Spg008632.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg008632.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Heavy metal-associated isoprenylated plant protein 36-like
Location	scaffold10: 30921410 .. 30921844 (+)
Sequence length	435
RNA-Seq Expression	Spg008632.1
Synteny	Spg008632.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGAGAAGGAGCGTTACAGATTGATCGTGTTCGGCAGATTCAAGCCGTCCGACATCGCCATAAAGATCCGAAAGAAAATGAATCGCAGAGTCGAAATCCTCGACATTGAAGAAATGGCGCCCGATCCCGCCGACCAAAACCCACCGCCGCAGCTGCCGCCGGCGGAGCAAACTCAAGCCCCTGCATTTCCCCAAGGCCCCAACCCCAACCAGATGCCCATGTTTCCTTCTTTGGAACACGATCACCGGCGGCCGCCCATGTTCCCGTCGCTGGCCGCCAACGAATGCCGTTCTTTCTCGTCTTCTCGGCCCGATTTCGCCGTAACTCGGTTCCCGGAGCCGGAGATGGAGGAACGCTTCTGGCATTATGGCTATGATTATGAATTTGCTGGAGATCATAGAGGCTCTGCCTACAATTACTACGAGTATTAG

mRNA sequence

ATGATAGAGAAGGAGCGTTACAGATTGATCGTGTTCGGCAGATTCAAGCCGTCCGACATCGCCATAAAGATCCGAAAGAAAATGAATCGCAGAGTCGAAATCCTCGACATTGAAGAAATGGCGCCCGATCCCGCCGACCAAAACCCACCGCCGCAGCTGCCGCCGGCGGAGCAAACTCAAGCCCCTGCATTTCCCCAAGGCCCCAACCCCAACCAGATGCCCATGTTTCCTTCTTTGGAACACGATCACCGGCGGCCGCCCATGTTCCCGTCGCTGGCCGCCAACGAATGCCGTTCTTTCTCGTCTTCTCGGCCCGATTTCGCCGTAACTCGGTTCCCGGAGCCGGAGATGGAGGAACGCTTCTGGCATTATGGCTATGATTATGAATTTGCTGGAGATCATAGAGGCTCTGCCTACAATTACTACGAGTATTAG

Coding sequence (CDS)

ATGATAGAGAAGGAGCGTTACAGATTGATCGTGTTCGGCAGATTCAAGCCGTCCGACATCGCCATAAAGATCCGAAAGAAAATGAATCGCAGAGTCGAAATCCTCGACATTGAAGAAATGGCGCCCGATCCCGCCGACCAAAACCCACCGCCGCAGCTGCCGCCGGCGGAGCAAACTCAAGCCCCTGCATTTCCCCAAGGCCCCAACCCCAACCAGATGCCCATGTTTCCTTCTTTGGAACACGATCACCGGCGGCCGCCCATGTTCCCGTCGCTGGCCGCCAACGAATGCCGTTCTTTCTCGTCTTCTCGGCCCGATTTCGCCGTAACTCGGTTCCCGGAGCCGGAGATGGAGGAACGCTTCTGGCATTATGGCTATGATTATGAATTTGCTGGAGATCATAGAGGCTCTGCCTACAATTACTACGAGTATTAG

Protein sequence

MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDPADQNPPPQLPPAEQTQAPAFPQGPNPNQMPMFPSLEHDHRRPPMFPSLAANECRSFSSSRPDFAVTRFPEPEMEERFWHYGYDYEFAGDHRGSAYNYYEY

Homology

[Close]

BLAST of Spg008632.1 vs. NCBI nr
Match: XP_038884468.1 (uncharacterized protein LOC120075299 isoform X1 [Benincasa hispida] >XP_038884469.1 uncharacterized protein LOC120075299 isoform X1 [Benincasa hispida] >XP_038884470.1 uncharacterized protein LOC120075299 isoform X1 [Benincasa hispida] >XP_038884471.1 uncharacterized protein LOC120075299 isoform X1 [Benincasa hispida])

HSP 1 Score: 197.2 bits (500), Expect = 9.6e-47
Identity = 109/151 (72.19%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDP-ADQNPPPQLPPAEQT 60
           MIE+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P+P ADQNP    PP EQ 
Sbjct: 58  MIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMQPEPAADQNP----PPPEQI 117

Query: 61  QAPAFPQGPNP--NQMPMFPSLEHDHRRPPMFPSLAANECRSFSSSRPDFAVTRFPEPEM 120
           QA     GP+   N +PMFPSLE DH+RPPMFPSLA N+CRSF+S RPDFAVT FPEP+M
Sbjct: 118 QA----SGPSADHNHIPMFPSLEQDHQRPPMFPSLATNQCRSFASCRPDFAVTCFPEPDM 177

