Spg009786.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg009786.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Annexin
Location	scaffold7: 6317628 .. 6318495 (-)
Sequence length	276
RNA-Seq Expression	Spg009786.1
Synteny	Spg009786.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAAGTGCTGAGCAACTCATCATAAAAGCCTTCTCAACCAAAAGCACTTTTGAAGCAAAACTTAGCTCTGCCACCTTCTTTAATTTCTCTTTTCTCCTTTTGCAATGAAGACTGTTCCCATTTGTGTGGCCATCTTCCTGTCCTTGCTTTTGCTTGCCAACTTCTGCTATGCAGCAGAGGAAAATTTGGCTGCATTTCAGCCTGCCCAAGGTATCTTCACTATTTTTTTTTTTTGTTCTTTTTGGTTCATTTTCGGACATAAATGCTCGTTAACTTCTATGTGCACAATGCTTGGCTGCATACCGATGTGTAGGTATTACAGTGTTGACAACTAAGGGAGAAAAACTTTTTTCTCTCTGAGTTGTCAACATTATAAGGAGATATCTACACACTGGTATGTAACCGATGAGGAAATTAACCGTATCCTAAGGGCATTTTCGTATGATTCATTATGCAGTTGCTGATATAACCAAAAATGGAGAAGAAGCCCAAGAAGAGAAACTCAAGTTTGTTCCTCACCACATACCATTCTACAAGAAGCCCTTCTTCAAGAAGCCAATTCCTCATCACCCAATCTTCAAGAAGCCATTTCCAAAATATCCACCAGTCTTCCCAAGCCATCCTTGAAAGTATCATCAAATCTTAATCTTATTATATGCCATGGAATAAGAACACATCTAGCTACCACCCTTAAAAGTTTTAGCATATAGTTTCATTTTAGAAGTAAGTTTATATTATGAAGAAAACAAGAATTTAAAATAAAGAGAGAGAGAGAGAGTGAGCTTCCTTTACTACTCATGTATGTTACTGTCATGATCAAGTGATGTGGTTGATTATGCAATGTTGAATGTAGCAATAAAAATAAAC

mRNA sequence

ATGAAGACTGTTCCCATTTGTGTGGCCATCTTCCTGTCCTTGCTTTTGCTTGCCAACTTCTGCTATGCAGCAGAGGAAAATTTGGCTGCATTTCAGCCTGCCCAAGTTGCTGATATAACCAAAAATGGAGAAGAAGCCCAAGAAGAGAAACTCAAGTTTGTTCCTCACCACATACCATTCTACAAGAAGCCCTTCTTCAAGAAGCCAATTCCTCATCACCCAATCTTCAAGAAGCCATTTCCAAAATATCCACCAGTCTTCCCAAGCCATCCTTGA

Coding sequence (CDS)

ATGAAGACTGTTCCCATTTGTGTGGCCATCTTCCTGTCCTTGCTTTTGCTTGCCAACTTCTGCTATGCAGCAGAGGAAAATTTGGCTGCATTTCAGCCTGCCCAAGTTGCTGATATAACCAAAAATGGAGAAGAAGCCCAAGAAGAGAAACTCAAGTTTGTTCCTCACCACATACCATTCTACAAGAAGCCCTTCTTCAAGAAGCCAATTCCTCATCACCCAATCTTCAAGAAGCCATTTCCAAAATATCCACCAGTCTTCCCAAGCCATCCTTGA

Protein sequence

MKTVPICVAIFLSLLLLANFCYAAEENLAAFQPAQVADITKNGEEAQEEKLKFVPHHIPFYKKPFFKKPIPHHPIFKKPFPKYPPVFPSHP

Homology

[Close]

BLAST of Spg009786.1 vs. NCBI nr
Match: KAE8648861.1 (hypothetical protein Csa_008879 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 67/91 (73.63%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 3   TVPICVAIFLSLLLLANFCYAAEENLAAFQPAQVADITKNGEEAQEEKLKFVPHHIPFYK 62
           T+ IC+AIFLSL LL NFCYAAEEN  AF PAQ A ITKNGEEA+EEK KF+P HIPFYK
Sbjct: 64  TISICMAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYK 123

Query: 63  KPFFKKPIPHHPIFKKPFPK--YPPVFPSHP 92
           KP F K IP  PI KKPFPK   PPV PSHP
Sbjct: 124 KPIF-KTIPRQPIIKKPFPKPYRPPVLPSHP 153

[Close]

BLAST of Spg009786.1 vs. NCBI nr
Match: XP_022138883.1 (uncharacterized protein LOC111009954 [Momordica charantia])

HSP 1 Score: 102.1 bits (253), Expect = 2.7e-18
Identity = 63/103 (61.17%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MKTVPICVAIFLSLLLLANFCYAAEENLAAFQPAQVA-DITKNGEEAQEEKLKFVPHH-I 60
           MKT  I + I LSLLLL N C AAE+N+A FQP Q A DITKNGE  Q EK +F+ HH  
Sbjct: 31  MKTFFISLGILLSLLLLVNVCNAAEKNVAEFQPGQDADDITKNGEAVQGEKFRFLSHHNK 90

Query: 61  PFYKKPFF--------KKPIPHHPIFKKPFPK--YPPVFPSHP 92
           P YKKPFF        KKPIPHHPI KKP PK  +PP FP+HP
Sbjct: 91  PHYKKPFFQQIPHPIVKKPIPHHPILKKPLPKPHFPPFFPTHP 133

[Close]

BLAST of Spg009786.1 vs. NCBI nr
Match: KAG6601142.1 (hypothetical protein SDJN03_06375, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031941.1 hypothetical protein SDJN02_05983 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 5.0e-17
Identity = 54/90 (60.00%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 8  VAIFLSLLLLANFCYAAEENLAAFQPAQVADITKNGEEAQEEKLKFVPHHIPFYKKPFF- 67
          V++ L  LLLAN CYAAE+ +   + AQ     + GEE + EKLK +PHHIPFYKKP   
Sbjct: 4  VSMLLCFLLLANLCYAAEQEMGKLEAAQ-GTKGEEGEETEAEKLKLIPHHIPFYKKPLLK 63

Query: 68 ---KKPIPHHPIFKKPFPK--YPPVFPSHP 92
             KKPIPHHPI KKPFPK  YPPVFP+HP
Sbjct: 64 AAPKKPIPHHPILKKPFPKPRYPPVFPTHP 92

[Close]

BLAST of Spg009786.1 vs. NCBI nr
Match: ADN34202.1 (annexin [Cucumis melo subsp. melo])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1   MKTVPICVAIFLSLLLLANFCYAAEENLAAFQPAQ-VADIT-KNGEEAQEEKLKFVPHHI 60
           M+T  I + I LS LLL NFCYAAEE++A FQP +  A +T KNGEE QEEK KF+ HH 
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PFYKKPFFKKPIPH-HPIFKKPFPKYP---PVFPSHP 92
           P+YKKPF  KPIP+ HP  KKP P +P      P HP
Sbjct: 439 PYYKKPFL-KPIPYKHPFLKKPIPVHPFHKKPIPVHP 474

[Close]

BLAST of Spg009786.1 vs. NCBI nr
Match: KAA0034746.1 (annexin [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.8e-14
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1   MKTVPICVAIFLSLLLLANFCYAAEENLAAFQPAQ-VADIT-KNGEEAQEEKLKFVPHHI 60
           M+T  I + I LS LLL NFCYAAEE++A FQP +  A +T KNGEE QEEK KF+ HH 
Sbjct: 389 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 448

Query: 61  PFYKKPFFKKPIPH-HPIFKKPFPKYP---PVFPSHP 92
           P+YKKPF  KPIP+ HP  KKP P +P      P HP
Sbjct: 449 PYYKKPFL-KPIPYKHPFLKKPIPVHPFHKKPIPVHP 484

[Close]

BLAST of Spg009786.1 vs. ExPASy TrEMBL
Match: A0A0A0KRM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.6e-22
Identity = 64/86 (74.42%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 8  VAIFLSLLLLANFCYAAEENLAAFQPAQVADITKNGEEAQEEKLKFVPHHIPFYKKPFFK 67
          +AIFLSL LL NFCYAAEEN  AF PAQ A ITKNGEEA+EEK KF+P HIPFYKKP F 
Sbjct: 1  MAIFLSLFLLLNFCYAAEENEDAFLPAQGAGITKNGEEAKEEKFKFLPDHIPFYKKPIF- 60

Query: 68 KPIPHHPIFKKPFPK--YPPVFPSHP 92
          K IP  PI KKPFPK   PPV PSHP
Sbjct: 61 KTIPRQPIIKKPFPKPYRPPVLPSHP 85

[Close]

BLAST of Spg009786.1 vs. ExPASy TrEMBL
Match: A0A6J1CED0 (uncharacterized protein LOC111009954 OS=Momordica charantia OX=3673 GN=LOC111009954 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.3e-18
Identity = 63/103 (61.17%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 1   MKTVPICVAIFLSLLLLANFCYAAEENLAAFQPAQVA-DITKNGEEAQEEKLKFVPHH-I 60
           MKT  I + I LSLLLL N C AAE+N+A FQP Q A DITKNGE  Q EK +F+ HH  
Sbjct: 31  MKTFFISLGILLSLLLLVNVCNAAEKNVAEFQPGQDADDITKNGEAVQGEKFRFLSHHNK 90

Query: 61  PFYKKPFF--------KKPIPHHPIFKKPFPK--YPPVFPSHP 92
           P YKKPFF        KKPIPHHPI KKP PK  +PP FP+HP
Sbjct: 91  PHYKKPFFQQIPHPIVKKPIPHHPILKKPLPKPHFPPFFPTHP 133

[Close]

BLAST of Spg009786.1 vs. ExPASy TrEMBL
Match: A0A5A7SY00 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.7e-15
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1   MKTVPICVAIFLSLLLLANFCYAAEENLAAFQPAQ-VADIT-KNGEEAQEEKLKFVPHHI 60
           M+T  I + I LS LLL NFCYAAEE++A FQP +  A +T KNGEE QEEK KF+ HH 
Sbjct: 389 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 448

Query: 61  PFYKKPFFKKPIPH-HPIFKKPFPKYP---PVFPSHP 92
           P+YKKPF  KPIP+ HP  KKP P +P      P HP
Sbjct: 449 PYYKKPFL-KPIPYKHPFLKKPIPVHPFHKKPIPVHP 484

[Close]

BLAST of Spg009786.1 vs. ExPASy TrEMBL
Match: A0A5D3CG71 (Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.7e-15
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1  MKTVPICVAIFLSLLLLANFCYAAEENLAAFQPAQ-VADIT-KNGEEAQEEKLKFVPHHI 60
          M+T  I + I LS LLL NFCYAAEE++A FQP +  A +T KNGEE QEEK KF+ HH 
Sbjct: 1  MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 60

Query: 61 PFYKKPFFKKPIPH-HPIFKKPFPKYP---PVFPSHP 92
          P+YKKPF  KPIP+ HP  KKP P +P      P HP
Sbjct: 61 PYYKKPFL-KPIPYKHPFLKKPIPVHPFHKKPIPVHP 96

[Close]

BLAST of Spg009786.1 vs. ExPASy TrEMBL
Match: E5GCK5 (Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 8.7e-15
Identity = 56/97 (57.73%), Postives = 66/97 (68.04%), Query Frame = 0


Query: 1   MKTVPICVAIFLSLLLLANFCYAAEENLAAFQPAQ-VADIT-KNGEEAQEEKLKFVPHHI 60
           M+T  I + I LS LLL NFCYAAEE++A FQP +  A +T KNGEE QEEK KF+ HH 
Sbjct: 379 MRTAGIFLGILLSFLLLVNFCYAAEESVAEFQPGKGAAGVTAKNGEEEQEEKFKFLHHHK 438

Query: 61  PFYKKPFFKKPIPH-HPIFKKPFPKYP---PVFPSHP 92
           P+YKKPF  KPIP+ HP  KKP P +P      P HP
Sbjct: 439 PYYKKPFL-KPIPYKHPFLKKPIPVHPFHKKPIPVHP 474

The following BLAST results are available for this feature:

BLAST of Spg009786.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648861.1	1.6e-23	73.63	hypothetical protein Csa_008879 [Cucumis sativus]	[more]
XP_022138883.1	2.7e-18	61.17	uncharacterized protein LOC111009954 [Momordica charantia]	[more]
KAG6601142.1	5.0e-17	60.00	hypothetical protein SDJN03_06375, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ADN34202.1	1.8e-14	57.73	annexin [Cucumis melo subsp. melo]	[more]
KAA0034746.1	1.8e-14	57.73	annexin [Cucumis melo var. makuwa]	[more]

BLAST of Spg009786.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg009786.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRM7	9.6e-22	74.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G623640 PE=4 SV=1	[more]
A0A6J1CED0	1.3e-18	61.17	uncharacterized protein LOC111009954 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A5A7SY00	8.7e-15	57.73	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007700 PE=3 S...	[more]
A0A5D3CG71	8.7e-15	57.73	Annexin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002960 PE=4 ...	[more]
E5GCK5	8.7e-15	57.73	Annexin OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of Spg009786.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg009786	Spg009786	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg009786.1-three_prime_utr	Spg009786.1-three_prime_utr-scaffold7:6317628..6317867	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg009786.1-cds	Spg009786.1-cds-scaffold7:6317868..6318037	CDS
Spg009786.1-cds	Spg009786.1-cds-scaffold7:6318285..6318390	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg009786.1-five_prime_utr	Spg009786.1-five_prime_utr-scaffold7:6318391..6318495	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg009786.1	Spg009786.1-protein	polypeptide