Spg008964.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg008964.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold11: 10854652 .. 10856603 (-)
Sequence length492
RNA-Seq ExpressionSpg008964.1
SyntenySpg008964.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGAGTTCTTAGATGAGAGGATGAATCAGATGAGACTTGAGCAGCTACACTACAATGAGAGCCAGCAGCGTAGGGAGGGTAGACACTTCAGACGGACTGAAGACCAATTCGCCTATATTCGAGAGTATATTATGGCCTCGACGTCTGGACAACCCATCCCACCGCCGCTGCCACCTTACGAGTCTCCTGAGGATGAGGAGTGATGCACTATCATACGGGCTCATCCGCGGTTTTTTCAATCCTTTCCCTTATTTTTCTTTATTTTTATTTCTTAGCTTGTTCTGCTTTTATTTTTTCCTGTTTTGTTTGTTTTCTTTTTTGTAAATTTCGAAAAAATTAATATGAGGGCATTCAATTCTTGATCCAGCCAGCTCCTGACCATATACTCAGGGAGGTTTTCTGTTCCTTATTGTTGTTGTCCCATACTTTTTCTACTTGACATATACATTGAGGACAATGTAGAATTTAGGTTGGGGGTGGGGTCTGTGCTTTGCTTTGCTTTGCCTGCATATGTTTCGTATGGGTAATGATGCATCTGAGCATCACATCTTTATTATGCATGCATAGTTTTATTTTCTTTCCTCTGATTATATTGAGGCCATGCACCTGAGCATTGGACCTAATTTGTAAGCAAATTTTAAAATTATTTGAATGTTTTTGTGTGGATGACACCGTTAATTTTTCTAGGACTATGAAAATCCATGACATGTCATTTATGTTTATTTCATTGCTTTTATTGAATGATAAGCATGTTGCCCAGAAATTGAGCCTTTTTAAAATTTTTCTAGTACTTTTCTTCAGAAGGTAAACCTTAGCATGCCTAGGATTAGTTTGAAAGCTTAGGAGCGAATTATAGATCCATATGCTTGTTGTCACGTCGATAGGCGTAGGGATGAGCTATAGAGTCAAATGTCCACAAATTAGCATGTAATATCTTGCTTAGGAGAAAAGAAAGAAAATATGCCAAAGAAAAAGGAAAAGAGAGAAAAGAAAAGAAAAAAAAATGAGCGCAACATTACTTTTATTTTTCAAGAAAAAGCATGTTATAAAGGGGGTAAAAAGAGCTACCTGCGGTGTGATCAGTTAGGCCAACCAAGAGTAAAACTCGGGTTATGGGTCCCTGCACTGTAGTGTGAAAGCTAGTGCCCCGCAAAAAAAAACAAAAAAAAAAAAAGAGAAAGAAGAGAGCAGAAAGAAAATGTCTTTTATTTTTCAGGCACCTGGGTAAAGAGAAAAGCAGTCTATTTTGTCTTGTTTGCTCCTTGATAAGTTCCTAGTGCCAGTGTAGAGGGAAGATGAGTTGAGGGTTATATAATCCAATCCCAGGCTAGTAAAGTTGATTCTAAGTAGACTAAGTGTGAGCTTTAGCAAGAAGCTTCGTGAAAAATTTTAATTTCTCTTTATCTGGCAATGTGTGCATGATTCTTAATTGCAATGATTTCGATATCTTTAGGACTGAGATTTGAGTTTATAAGAGCTGTAACTTTTGAATCCTATACTTTTCATTTATATGTTTGCTCGAGGACTAGTAAGGTTTAGGTTGGGGGTATTTGATAGGACCAAAATAGTCCTATTTATTTGTTGTTAATCTAGACTTGTTAGGGTGCACTTTACGCTTTATTTGTCTATTTTGCAGATAATTTGTGTATTCAAGGTATCAGGGTCGAACCACACAAATTGGAGTTAATTCGGGCAATTTAAAGAGTTTTCGAGCTTACTTGAGGGCCATGGACCTCGAGGAGGTGAGAAGACTGTGATGATCGTGACGAGCCCGAAGAATAGTTCCAAGGAGTCAAAGGTTCGAGACCCAAATCGAGCAAGAAACGATGAGGATAAAAGTCGAAGCACGCTAAAAGAAGGCACGGCGTCAAGACGTCGTGGCCAGCGTCTCGACGCCAGCACGTTTTTCAGCCCGAGGCCCATATGGCACGAAGTCGAGACACCGTGA

mRNA sequence

ATGCTTGAGTTCTTAGATGAGAGGATGAATCAGATGAGACTTGAGCAGCTACACTACAATGAGAGCCAGCAGCGTAGGGAGGGTAGACACTTCAGACGGACTGAAGACCAATTCGCCTATATTCGAGAGTATATTATGGCCTCGACGTCTGGACAACCCATCCCACCGCCGCTGCCACCTTACGAGTCTCCTGAGGATGAGGAGTTGGGGGTGGGGTCTGTGCTTTGCTTTGCTTTGCCTGCATATGTTTCGTATGGCTTACTTGAGGGCCATGGACCTCGAGGAGGTGAGAAGACTGTGATGATCGTGACGAGCCCGAAGAATAGTTCCAAGGAGTCAAAGGTTCGAGACCCAAATCGAGCAAGAAACGATGAGGATAAAAGTCGAAGCACGCTAAAAGAAGGCACGGCGTCAAGACGTCGTGGCCAGCGTCTCGACGCCAGCACGTTTTTCAGCCCGAGGCCCATATGGCACGAAGTCGAGACACCGTGA

Coding sequence (CDS)

ATGCTTGAGTTCTTAGATGAGAGGATGAATCAGATGAGACTTGAGCAGCTACACTACAATGAGAGCCAGCAGCGTAGGGAGGGTAGACACTTCAGACGGACTGAAGACCAATTCGCCTATATTCGAGAGTATATTATGGCCTCGACGTCTGGACAACCCATCCCACCGCCGCTGCCACCTTACGAGTCTCCTGAGGATGAGGAGTTGGGGGTGGGGTCTGTGCTTTGCTTTGCTTTGCCTGCATATGTTTCGTATGGCTTACTTGAGGGCCATGGACCTCGAGGAGGTGAGAAGACTGTGATGATCGTGACGAGCCCGAAGAATAGTTCCAAGGAGTCAAAGGTTCGAGACCCAAATCGAGCAAGAAACGATGAGGATAAAAGTCGAAGCACGCTAAAAGAAGGCACGGCGTCAAGACGTCGTGGCCAGCGTCTCGACGCCAGCACGTTTTTCAGCCCGAGGCCCATATGGCACGAAGTCGAGACACCGTGA

Protein sequence

MLEFLDERMNQMRLEQLHYNESQQRREGRHFRRTEDQFAYIREYIMASTSGQPIPPPLPPYESPEDEELGVGSVLCFALPAYVSYGLLEGHGPRGGEKTVMIVTSPKNSSKESKVRDPNRARNDEDKSRSTLKEGTASRRRGQRLDASTFFSPRPIWHEVETP
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..163
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..141

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg008964Spg008964gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg008964.1-cdsSpg008964.1-cds-scaffold11:10854652..10854886CDS
Spg008964.1-cdsSpg008964.1-cds-scaffold11:10856077..10856130CDS
Spg008964.1-cdsSpg008964.1-cds-scaffold11:10856401..10856603CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg008964.1Spg008964.1-proteinpolypeptide