Query: 121 EERFWHYGYDYEFAGDHRGS----AYNYYEY 145
           EERFW YGYDYE+ GD RG     A+NYY Y
Sbjct: 178 EERFWQYGYDYEYVGD-RGDPNFCAHNYYHY 199

[Close]

BLAST of Spg008632.1 vs. NCBI nr
Match: XP_038884472.1 (uncharacterized protein LOC120075299 isoform X2 [Benincasa hispida])

HSP 1 Score: 197.2 bits (500), Expect = 9.6e-47
Identity = 109/151 (72.19%), Postives = 121/151 (80.13%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDP-ADQNPPPQLPPAEQT 60
           MIE+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P+P ADQNP    PP EQ 
Sbjct: 38  MIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMQPEPAADQNP----PPPEQI 97

Query: 61  QAPAFPQGPNP--NQMPMFPSLEHDHRRPPMFPSLAANECRSFSSSRPDFAVTRFPEPEM 120
           QA     GP+   N +PMFPSLE DH+RPPMFPSLA N+CRSF+S RPDFAVT FPEP+M
Sbjct: 98  QA----SGPSADHNHIPMFPSLEQDHQRPPMFPSLATNQCRSFASCRPDFAVTCFPEPDM 157

Query: 121 EERFWHYGYDYEFAGDHRGS----AYNYYEY 145
           EERFW YGYDYE+ GD RG     A+NYY Y
Sbjct: 158 EERFWQYGYDYEYVGD-RGDPNFCAHNYYHY 179

[Close]

BLAST of Spg008632.1 vs. NCBI nr
Match: XP_038884473.1 (uncharacterized protein LOC120075299 isoform X3 [Benincasa hispida])

HSP 1 Score: 194.5 bits (493), Expect = 6.3e-46
Identity = 108/151 (71.52%), Postives = 120/151 (79.47%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDP-ADQNPPPQLPPAEQT 60
           M E+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P+P ADQNP    PP EQ 
Sbjct: 31  MKERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMQPEPAADQNP----PPPEQI 90

Query: 61  QAPAFPQGPNP--NQMPMFPSLEHDHRRPPMFPSLAANECRSFSSSRPDFAVTRFPEPEM 120
           QA     GP+   N +PMFPSLE DH+RPPMFPSLA N+CRSF+S RPDFAVT FPEP+M
Sbjct: 91  QA----SGPSADHNHIPMFPSLEQDHQRPPMFPSLATNQCRSFASCRPDFAVTCFPEPDM 150

Query: 121 EERFWHYGYDYEFAGDHRGS----AYNYYEY 145
           EERFW YGYDYE+ GD RG     A+NYY Y
Sbjct: 151 EERFWQYGYDYEYVGD-RGDPNFCAHNYYHY 172

[Close]

BLAST of Spg008632.1 vs. NCBI nr
Match: XP_016900113.1 (PREDICTED: uncharacterized protein LOC103488610 isoform X2 [Cucumis melo] >KAA0049618.1 heavy metal-associated isoprenylated plant protein 36-like [Cucumis melo var. makuwa] >TYK15978.1 heavy metal-associated isoprenylated plant protein 36-like [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 7.6e-44
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDPA-DQNPPPQLPPAEQT 60
           MIE+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P PA DQNP    PP E  
Sbjct: 1   MIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMEPLPATDQNP----PPPENI 60

Query: 61  QAPAFPQGPNPN----QMPMFPSLEH-DHRRPPMFPSLAANECRSFSSSRPDFAVTRFPE 120
           Q P    GP PN     +PMFPSLE  DH RPPMFPSLAAN+CRS+ S RPDF VT FPE
Sbjct: 61  QGPGPGPGPGPNADQHHIPMFPSLEQADHGRPPMFPSLAANQCRSYPSCRPDFGVTCFPE 120

Query: 121 PEMEERFWHYGYDYEFAGDHRG----SAYNYYEY 145
           P+MEERFW YGYDYE  GD       S +NYY Y
Sbjct: 121 PDMEERFWEYGYDYEVVGDREERPTISLHNYYHY 150

[Close]

BLAST of Spg008632.1 vs. NCBI nr
Match: XP_008445651.1 (PREDICTED: uncharacterized protein LOC103488610 isoform X1 [Cucumis melo])

HSP 1 Score: 187.6 bits (475), Expect = 7.6e-44
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDPA-DQNPPPQLPPAEQT 60
           MIE+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P PA DQNP    PP E  
Sbjct: 38  MIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMEPLPATDQNP----PPPENI 97

Query: 61  QAPAFPQGPNPN----QMPMFPSLEH-DHRRPPMFPSLAANECRSFSSSRPDFAVTRFPE 120
           Q P    GP PN     +PMFPSLE  DH RPPMFPSLAAN+CRS+ S RPDF VT FPE
Sbjct: 98  QGPGPGPGPGPNADQHHIPMFPSLEQADHGRPPMFPSLAANQCRSYPSCRPDFGVTCFPE 157

Query: 121 PEMEERFWHYGYDYEFAGDHRG----SAYNYYEY 145
           P+MEERFW YGYDYE  GD       S +NYY Y
Sbjct: 158 PDMEERFWEYGYDYEVVGDREERPTISLHNYYHY 187

[Close]

BLAST of Spg008632.1 vs. ExPASy TrEMBL
Match: A0A5A7U302 (Heavy metal-associated isoprenylated plant protein 36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001030 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.7e-44
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDPA-DQNPPPQLPPAEQT 60
           MIE+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P PA DQNP    PP E  
Sbjct: 1   MIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMEPLPATDQNP----PPPENI 60

Query: 61  QAPAFPQGPNPN----QMPMFPSLEH-DHRRPPMFPSLAANECRSFSSSRPDFAVTRFPE 120
           Q P    GP PN     +PMFPSLE  DH RPPMFPSLAAN+CRS+ S RPDF VT FPE
Sbjct: 61  QGPGPGPGPGPNADQHHIPMFPSLEQADHGRPPMFPSLAANQCRSYPSCRPDFGVTCFPE 120

Query: 121 PEMEERFWHYGYDYEFAGDHRG----SAYNYYEY 145
           P+MEERFW YGYDYE  GD       S +NYY Y
Sbjct: 121 PDMEERFWEYGYDYEVVGDREERPTISLHNYYHY 150

[Close]

BLAST of Spg008632.1 vs. ExPASy TrEMBL
Match: A0A1S3BDX6 (uncharacterized protein LOC103488610 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488610 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.7e-44
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDPA-DQNPPPQLPPAEQT 60
           MIE+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P PA DQNP    PP E  
Sbjct: 38  MIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMEPLPATDQNP----PPPENI 97

Query: 61  QAPAFPQGPNPN----QMPMFPSLEH-DHRRPPMFPSLAANECRSFSSSRPDFAVTRFPE 120
           Q P    GP PN     +PMFPSLE  DH RPPMFPSLAAN+CRS+ S RPDF VT FPE
Sbjct: 98  QGPGPGPGPGPNADQHHIPMFPSLEQADHGRPPMFPSLAANQCRSYPSCRPDFGVTCFPE 157

Query: 121 PEMEERFWHYGYDYEFAGDHRG----SAYNYYEY 145
           P+MEERFW YGYDYE  GD       S +NYY Y
Sbjct: 158 PDMEERFWEYGYDYEVVGDREERPTISLHNYYHY 187

[Close]

BLAST of Spg008632.1 vs. ExPASy TrEMBL
Match: A0A1S4DVX0 (uncharacterized protein LOC103488610 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488610 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.7e-44
Identity = 106/154 (68.83%), Postives = 114/154 (74.03%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDPA-DQNPPPQLPPAEQT 60
           MIE+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P PA DQNP    PP E  
Sbjct: 1   MIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMEPLPATDQNP----PPPENI 60

Query: 61  QAPAFPQGPNPN----QMPMFPSLEH-DHRRPPMFPSLAANECRSFSSSRPDFAVTRFPE 120
           Q P    GP PN     +PMFPSLE  DH RPPMFPSLAAN+CRS+ S RPDF VT FPE
Sbjct: 61  QGPGPGPGPGPNADQHHIPMFPSLEQADHGRPPMFPSLAANQCRSYPSCRPDFGVTCFPE 120

Query: 121 PEMEERFWHYGYDYEFAGDHRG----SAYNYYEY 145
           P+MEERFW YGYDYE  GD       S +NYY Y
Sbjct: 121 PDMEERFWEYGYDYEVVGDREERPTISLHNYYHY 150

[Close]

BLAST of Spg008632.1 vs. ExPASy TrEMBL
Match: A0A6J1FEC7 (uncharacterized protein LOC111444752 OS=Cucurbita moschata OX=3662 GN=LOC111444752 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.1e-43
Identity = 103/148 (69.59%), Postives = 116/148 (78.38%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDP-ADQNPPPQLPPAEQT 60
           +IEK+ +RLIVFGRF+PSDIAIKIR+KMNRRVEILD EEM P+P ADQNPP   PP EQ 
Sbjct: 38  LIEKDSHRLIVFGRFRPSDIAIKIRRKMNRRVEILDYEEMEPEPIADQNPP---PPVEQA 97

Query: 61  Q-APAFPQGPNPNQMPMFPSLEHDHRRPPMFPSLAANECRSFSSSRPDFAVTRFPEPEME 120
           Q  P    G NPN  PMFPSLEHD  RPP+FPSLAA++ RSFSSSRPDFAV   PEPEME
Sbjct: 98  QVVPGTITGHNPN--PMFPSLEHDDWRPPVFPSLAAHQYRSFSSSRPDFAVAYLPEPEME 157

Query: 121 ERFWHYGYDYEFAG--DHRGSAYNYYEY 145
           +RFWHYG+DYE  G  DH  S ++YY Y
Sbjct: 158 DRFWHYGHDYEVVGDRDHTFSCHDYYHY 180

[Close]

BLAST of Spg008632.1 vs. ExPASy TrEMBL
Match: A0A0A0K866 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G032480 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 6.5e-41
Identity = 100/153 (65.36%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 1   MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAP-DPADQNPPPQLPPAEQT 60
           MIE+ER+RLIVFGRFKPSDIAIKIRKKMNRRVEILD+EEM P    DQN     PP E  
Sbjct: 38  MIERERHRLIVFGRFKPSDIAIKIRKKMNRRVEILDVEEMEPLQATDQNS----PPPENI 97

Query: 61  QAPAFPQGPNPN----QMPMFPSLEHDHRRPPMFPSLAANECRSFSSSRPDFAVTRFPEP 120
           Q      GP PN     MPMFPSLE DH RP MFPSLAAN+CRS  S R DFA+T FP+P
Sbjct: 98  QGLGSGPGPGPNVDQHHMPMFPSLEQDHGRPSMFPSLAANQCRSHPSCRSDFAITCFPKP 157

Query: 121 EMEERFWHYGYDYEFAGDHRG----SAYNYYEY 145
           +MEERFW YGYDYE  GD       S +NYY Y
Sbjct: 158 DMEERFWQYGYDYELVGDREERPTISIHNYYHY 186

[Close]

BLAST of Spg008632.1 vs. TAIR 10
Match: AT3G25855.1 (Copper transport protein family )

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-05
Identity = 24/58 (41.38%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 1  MIEKERYRLIVFGRFKPSDIAIKIRKKMNRRVEILDIEEMAPDPADQNPPPQLPPAEQ 59
          MI K+  ++I+ GRF+PSD+A+K+++KM RRVEIL++E++      +       P EQ
Sbjct: 38 MINKKERQVILCGRFRPSDVALKLQRKMKRRVEILEVEDLTNGHGGEEGSEHELPYEQ 95

The following BLAST results are available for this feature:

BLAST of Spg008632.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884468.1	9.6e-47	72.19	uncharacterized protein LOC120075299 isoform X1 [Benincasa hispida] >XP_03888446...	[more]
XP_038884472.1	9.6e-47	72.19	uncharacterized protein LOC120075299 isoform X2 [Benincasa hispida]	[more]
XP_038884473.1	6.3e-46	71.52	uncharacterized protein LOC120075299 isoform X3 [Benincasa hispida]	[more]
XP_016900113.1	7.6e-44	68.83	PREDICTED: uncharacterized protein LOC103488610 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_008445651.1	7.6e-44	68.83	PREDICTED: uncharacterized protein LOC103488610 isoform X1 [Cucumis melo]	[more]

BLAST of Spg008632.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008632.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U302	3.7e-44	68.83	Heavy metal-associated isoprenylated plant protein 36-like OS=Cucumis melo var. ...	[more]
A0A1S3BDX6	3.7e-44	68.83	uncharacterized protein LOC103488610 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DVX0	3.7e-44	68.83	uncharacterized protein LOC103488610 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1FEC7	4.1e-43	69.59	uncharacterized protein LOC111444752 OS=Cucurbita moschata OX=3662 GN=LOC1114447...	[more]
A0A0A0K866	6.5e-41	65.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G032480 PE=4 SV=1	[more]

BLAST of Spg008632.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25855.1	1.5e-05	41.38	Copper transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58
None	No IPR available	PANTHER	PTHR47294	OS08G0431150 PROTEIN	coord: 1..117

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg008632	Spg008632	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg008632.1-cds	Spg008632.1-cds-scaffold10:30921410..30921844	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg008632.1	Spg008632.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding