Spg014073.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTAGCGAAATGCCGACACCACTGGATGACATCGAAAATTCCTAGCAACACCAACATCAACCATGTGACACCAGAAGTTCTTCGCAATGTCAATGCCACACTTGTAGCATTGGCATTGCTAGGAACTGCCGACACCGACCAATCTAGCATCGACGTTTCTTCGAATTGTCGACATCACACTTTAACGTCGACAATTTTTGGAAATGTTGACACCAAATGGTTGGAGTCGACAGTACTTGTGTTTTTTTTTTTTTTTTCTTGTAAGTTTGAATATTTTTTGTTCAGAATTTCATCATAATTTGAATATTATTGTAGTTCTTAAAACGAGTTGTATACAAAATAAATCAAATAAAACTTGGTACTAAACCAAATTTAGTCTTCACAAATTTGTTCGTAAATTTGAATACAAGATAAATCTAAAGTTATGTAGAAAAAAAATCTCTCAAGTTCTTGTCAGCTCCATGTCATCTCCTTGGAAAACAACTTTCGAGAATTATATTGACCCAACCCACCTTGAAATAATTAGGAAAATCAAAGTTTATAAGCATAAGATCAAAACTATTAAGCACATACCAACTAAGGGTGTGTTTGGTTTAACTTTTCAAATGTTTAATTTTGGAAAAAAATCATTTTGAAAAAATTTCTAATGTTTGGCAACCATTTAAAATGACTTGTTAGCAAATGAGATTGACAAATAAACCATTTTGAGAGAAACACTTGAAACCAACTTTTTTAAAAAGAGTTTTAAGTAAACAATAACTTGTGTATAACAACACCTATGAGGAAATGCAACCAAACATATGAGTGTTTAAATTCTAAACAATTTTTATACCAAATGTTTTTTAAAAAATGTATTCTTGAAAAACATTTAAACTAAAATGTATTCCAAACGGACCCTAAATTGAACATAACAAAACGGTGTACAGTTCAAGGAGAGCCTAGGTCAATATCTTGGCTTACCATCGCAAAACGGGCGCAATAAAAAAGAGATTTTTGAGAATATTAAGGATCGAGTTTGGAAAGCACTCCAAGGATGGAAAGGAAAGTTCTTCTCAGCTGCAGGCCGAGAAACTCTTATTAAATTAGTGGCTCAAGCTATCTCAAATTATGCTATGAGCTGTTTCAAATTCCCTACGTCCTTATGTAATGATTTAAATTCTCTTTGTGCTAGGTTTTGGTGGGGGTCGACTGAAGAAGGAAGGAAGATTCATTGGCGAAGCTGGAAAAGATTGTGCCATAATAAAGTTCAGGGTGGGATGGGTTTTCGAGACCTTAGCATTTTCAATCAGGCTATGTTAGCAAAACAAAGCTGGAGGATTGTTCAACACCCAAATAGTCTCATGGCTAAAGTTCTCAGGGCAGATATTTCAAAACAGGGCATTTTCTTATAGCAAAGTTGGGGAATAACCCATCTTATACGTGGAGAAGTATCATTTGGGGCAGAGACCTCTTTAAGAAGGGTTATAGATGGAAAATCGGGAGTGGTATCGGAATTGAAGCTTCAAAGGACCCTTGGATTCCGAAGGAAGGATCAAGTATTCCTATTAGAGTTGACCCTTCTGTGCAAAGGTTTCACTGTTGGTCAATTCATAACCCCTTAGGGAGAATGGAATGAAGATTTAGTCCGAAGATCTTTCCTGGAAAGTGATGCTCGGGCCTTCTTAGCATTCCAATCAACCCACTGCAAAAGGAAGACACGATTCTTTAGGACCTTGATCCAAAGGGTTTTTTCCCTGTCAAGAGTGCTTGTAGACTAGGGGTGCAGTTACAAAATTTGGAGGCGACATCCACTTCAAACTCCACTTGTCAAGAAGCCTTATGGAAGAAATTTTGGAATATCAGTCTTCCTCCTAAAATCAAGATCTATGGTTGGCGGATCTATAATGATATCTTGCCTACCATTTCCAATCTGATTTCTAGAGGAGTAGATATTAATCCAATGTGTTATCTTTGCAGGAAAAAACTTGAGATGGCAAATCATCTGTTCTGGGAATGTAAAATGGTAAGAGGTCTTTGGTTGAAATTCTGCCCTTTTACTAATGAAATCTTTTTTGGTGACAGATCTGGATGGACTCCTTTGGATTACTGTGAAGGAATTTGGAAGGCAGACCGAGGAAAAGAACTAGAGGAAGACAGAATGGCTAGATCTCTTGTGGTGTGTTGGCAAATTTGGAATCACAGAAATGAAGTTCTTCACAACAAAAAACAGCCAGACATTCAGCAATTGGAGCAGAAGATCACCAATTATTGTTCAGAGTTCCTAAGGAATGAAATTCCTTACCTGGAGGTGCAGACGAACTCGAGCTTGAGGCGGTCTGCTGCAACAGATCAAATCAACGCCTGGATTCCTTTCGCCTGAAGGGATTTTGAAGCTGAACTGCGACACCACTTGGTCTGAAACACAACAGCGAGGTGGTATTGGGTGGATTCTTCGATCTCCGAATGGCACCCCTCTCTGCGCGAGTTACAAATGTGTGAGAAAACGGTGGAAGGTCAGCTGGTTAGAGGTTGCGGCAATTTGTGAAGGTCTGAAAATCATCCCCCGTGATTCTCCTCTGGTTCGTGTTGAGTCGGATGCGATGAATGTGGTTCGGCTGCTCAACGATGAAGTTCAGGACATTTCAGAGCTGGCGATTTTCGTGATGGAGGCTAAATCCCTCATCTCTGCTATTATTCCCGTGGAAAAGGTTGCATATGCCCTAAGATTCCATAATGGTGTGGCACATTATCTGGCCCAACAAGCTGTTTCTTTAAATTCTTCTGAGTTTTGGTCCAATTCATTTCCTAATTGGTTTTTAGTCTTAAATGCATCTGATATTGGATATGTAGTTAATACTTACGGGGGAGCCTGTCCCATAGGTAATTTATCTTTGGGAGCTGTTTCTTAA ATGCTAGCGAAATGCCGACACCACTGGATGACATCGAAAATTCCTAGCAACACCAACATCAACCATGTGACACCAGAAGTTCTTCGCAATGTCAATGCCACACTTGTAGCATTGGCATTGCTAGGAACTGCCGACACCGACCAATCTAGCATCGACGTTTCTTCGAATTGTCGACATCACACTTTAACGTCGACAATTTTTGGAAATGTTGACACCAAATGGTTGGAGTCGACAGTACTTGTGAAAAAACTTGAGATGGCAAATCATCTGTTCTGGGAATGTAAAATGGTAAGAGGTCTTTGGTTGAAATTCTGCCCTTTTACTAATGAAATCTTTTTTGGTGACAGATCTGGATGGACTCCTTTGGATTACTGTGAAGGAATTTGGAAGGCAGACCGAGGAAAAGAACTAGAGGAAGACAGAATGGCTAGATCTCTTGTGGTGTGTTGGCAAATTTGGAATCACAGAAATGAAGTTCTTCACAACAAAAAACAGCCAGACATTCAGCAATTGGAGCAGAAGATCACCAATTATTGTTCAGAGTTCCTAAGGAATGAAATTCCTTACCTGGAGCTGAACTGCGACACCACTTGGTCTGAAACACAACAGCGAGGTGGTATTGGGTGGATTCTTCGATCTCCGAATGGCACCCCTCTCTGCGCGAGTTACAAATGTGTGAGAAAACGGTGGAAGGTCAGCTGGTTAGAGGTTGCGGCAATTTGTGAAGGTCTGAAAATCATCCCCCGTGATTCTCCTCTGGTTCGTGTTGAGTCGGATGCGATGAATGTGGTTCGGCTGCTCAACGATGAAGTTCAGGACATTTCAGAGCTGGCGATTTTCGTGATGGAGGCTAAATCCCTCATCTCTGCTATTATTCCCGTGGAAAAGGTTGCATATGCCCTAAGATTCCATAATGGTGTGGCACATTATCTGGCCCAACAAGCTGTTTCTTTAAATTCTTCTGAGTTTTGGTCCAATTCATTTCCTAATTGGTTTTTAGTCTTAAATGCATCTGATATTGGATATGTAGTTAATACTTACGGGGGAGCCTGTCCCATAGGTAATTTATCTTTGGGAGCTGTTTCTTAA ATGCTAGCGAAATGCCGACACCACTGGATGACATCGAAAATTCCTAGCAACACCAACATCAACCATGTGACACCAGAAGTTCTTCGCAATGTCAATGCCACACTTGTAGCATTGGCATTGCTAGGAACTGCCGACACCGACCAATCTAGCATCGACGTTTCTTCGAATTGTCGACATCACACTTTAACGTCGACAATTTTTGGAAATGTTGACACCAAATGGTTGGAGTCGACAGTACTTGTGAAAAAACTTGAGATGGCAAATCATCTGTTCTGGGAATGTAAAATGGTAAGAGGTCTTTGGTTGAAATTCTGCCCTTTTACTAATGAAATCTTTTTTGGTGACAGATCTGGATGGACTCCTTTGGATTACTGTGAAGGAATTTGGAAGGCAGACCGAGGAAAAGAACTAGAGGAAGACAGAATGGCTAGATCTCTTGTGGTGTGTTGGCAAATTTGGAATCACAGAAATGAAGTTCTTCACAACAAAAAACAGCCAGACATTCAGCAATTGGAGCAGAAGATCACCAATTATTGTTCAGAGTTCCTAAGGAATGAAATTCCTTACCTGGAGCTGAACTGCGACACCACTTGGTCTGAAACACAACAGCGAGGTGGTATTGGGTGGATTCTTCGATCTCCGAATGGCACCCCTCTCTGCGCGAGTTACAAATGTGTGAGAAAACGGTGGAAGGTCAGCTGGTTAGAGGTTGCGGCAATTTGTGAAGGTCTGAAAATCATCCCCCGTGATTCTCCTCTGGTTCGTGTTGAGTCGGATGCGATGAATGTGGTTCGGCTGCTCAACGATGAAGTTCAGGACATTTCAGAGCTGGCGATTTTCGTGATGGAGGCTAAATCCCTCATCTCTGCTATTATTCCCGTGGAAAAGGTTGCATATGCCCTAAGATTCCATAATGGTGTGGCACATTATCTGGCCCAACAAGCTGTTTCTTTAAATTCTTCTGAGTTTTGGTCCAATTCATTTCCTAATTGGTTTTTAGTCTTAAATGCATCTGATATTGGATATGTAGTTAATACTTACGGGGGAGCCTGTCCCATAGGTAATTTATCTTTGGGAGCTGTTTCTTAA MLAKCRHHWMTSKIPSNTNINHVTPEVLRNVNATLVALALLGTADTDQSSIDVSSNCRHHTLTSTIFGNVDTKWLESTVLVKKLEMANHLFWECKMVRGLWLKFCPFTNEIFFGDRSGWTPLDYCEGIWKADRGKELEEDRMARSLVVCWQIWNHRNEVLHNKKQPDIQQLEQKITNYCSEFLRNEIPYLELNCDTTWSETQQRGGIGWILRSPNGTPLCASYKCVRKRWKVSWLEVAAICEGLKIIPRDSPLVRVESDAMNVVRLLNDEVQDISELAIFVMEAKSLISAIIPVEKVAYALRFHNGVAHYLAQQAVSLNSSEFWSNSFPNWFLVLNASDIGYVVNTYGGACPIGNLSLGAVS Homology
BLAST of Spg014073.1 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]) HSP 1 Score: 105.5 bits (262), Expect = 9.6e-19 Identity = 62/220 (28.18%), Postives = 100/220 (45.45%), Query Frame = 0
BLAST of Spg014073.1 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia]) HSP 1 Score: 102.4 bits (254), Expect = 8.1e-18 Identity = 77/218 (35.32%), Postives = 111/218 (50.92%), Query Frame = 0
BLAST of Spg014073.1 vs. NCBI nr
Match: XP_024046691.1 (uncharacterized protein LOC112101027 [Citrus clementina]) HSP 1 Score: 89.7 bits (221), Expect = 5.5e-14 Identity = 80/290 (27.59%), Postives = 124/290 (42.76%), Query Frame = 0
BLAST of Spg014073.1 vs. NCBI nr
Match: KAG6693248.1 (hypothetical protein I3842_10G159900, partial [Carya illinoinensis]) HSP 1 Score: 89.0 bits (219), Expect = 9.3e-14 Identity = 68/268 (25.37%), Postives = 117/268 (43.66%), Query Frame = 0
BLAST of Spg014073.1 vs. NCBI nr
Match: KAG6693249.1 (hypothetical protein I3842_10G159900 [Carya illinoinensis]) HSP 1 Score: 89.0 bits (219), Expect = 9.3e-14 Identity = 68/268 (25.37%), Postives = 117/268 (43.66%), Query Frame = 0
BLAST of Spg014073.1 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 4.7e-19 Identity = 62/220 (28.18%), Postives = 100/220 (45.45%), Query Frame = 0
BLAST of Spg014073.1 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 3.9e-18 Identity = 77/218 (35.32%), Postives = 111/218 (50.92%), Query Frame = 0
BLAST of Spg014073.1 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 3.8e-13 Identity = 56/209 (26.79%), Postives = 101/209 (48.33%), Query Frame = 0
BLAST of Spg014073.1 vs. ExPASy TrEMBL
Match: B8AFN2 (RNase H domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_06781 PE=4 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 8.5e-13 Identity = 69/258 (26.74%), Postives = 115/258 (44.57%), Query Frame = 0
BLAST of Spg014073.1 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11 Identity = 56/217 (25.81%), Postives = 101/217 (46.54%), Query Frame = 0
BLAST of Spg014073.1 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.5e-09 Identity = 61/274 (22.26%), Postives = 115/274 (41.97%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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