Spg014167.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg014167.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold3: 46416515 .. 46416718 (-)
Sequence length204
RNA-Seq ExpressionSpg014167.1
SyntenySpg014167.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATCTCCGGCACTTCCAAGATCTTCGCCGTGGTTGTCTTCGCCGCCGTGGCGATCTTCTCGGCCGTCGGTTTTGCACAGGAAGCTCCGGCACCGGCGCCAGAGCTCGACCGAGGAGCGGCGGCTCTGCCTGCGGCGGCCTCCGTGGCTCTGCTCTGTGGTTCCTTCCTCCTCTCTCTTCCTGCGCTTTTGAAGCTCTAA

mRNA sequence

ATGGCGATCTCCGGCACTTCCAAGATCTTCGCCGTGGTTGTCTTCGCCGCCGTGGCGATCTTCTCGGCCGTCGGTTTTGCACAGGAAGCTCCGGCACCGGCGCCAGAGCTCGACCGAGGAGCGGCGGCTCTGCCTGCGGCGGCCTCCGTGGCTCTGCTCTGTGGTTCCTTCCTCCTCTCTCTTCCTGCGCTTTTGAAGCTCTAA

Coding sequence (CDS)

ATGGCGATCTCCGGCACTTCCAAGATCTTCGCCGTGGTTGTCTTCGCCGCCGTGGCGATCTTCTCGGCCGTCGGTTTTGCACAGGAAGCTCCGGCACCGGCGCCAGAGCTCGACCGAGGAGCGGCGGCTCTGCCTGCGGCGGCCTCCGTGGCTCTGCTCTGTGGTTCCTTCCTCCTCTCTCTTCCTGCGCTTTTGAAGCTCTAA

Protein sequence

MAISGTSKIFAVVVFAAVAIFSAVGFAQEAPAPAPELDRGAAALPAAASVALLCGSFLLSLPALLKL
Homology
[Close]
BLAST of Spg014167.1 vs. NCBI nr
Match: KAG6595145.1 (hypothetical protein SDJN03_11698, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 54/71 (76.06%), Postives = 58/71 (81.69%), Query Frame = 0 

Query: 1  MAISGTSKIFAVVVFAAVAIFSAVGFAQEA----PAPAPELDRGAAALPAAASVALLCGS 60
          MAISGTS +F VVVFA VA+FSAV  AQE+    PAPAP LDRGAAALPAAAS+ALL  S
Sbjct: 1  MAISGTSTVFYVVVFAIVAVFSAVASAQESPVPTPAPAPVLDRGAAALPAAASMALLFAS 60

Query: 61 FLLSLPALLKL 68
          F LSLPALLKL
Sbjct: 61 FFLSLPALLKL 71

[Close]
BLAST of Spg014167.1 vs. NCBI nr
Match: KGN45142.1 (hypothetical protein Csa_015584 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-06
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 7  SKIFAVVVFAAVAIFSAVGFAQEAPAPAPELDRGAA-ALPAAASVALLCGSFLLSLPALL 66
          SKI  VV  A VA+FSA+  AQEAPAPAP LDRGAA +LP A S+ALL  SF  SLPALL
Sbjct: 4  SKISPVVFLALVALFSALVSAQEAPAPAPGLDRGAASSLPVATSMALLFASFFFSLPALL 63

Query: 67 KL 68
          KL
Sbjct: 64 KL 65

[Close]
BLAST of Spg014167.1 vs. ExPASy TrEMBL
Match: A0A0A0K9T6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428790 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-06
Identity = 43/62 (69.35%), Postives = 47/62 (75.81%), Query Frame = 0 

Query: 7  SKIFAVVVFAAVAIFSAVGFAQEAPAPAPELDRGAA-ALPAAASVALLCGSFLLSLPALL 66
          SKI  VV  A VA+FSA+  AQEAPAPAP LDRGAA +LP A S+ALL  SF  SLPALL
Sbjct: 4  SKISPVVFLALVALFSALVSAQEAPAPAPGLDRGAASSLPVATSMALLFASFFFSLPALL 63

Query: 67 KL 68
          KL
Sbjct: 64 KL 65

The following BLAST results are available for this feature:
BLAST of Spg014167.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595145.12.1e-1276.06hypothetical protein SDJN03_11698, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN45142.12.9e-0669.35hypothetical protein Csa_015584 [Cucumis sativus][more]
BLAST of Spg014167.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg014167.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9T61.4e-0669.35Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G428790 PE=4 SV=1[more]
BLAST of Spg014167.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg014167Spg014167gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg014167.1-cdsSpg014167.1-cds-scaffold3:46416515..46416718CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg014167.1Spg014167.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane