTCGTTGAGCAGAGCGTCGAAGAACCCGAGAGAGATTGAGAGAGAGAAACTCGAGAGAGAACGAGAGGAGGCGGGCTGAAAAAAGAAAGAAACCCTAACTTTTCTATTTATGTTAAAAGCGAGAACCGAACCGAACCAGTCGGTTCGGTTCGGTTCGGCCTGTATTTATGTAAAAACCGAACCGAACCGACTCGGTTCGGTTCGGTTCGGGTATTTTCACCCCTAATACATATATTAGATTATTTATTTATTTTTAGAGTTATTTTAATTTCTATGGTTTATTTTTGCAGTTGTAAGGTCCAGCAGGGACCAAAAACCCCTGCATTATACTTTACAAATCTAATCCTTTTCGTTGCTGAAGGCCGCACTTGCTAGTTCCGAGCGTGACAGATATGAATCCCAGACCTTCAATGCTAGCGGTTATAAATGGTACATTATTATAACTTATACCTCCATTTGCTTCTTCTCATTTCTCACTATTTTTGTTTGCTTTGGCAGGAAATTAGCTCTCTATCCCAACGGACATGACAAAAGAAATGGTTCTGATCATATCTCCCTTTATTTGGTAATGGTTGAGTATGTTAATGTTATGTTGTGTTCACATTTCTTGTTTACGATCATCTCAAAGACAAATATTTGACAGTCCAAGGTAACAAAACCAAATTACTTAAAAGTAATTTCGAAACATGTTTTAATAATGTTTGCTTTCTTTGAGGTTTCAACTTACACTTTCATGTTACTTAATTCAGATGGGAGAGTACGGCGTTTTCATGCCATTATATAGGAAAGAGTGGGGGTTTGAAAAGTTGGTGTCACTTTGAGACTTTCAATGATGTTTCAAATGGGTTGTTGGTTGACGATAGTTGTGCATTTGGAATTGATGTTATTGTTATGAAATGTGAAGGGAATGGGGAGGTCATTTCCTTGATCAAGCAACCAAAAAACTACACATATACGTGGAAATTCACCAACTTTTCACAAAAAAAAATTGGATCTGTATGAATCCGATCCTTTTACCGTGGAAAACTACCGTTGGTATGTAAAATCTTTCCTACTTTTTACTACTTTTTGTTTTTACTCTAAATTGCAAATTAAAAGCTTTCCTTCAATCGTTTTTGGTCCACGTTTAATAGTACTTTTAAAATGGTGAAAATGTTTGTAACTACCCTAAAGCCTATTTTAAGATTTTCTTTATGTTTTTGGGTACATAGTCAAATGATATTGAGAATTCTCTAAACACTTAAGATGTACTCTTTTACTCTTCAAAAAAAAAAAAAAAAAAAAGTACTCTTTTAGAGGATCACTTAAATCAATGTTTCTTAAAAAAAATATTTTTAGGGGATGTGTTTTCATCTAAGATTATGTAAATGCTAGAAGTTTGATGGGTCTAAGGTCTTTTTCTAATCTGTTTCTCCATCATAGAAATCAGTATAAGAAGAAAGTTCCTCCAAAAGAAAAAAAGAGTCGTACTATTTAGATCACGTAATTCAAAAGTAAAACGGATATTGATTGAATTCATTTGATTCAATGAATCTGAAAACAAAAAAGAGAGCTTCAATTGCGCACTGAACATGCCCACATTTGAACCTCAAGTTTCAAAAGAATGAGTATATGTAACTTGTCTACAAATCTCAGCTACTTGCTAAAACAGATTTGTTGCAAGCTGTGGAGGAAATTGGTGTATCAATCAGGACTGATATGGATCCGTTGGGGGAAGGATTTGCTAATTGTTACTGA

mRNA sequence

ATGCAAAAGAAAAAAGAAAAGAGGAATACGAATAGACAATCTTGGACAGAGAGTATAAGACATGCAGTTGCCTTGCCTGTTCTTTCATGTGCCGAGGAAATTAACAGACGGATATGGAAGAGCAAAGGAAGAAGAATGACGTCATCTCTCCTTCTCCCACACCACACCCAGATTCTGCTTCTGATAAACAAAAAACCCACATCCCCGTTCGTGCTTCGTGGTGGAAGAGACGACGGCGACCATTCGTGTTACGTGGTGGAAGAGACGACGGCGTCCGTTCGTGGGCTTCGTGGTGGAAGAGACGACGGTGGCCGTTCGTGCTTCGTGGTGGGAGAGACGACGGCGTCCGATCGTGGCTTCATGGTGGAAGAGACGACGGCGGCCGTTCGCGGCTTCGTGGTGGAAGAGACGACGGCGGCCGTTCGTGGCTTCGTTGAGCAGAGCGCCGCACTTGCTAGTTCCGAGCGTGACAGATATGAATCCCAGACCTTCAATGCTAGCGGTTATAAATGGAAATTAGCTCTCTATCCCAACGGACATGACAAAAGAAATGGTTCTGATCATATCTCCCTTTATTTGGTAATGGTTGAGTATGTTAATGTTATATGGGAGAGTACGGCGTTTTCATGCCATTATATAGGAAAGAGTGGGGGTTTGAAAAGTTGGTGTCACTTTGAGACTTTCAATGATGTTTCAAATGGGTTGTTGGTTGACGATAGTTGTGCATTTGGAATTGATGTTATTGTTATGAAATGTGAAGGGAATGGGGAGCTACTTGCTAAAACAGATTTGTTGCAAGCTGTGGAGGAAATTGGTGTATCAATCAGGACTGATATGGATCCGTTGGGGGAAGGATTTGCTAATTGTTACTGA

Coding sequence (CDS)

ATGCAAAAGAAAAAAGAAAAGAGGAATACGAATAGACAATCTTGGACAGAGAGTATAAGACATGCAGTTGCCTTGCCTGTTCTTTCATGTGCCGAGGAAATTAACAGACGGATATGGAAGAGCAAAGGAAGAAGAATGACGTCATCTCTCCTTCTCCCACACCACACCCAGATTCTGCTTCTGATAAACAAAAAACCCACATCCCCGTTCGTGCTTCGTGGTGGAAGAGACGACGGCGACCATTCGTGTTACGTGGTGGAAGAGACGACGGCGTCCGTTCGTGGGCTTCGTGGTGGAAGAGACGACGGTGGCCGTTCGTGCTTCGTGGTGGGAGAGACGACGGCGTCCGATCGTGGCTTCATGGTGGAAGAGACGACGGCGGCCGTTCGCGGCTTCGTGGTGGAAGAGACGACGGCGGCCGTTCGTGGCTTCGTTGAGCAGAGCGCCGCACTTGCTAGTTCCGAGCGTGACAGATATGAATCCCAGACCTTCAATGCTAGCGGTTATAAATGGAAATTAGCTCTCTATCCCAACGGACATGACAAAAGAAATGGTTCTGATCATATCTCCCTTTATTTGGTAATGGTTGAGTATGTTAATGTTATATGGGAGAGTACGGCGTTTTCATGCCATTATATAGGAAAGAGTGGGGGTTTGAAAAGTTGGTGTCACTTTGAGACTTTCAATGATGTTTCAAATGGGTTGTTGGTTGACGATAGTTGTGCATTTGGAATTGATGTTATTGTTATGAAATGTGAAGGGAATGGGGAGCTACTTGCTAAAACAGATTTGTTGCAAGCTGTGGAGGAAATTGGTGTATCAATCAGGACTGATATGGATCCGTTGGGGGAAGGATTTGCTAATTGTTACTGA

Protein sequence

MQKKKEKRNTNRQSWTESIRHAVALPVLSCAEEINRRIWKSKGRRMTSSLLLPHHTQILLLINKKPTSPFVLRGGRDDGDHSCYVVEETTASVRGLRGGRDDGGRSCFVVGETTASDRGFMVEETTAAVRGFVVEETTAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVEYVNVIWESTAFSCHYIGKSGGLKSWCHFETFNDVSNGLLVDDSCAFGIDVIVMKCEGNGELLAKTDLLQAVEEIGVSIRTDMDPLGEGFANCY

Homology

[Close]

BLAST of Spg015387.1 vs. NCBI nr
Match: XP_022146380.1 (probable inactive serine/threonine-protein kinase fnkC [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-26
Identity = 65/124 (52.42%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMV- 197
           T  ++ F    AALASS RDRYESQ FNA GYKWKLA+YPNG  KRNG+DHISLYLV   
Sbjct: 21  TLQIQSFSLLKAALASSNRDRYESQIFNAGGYKWKLAVYPNGDVKRNGADHISLYLVKAD 80

Query: 198 EYVNVIWESTAFSCHYIGKSGGLKSWCHFETFNDVSNGLLVDDSCAFGIDVIVMKCEGNG 257
           + +N          H +    G +     +TFND SNG +V D C FG+DV+VMKC+G G
Sbjct: 81  DDINPCSHGKVRRFHAMKAEWGFEKLISLDTFNDSSNGFVVGDCCGFGVDVVVMKCDGKG 140

Query: 258 ELLA 261
           E+++
Sbjct: 141 EVVS 144

[Close]

BLAST of Spg015387.1 vs. NCBI nr
Match: XP_022146381.1 (ubiquitin carboxyl-terminal hydrolase 13-like [Momordica charantia])

HSP 1 Score: 122.1 bits (305), Expect = 7.9e-24
Identity = 67/145 (46.21%), Postives = 82/145 (56.55%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVE 197
           T  ++ F     ALA+S  DRYESQ FNA GYKWKLA+YPNG  KRNGSDHISLYLV  E
Sbjct: 30  TLQIQSFSLLKTALAASNCDRYESQIFNAGGYKWKLAVYPNGDVKRNGSDHISLYLVKAE 89

Query: 198 ------YVNVIWESTAFS----------------CHYIGKSGGLKSWCHFETFNDVSNGL 257
                  VNV++    +                  H I      +     ETFND SNG 
Sbjct: 90  DGIPTSEVNVVFTFLVYDNLNDKYLAVQDEKVRRFHSIQTEWEFEKLISLETFNDSSNGF 149

Query: 258 LVDDSCAFGIDVIVMKCEGNGELLA 261
           LV D CAFG+D++V KC+G GE+++
Sbjct: 150 LVGDCCAFGVDIVVKKCDGKGEVVS 174

[Close]

BLAST of Spg015387.1 vs. NCBI nr
Match: XP_022146382.1 (uncharacterized protein LOC111015610 [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 3.9e-23
Identity = 65/145 (44.83%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVE 197
           T  ++ F     ALA+S RDRYES  F+ +G+KWKLA+YP+G  KRNGS+HISLYLV  E
Sbjct: 66  TLQIQPFSLLKTALATSSRDRYESPIFSVAGFKWKLAVYPSGDVKRNGSNHISLYLVTAE 125

Query: 198 ----------------YVNV------IWESTAFSCHYIGKSGGLKSWCHFETFNDVSNGL 257
                           Y N+      + +      H + K  G +     ETFND SNG 
Sbjct: 126 DDIPTLDLTVVFTILVYDNLRDNYLAVLDGKVRRFHAMKKEWGFEKLVSLETFNDSSNGF 185

Query: 258 LVDDSCAFGIDVIVMKCEGNGELLA 261
           LVDD CAFG+D+ VMKC+G GE L+
Sbjct: 186 LVDDCCAFGVDIFVMKCDGKGEALS 210

[Close]

BLAST of Spg015387.1 vs. NCBI nr
Match: KAA0050214.1 (MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa] >TYJ98194.1 MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 3.3e-22
Identity = 66/147 (44.90%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVE 197
           T  ++ F    AALA+S  DRYESQ FN   Y WKLA+YPNG ++RNGS+HISLYLV  E
Sbjct: 67  TLQIQSFSLLKAALAASNCDRYESQIFNVGCYSWKLAVYPNGDEERNGSNHISLYLVKAE 126

Query: 198 YVNV------IW-----------------ESTAFSCHYIGKSGGLKSWCHFETFNDVSNG 257
             N       +W                 +      H + K  G +     +TFND SNG
Sbjct: 127 DENATTSEVNVWFTFLVYDTLKDRYMTFQDGKVRRFHAMKKEWGFEKLVSLDTFNDTSNG 186

Query: 258 LLVDDSCAFGIDVIVMK-CEGNGELLA 261
           LLVDD CAFG+D+IVMK  +G GE+L+
Sbjct: 187 LLVDDCCAFGVDIIVMKFYDGKGEVLS 213

[Close]

BLAST of Spg015387.1 vs. NCBI nr
Match: XP_038874970.1 (uncharacterized protein LOC120067490 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 9.7e-22
Identity = 68/139 (48.92%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 147 QSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVE--------- 206
           ++A  ASS R+RYESQ F A GYKWKLALYPNG  KRN ++HISLYLV  E         
Sbjct: 49  KAAVAASSIRNRYESQIFKAGGYKWKLALYPNGDFKRNVANHISLYLVSAEDEISSSGLE 108

Query: 207 ---------YVNV------IWESTAFSCHYIGKSGGLKSWCHFETFNDVSNGLLVDDSCA 261
                    Y N+      I +      H I K  G +     +TFND SNGLLVDD CA
Sbjct: 109 IKVMIKFLVYDNLKDRYWTIQDGKVRCFHAIKKEWGFEKLVSLDTFNDTSNGLLVDDCCA 168

[Close]

BLAST of Spg015387.1 vs. ExPASy TrEMBL
Match: A0A6J1CX47 (probable inactive serine/threonine-protein kinase fnkC OS=Momordica charantia OX=3673 GN=LOC111015608 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.3e-27
Identity = 65/124 (52.42%), Postives = 81/124 (65.32%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMV- 197
           T  ++ F    AALASS RDRYESQ FNA GYKWKLA+YPNG  KRNG+DHISLYLV   
Sbjct: 21  TLQIQSFSLLKAALASSNRDRYESQIFNAGGYKWKLAVYPNGDVKRNGADHISLYLVKAD 80

Query: 198 EYVNVIWESTAFSCHYIGKSGGLKSWCHFETFNDVSNGLLVDDSCAFGIDVIVMKCEGNG 257
           + +N          H +    G +     +TFND SNG +V D C FG+DV+VMKC+G G
Sbjct: 81  DDINPCSHGKVRRFHAMKAEWGFEKLISLDTFNDSSNGFVVGDCCGFGVDVVVMKCDGKG 140

Query: 258 ELLA 261
           E+++
Sbjct: 141 EVVS 144

[Close]

BLAST of Spg015387.1 vs. ExPASy TrEMBL
Match: A0A6J1CZ69 (ubiquitin carboxyl-terminal hydrolase 13-like OS=Momordica charantia OX=3673 GN=LOC111015609 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-24
Identity = 67/145 (46.21%), Postives = 82/145 (56.55%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVE 197
           T  ++ F     ALA+S  DRYESQ FNA GYKWKLA+YPNG  KRNGSDHISLYLV  E
Sbjct: 30  TLQIQSFSLLKTALAASNCDRYESQIFNAGGYKWKLAVYPNGDVKRNGSDHISLYLVKAE 89

Query: 198 ------YVNVIWESTAFS----------------CHYIGKSGGLKSWCHFETFNDVSNGL 257
                  VNV++    +                  H I      +     ETFND SNG 
Sbjct: 90  DGIPTSEVNVVFTFLVYDNLNDKYLAVQDEKVRRFHSIQTEWEFEKLISLETFNDSSNGF 149

Query: 258 LVDDSCAFGIDVIVMKCEGNGELLA 261
           LV D CAFG+D++V KC+G GE+++
Sbjct: 150 LVGDCCAFGVDIVVKKCDGKGEVVS 174

[Close]

BLAST of Spg015387.1 vs. ExPASy TrEMBL
Match: A0A6J1CZF7 (uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015610 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-23
Identity = 65/145 (44.83%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVE 197
           T  ++ F     ALA+S RDRYES  F+ +G+KWKLA+YP+G  KRNGS+HISLYLV  E
Sbjct: 66  TLQIQPFSLLKTALATSSRDRYESPIFSVAGFKWKLAVYPSGDVKRNGSNHISLYLVTAE 125

Query: 198 ----------------YVNV------IWESTAFSCHYIGKSGGLKSWCHFETFNDVSNGL 257
                           Y N+      + +      H + K  G +     ETFND SNG 
Sbjct: 126 DDIPTLDLTVVFTILVYDNLRDNYLAVLDGKVRRFHAMKKEWGFEKLVSLETFNDSSNGF 185

Query: 258 LVDDSCAFGIDVIVMKCEGNGELLA 261
           LVDD CAFG+D+ VMKC+G GE L+
Sbjct: 186 LVDDCCAFGVDIFVMKCDGKGEALS 210

[Close]

BLAST of Spg015387.1 vs. ExPASy TrEMBL
Match: A0A5D3BGH9 (MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00850 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-22
Identity = 66/147 (44.90%), Postives = 83/147 (56.46%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVE 197
           T  ++ F    AALA+S  DRYESQ FN   Y WKLA+YPNG ++RNGS+HISLYLV  E
Sbjct: 67  TLQIQSFSLLKAALAASNCDRYESQIFNVGCYSWKLAVYPNGDEERNGSNHISLYLVKAE 126

Query: 198 YVNV------IW-----------------ESTAFSCHYIGKSGGLKSWCHFETFNDVSNG 257
             N       +W                 +      H + K  G +     +TFND SNG
Sbjct: 127 DENATTSEVNVWFTFLVYDTLKDRYMTFQDGKVRRFHAMKKEWGFEKLVSLDTFNDTSNG 186

Query: 258 LLVDDSCAFGIDVIVMK-CEGNGELLA 261
           LLVDD CAFG+D+IVMK  +G GE+L+
Sbjct: 187 LLVDDCCAFGVDIIVMKFYDGKGEVLS 213

[Close]

BLAST of Spg015387.1 vs. ExPASy TrEMBL
Match: A0A6J1CXZ0 (ubiquitin carboxyl-terminal hydrolase 12-like OS=Momordica charantia OX=3673 GN=LOC111015607 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-21
Identity = 65/140 (46.43%), Postives = 77/140 (55.00%), Query Frame = 0


Query: 138 TAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGS-DHISLYLVMV 197
           T  ++ F     AL  S+ DRYES+ FNA GYKWKLA+YP G  KRNGS DHISLYLV  
Sbjct: 36  TLQIQSFSLLKTALVRSDCDRYESRIFNAGGYKWKLAMYPTGDVKRNGSHDHISLYLVKA 95

Query: 198 E------YVNVIWESTAFSC----------------HYIGKSGGLKSWCHFETFNDVSNG 255
           E       VNV++    +                  H I    G +     +TFND SNG
Sbjct: 96  EDDIPTSEVNVVFTFLVYDSLKDKYLAVQDGIVRRFHAIKTEWGFEKLISLDTFNDSSNG 155

[Close]

BLAST of Spg015387.1 vs. TAIR 10
Match: AT3G17380.1 (TRAF-like family protein )

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-16
Identity = 48/141 (34.04%), Postives = 70/141 (49.65%), Query Frame = 0


Query: 145 VEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVEYVNVI-- 204
           +E  + L     +RYE+++F A GYKWKL LYPNG+  +N  DH+S+YL + +  ++   
Sbjct: 26  IESFSLLTKHAIERYETESFEAGGYKWKLVLYPNGNKSKNTKDHVSVYLSLADSSSLSPG 85

Query: 205 WESTAF---------------------SCHYIGKSGGLKSWCHFETFNDVSNGLLVDDSC 261
           WE  A                        H + +  G   +    TF+D SNG L++D+C
Sbjct: 86  WEVYAVFRLYLLDQNKDNYLILQGNERRFHSVKREWGFDKFIPTGTFSDASNGYLMEDTC 145

[Close]

BLAST of Spg015387.1 vs. TAIR 10
Match: AT3G20360.1 (TRAF-like family protein )

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-09
Identity = 51/198 (25.76%), Postives = 83/198 (41.92%), Query Frame = 0


Query: 90  TASVRGLRGGRDDGGRSCFVVGETTASDRGFMVEETTAAVRGFVVEETTAAVRGFVEQSA 149
           T+S  G    +++G +  F   + ++ D    +  T   +R       +  +  F   + 
Sbjct: 23  TSSFAGPVPNQENGSQKIFPT-QISSRDSKVSLSSTVKGLRERPPSSYSLKMESF---NT 82

Query: 150 ALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVM--------VEYVNV 209
            + S   +RYES+ F    Y W L +YP G+   NG+ HISLY+V+         E V+V
Sbjct: 83  LMKSVYTERYESRPFRVGRYNWTLVVYPKGNKNDNGTGHISLYVVLDNSTLTSQSEEVHV 142

Query: 210 ----------------IWESTAFSCHYIGKSGGLKSWCHFETFNDVSNGLLVD-DSCAFG 263
                           I ++  +    I +  G        TFN++ NG L D D C FG
Sbjct: 143 DLRFYVFNKKETKYFTIQDTDVWRFSAIKRMWGFSKVLPLITFNNLKNGYLYDVDHCEFG 202

[Close]

BLAST of Spg015387.1 vs. TAIR 10
Match: AT2G15710.1 (TRAF-like family protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.9e-09
Identity = 39/122 (31.97%), Postives = 55/122 (45.08%), Query Frame = 0


Query: 157 DRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLYLVMVEYVNVIWEST------AFSC 216
           D+YES  F + GY W+L +YP G++K  GS  IS+Y   VE+ N    ST      A+  
Sbjct: 114 DKYESHRFLSGGYNWRLVIYPKGNEKDKGSGFISMY---VEFDNTKVSSTSPMEVFAYII 173

Query: 217 HYIGKS----------------------GGLKSWCHFETFNDVSNGLLVD-DSCAFGIDV 250
            ++                          GL      ETFND+ NG   + + C FG+DV
Sbjct: 174 FFVYNKKENKYFTIQDVEVKRFNALRTVWGLSQVLSLETFNDLENGYTFEGEQCEFGVDV 232

[Close]

BLAST of Spg015387.1 vs. TAIR 10
Match: AT5G26290.1 (TRAF-like family protein )

HSP 1 Score: 57.4 bits (137), Expect = 2.2e-08
Identity = 38/125 (30.40%), Postives = 56/125 (44.80%), Query Frame = 0


Query: 148 SAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDHISLY--LVMVEYVNVIWE- 207
           S ++  +  + YES  F A GYKW+L LY NG++K  G DH+SLY  +V  E + V WE 
Sbjct: 61  SFSIIRTRPEPYESSVFEAVGYKWRLVLYVNGNEKDGGKDHVSLYAKIVETESLPVGWEV 120

Query: 208 ------------------STAFSCHYIGKSGGLKSWCHFETFNDVSNGLLVDDSCAFGID 252
                              T    +   K  G        TF D ++G    D+  FG +
Sbjct: 121 NVDLKLFVYNGKLNKYLIVTVKRYNNATKELGYGQLIPQSTFYDGNDGYREQDTGTFGAE 180

[Close]

BLAST of Spg015387.1 vs. TAIR 10
Match: AT4G01390.1 (TRAF-like family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-07
Identity = 36/132 (27.27%), Postives = 62/132 (46.97%), Query Frame = 0


Query: 129 VRGFVVEETTAAVRGFVEQSAALASSERDRYESQTFNASGYKWKLALYPNGHDKRNGSDH 188
           VR F V   TA +   ++  + L     ++ ES  F+ +G+KWKL+++PNGH    G+ +
Sbjct: 11  VRLFKVRHATAHMFK-IDHFSLLRKHGIEKVESSVFDLAGHKWKLSVHPNGHTNAKGTHY 70

Query: 189 ISLY--------------LVMVEYVNVIWESTAFSCHYIGKSGGLKSWCHFETFNDV-SN 246
           +SLY              L+ V  +   W +     +   +  G + +  F +  D+  N
Sbjct: 71  VSLYLMNQAPVYDTLTYELLAVSQLEPKWHTHGRDEYETNEELGSEGFREFISLVDLKKN 130

The following BLAST results are available for this feature:

BLAST of Spg015387.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146380.1	1.7e-26	52.42	probable inactive serine/threonine-protein kinase fnkC [Momordica charantia]	[more]
XP_022146381.1	7.9e-24	46.21	ubiquitin carboxyl-terminal hydrolase 13-like [Momordica charantia]	[more]
XP_022146382.1	3.9e-23	44.83	uncharacterized protein LOC111015610 [Momordica charantia]	[more]
KAA0050214.1	3.3e-22	44.90	MATH domain and coiled-coil domain-containing protein [Cucumis melo var. makuwa]...	[more]
XP_038874970.1	9.7e-22	48.92	uncharacterized protein LOC120067490 [Benincasa hispida]	[more]

BLAST of Spg015387.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg015387.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CX47	8.3e-27	52.42	probable inactive serine/threonine-protein kinase fnkC OS=Momordica charantia OX...	[more]
A0A6J1CZ69	3.8e-24	46.21	ubiquitin carboxyl-terminal hydrolase 13-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1CZF7	1.9e-23	44.83	uncharacterized protein LOC111015610 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5D3BGH9	1.6e-22	44.90	MATH domain and coiled-coil domain-containing protein OS=Cucumis melo var. makuw...	[more]
A0A6J1CXZ0	5.2e-21	46.43	ubiquitin carboxyl-terminal hydrolase 12-like OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Spg015387.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17380.1	2.2e-16	34.04	TRAF-like family protein	[more]
AT3G20360.1	1.2e-09	25.76	TRAF-like family protein	[more]
AT2G15710.1	5.9e-09	31.97	TRAF-like family protein	[more]
AT5G26290.1	2.2e-08	30.40	TRAF-like family protein	[more]
AT4G01390.1	1.5e-07	27.27	TRAF-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008974	TRAF-like	GENE3D	2.60.210.10	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	coord: 140..211 e-value: 1.9E-11 score: 46.0
None	No IPR available	PANTHER	PTHR46162:SF40	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 12-LIKE	coord: 151..256
None	No IPR available	PANTHER	PTHR46162	TRAF-LIKE FAMILY PROTEIN	coord: 151..256
None	No IPR available	SUPERFAMILY	49599	TRAF domain-like	coord: 155..252
IPR002083	MATH/TRAF domain	PROSITE	PS50144	MATH	coord: 138..247 score: 11.722881
IPR002083	MATH/TRAF domain	CDD	cd00121	MATH	coord: 157..247 e-value: 4.25394E-9 score: 51.611

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg015387	Spg015387	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg015387.1-cds	Spg015387.1-cds-scaffold10:12579696..12579797	CDS
Spg015387.1-cds	Spg015387.1-cds-scaffold10:12580518..12580683	CDS
Spg015387.1-cds	Spg015387.1-cds-scaffold10:12580842..12580934	CDS
Spg015387.1-cds	Spg015387.1-cds-scaffold10:12581004..12581071	CDS
Spg015387.1-cds	Spg015387.1-cds-scaffold10:12581418..12581678	CDS
Spg015387.1-cds	Spg015387.1-cds-scaffold10:12582219..12582401	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg015387.1	Spg015387.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding