Spg008283.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg008283.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold5: 26832793 .. 26835073 (-)
Sequence length474
RNA-Seq ExpressionSpg008283.1
SyntenySpg008283.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTTAGGAATAAAGAAGAAAAGAAAAGAAACAGAAGGAAAAGGAAAAGGAAAAACAATAAAAAAAAAACAAAAGAAAACAAAAAAAGAAAGAAAATGGAAATGGACAGCAAGCGGTGAGTTAAAACCCACCACCGCTTCACCCATTATCAGCCCCATTTCTCATCTTTTCCCATCCAAACTTTCAGAGCACTTTACAGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTTGTTTGGAGGTTGTAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGGTCAACCTGTCAACCTTTGGTTTTTGATTCGGTTTTAGCTACACAGAAGGAACTAAGAGGTGAGGTTTGATTTTCTTGAAATTTAGTTCATTTCCTATCAAATTTCATGAAGGAAGCTTCAGCTAAATCGTATGAGAAGTTAAGGGTTTTTGGAATGGAAAAGAGAGCACATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTCCTCTGGTGTTTTGAGCATTCTGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTACCCACAACTTTCATGAAGAATTCGTGAGGCAAAAATGACTTGAAGTAGGTTTAATTTCAGGAAGAAGATAAAGGGTAGCAAAGAAGCTCGAATCTGTGTTGTCTAAGTTCGGGGCATTTCTAGGCATATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTACGTTGTAGAGTTTTCGAAAAGAAGAGTTTGATGTGTATTACATTAATTTTCGTAAGTATTGAGGACGTTATGAGTGTTGGAAGTTGTGGTGTTGAATCTGGAAAATCTGGAAAAGTAGAATGTGAAAGTGAGATTTCTAATCCAATTGTTTAGAAAATTCATGAGCATGGAACGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTTGTTATTTGACAGGCCAAGAGGAAATAGGTTGAGTCTAAAGACCAAGGAACTAGCTAAGACAGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTGTTCATGTTTAGACATTTTATATGTTTTTCCATGAATGATATATGATTTCTATGAATGGTTTCAAGCATAAGTTTTGAGCTCAGATTTTCTAACGAGGTTTATATACGAGCACGTGGTTAATGACCTTATGTGGTTAATGACCTTTTGAAAAGTAGTTGAAACGATATCTTTTAAAGTAAAGTATGTGTTAGCAAGTACTTTTAAATGATTGTCAGTTTTTCACGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAACGAGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGGCCGAGGCTATACGATACCGTGTGAACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATACTGTCGTGAGTGCTAGGCGGGCCCCACTACGACAAAGATGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTATATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTATATTTTAAATGACGAACCTGCGATATTTTAAGAAAGCTTTTATCGTTGCACGTTTATGTTTAACGCCTTGGTTGAGTTGCATTGTGCGTTTAGAGTTTTATCACGTGTTATGATTTCTGAATCTACAGTTTAAAAGTTTGTCACTCGCTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCAACTTTTCAGGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAGTACGTGGGTGGACTTGTATATTGAGTCTGTTCGTATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGGGGTCGTGGTTGTATAAACCCTAGTTGTATATGTGTTTGGTTGTGATATCTATATCAGGTTATTATCCGAACCAAGTTATGTCAGGGCGGCAACCCCGTGTATGTTGGATGGTCTCAGGGTTTCCGTTGTGTTGTGTTTCATATAGAATATTTTATATCTAAGATTAGTATGTTTATCAGGTTGAACGTTTCAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATTTCGTCAGGTGGTTTGGACGACATAA

mRNA sequence

ATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTCCTCTGGTGTTTTGAGCATTCTGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCATATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTTGAGTCTAAAGACCAAGGAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAGTACGTGGGTGGACTTGTATATTGAGTCTGTTCGTATTGTAAATGTTTTGTTATTATCCGAACCAAGTTATGTCAGGGCGGCAACCCCGTGTATGTTGGATGGTCTCAGGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATTTCGTCAGGTGGTTTGGACGACATAA

Coding sequence (CDS)

ATGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTCCTCTGGTGTTTTGAGCATTCTGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCATATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGCCAAGAGGAAATAGGTTGAGTCTAAAGACCAAGGAACTAGCTAAGACAGTAGAGATTGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGAACAAGCTCCAGTACGTGGGTGGACTTGTATATTGAGTCTGTTCGTATTGTAAATGTTTTGTTATTATCCGAACCAAGTTATGTCAGGGCGGCAACCCCGTGTATGTTGGATGGTCTCAGGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCGTCTTCCGGACTAAGCTAGCAGGTGGTCTGGGAGGGGGTGTGACATTTCGTCAGGTGGTTTGGACGACATAA

Protein sequence

MIFEQTRRISGVLWCFEHSGCTSRIRSSIWHIGWESRFHFFRPRGNRLSLKTKELAKTVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLGGGVTFRQVVWTT
Homology
[Close]
BLAST of Spg008283.1 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-20
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 43  PRGNRLSLKTKELAKTVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEP 102
           PRGNR +L T +L KTVEIELPVPDTLPTSAESS+++SSTW++LY ESV +   +L  +P
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV--EMLFYKP 138

Query: 103 SYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLGGGV 149
           S VR A+        EG    +  DD+CWLHAVF  K AG  GGGV
Sbjct: 139 SDVRVASYVCW----EGSAGIVRGDDLCWLHAVFWAKTAGSPGGGV 178

[Close]
BLAST of Spg008283.1 vs. NCBI nr
Match: KAA0067117.1 (hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ97479.1 hypothetical protein E5676_scaffold598G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 6.4e-20
Identity = 66/126 (52.38%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 43  PRGNRLSLKTKELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVD 102
           PRGNR SL+T EL KT                 VEIELPVPDTLPTSAES  ++SSTW++
Sbjct: 95  PRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

Query: 103 LYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLG 152
           LY E V +   +L  +PS VRAA+        EG    +  DDVCWLH VFR K+AGG G
Sbjct: 155 LYFEFVHV--EMLFYKPSDVRAASYVCW----EGSAGIVRGDDVCWLHTVFRAKIAGGPG 214

[Close]
BLAST of Spg008283.1 vs. NCBI nr
Match: TYK25935.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 5.4e-19
Identity = 63/124 (50.81%), Postives = 75/124 (60.48%), Query Frame = 0 

Query: 43  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVD 102
           PRGNR  L+T EL K                  VEIELP+PDTLPTSAESS ++SSTW++
Sbjct: 303 PRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLE 362

Query: 103 LYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLG 150
           LY ESV +   +L  +PS  RAA+        EG    +  DDVCWLHA+FR K AGG G
Sbjct: 363 LYFESVHV--EMLFYKPSDARAASYVCW----EGSAGIVRGDDVCWLHAIFRAKTAGGPG 420

[Close]
BLAST of Spg008283.1 vs. NCBI nr
Match: KAA0040194.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 5.4e-19
Identity = 63/124 (50.81%), Postives = 75/124 (60.48%), Query Frame = 0 

Query: 43  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVD 102
           PRGNR  L+T EL K                  VEIELP+PDTLPTSAESS ++SSTW++
Sbjct: 303 PRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLE 362

Query: 103 LYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLG 150
           LY ESV +   +L  +PS  RAA+        EG    +  DDVCWLHA+FR K AGG G
Sbjct: 363 LYFESVHV--EMLFYKPSDARAASYVCW----EGSAGIVRGDDVCWLHAIFRAKTAGGPG 420

[Close]
BLAST of Spg008283.1 vs. NCBI nr
Match: TYK11835.1 (uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 7.9e-18
Identity = 61/125 (48.80%), Postives = 75/125 (60.00%), Query Frame = 0 

Query: 40  FFRPRGNRLSLKTKELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWV 99
           +  PRGNRLSL+T EL KTV                IELPVPDTLPTSAESS ++SSTW+
Sbjct: 60  YLGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWL 119

Query: 100 DLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGL 150
           +LY ESV +   +  S  + V +    + + +  G    +  DDVCWLHAVFR K  GG 
Sbjct: 120 ELYFESVHV--EMFCSFTNQVMSELHLVFN-VSVGSTGIVRGDDVCWLHAVFRAKTVGGP 179

[Close]
BLAST of Spg008283.1 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 6.3e-21
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 0 

Query: 43  PRGNRLSLKTKELAKTVEIELPVPDTLPTSAESSRTSSSTWVDLYIESVRIVNVLLLSEP 102
           PRGNR +L T +L KTVEIELPVPDTLPTSAESS+++SSTW++LY ESV +   +L  +P
Sbjct: 79  PRGNRPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV--EMLFYKP 138

Query: 103 SYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLGGGV 149
           S VR A+        EG    +  DD+CWLHAVF  K AG  GGGV
Sbjct: 139 SDVRVASYVCW----EGSAGIVRGDDLCWLHAVFWAKTAGSPGGGV 178

[Close]
BLAST of Spg008283.1 vs. ExPASy TrEMBL
Match: A0A5A7VIY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold598G00400 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.1e-20
Identity = 66/126 (52.38%), Postives = 77/126 (61.11%), Query Frame = 0 

Query: 43  PRGNRLSLKTKELAKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVD 102
           PRGNR SL+T EL KT                 VEIELPVPDTLPTSAES  ++SSTW++
Sbjct: 95  PRGNRSSLQTGELDKTVIFLLSTLSVLYDNNAVVEIELPVPDTLPTSAESFGSNSSTWLE 154

Query: 103 LYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLG 152
           LY E V +   +L  +PS VRAA+        EG    +  DDVCWLH VFR K+AGG G
Sbjct: 155 LYFEFVHV--EMLFYKPSDVRAASYVCW----EGSAGIVRGDDVCWLHTVFRAKIAGGPG 214

[Close]
BLAST of Spg008283.1 vs. ExPASy TrEMBL
Match: A0A5A7T9P7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G00060 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-19
Identity = 63/124 (50.81%), Postives = 75/124 (60.48%), Query Frame = 0 

Query: 43  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVD 102
           PRGNR  L+T EL K                  VEIELP+PDTLPTSAESS ++SSTW++
Sbjct: 303 PRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLE 362

Query: 103 LYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLG 150
           LY ESV +   +L  +PS  RAA+        EG    +  DDVCWLHA+FR K AGG G
Sbjct: 363 LYFESVHV--EMLFYKPSDARAASYVCW----EGSAGIVRGDDVCWLHAIFRAKTAGGPG 420

[Close]
BLAST of Spg008283.1 vs. ExPASy TrEMBL
Match: A0A5D3DR18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00320 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-19
Identity = 63/124 (50.81%), Postives = 75/124 (60.48%), Query Frame = 0 

Query: 43  PRGNRLSLKTKELAK-----------------TVEIELPVPDTLPTSAESSRTSSSTWVD 102
           PRGNR  L+T EL K                  VEIELP+PDTLPTSAESS ++SSTW++
Sbjct: 303 PRGNRPGLQTGELDKIVIFPLSTLSVLRDNDAVVEIELPLPDTLPTSAESSGSNSSTWLE 362

Query: 103 LYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGLG 150
           LY ESV +   +L  +PS  RAA+        EG    +  DDVCWLHA+FR K AGG G
Sbjct: 363 LYFESVHV--EMLFYKPSDARAASYVCW----EGSAGIVRGDDVCWLHAIFRAKTAGGPG 420

[Close]
BLAST of Spg008283.1 vs. ExPASy TrEMBL
Match: A0A5D3CJX3 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00520 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 3.8e-18
Identity = 61/125 (48.80%), Postives = 75/125 (60.00%), Query Frame = 0 

Query: 40  FFRPRGNRLSLKTKELAKTV---------------EIELPVPDTLPTSAESSRTSSSTWV 99
           +  PRGNRLSL+T EL KTV                IELPVPDTLPTSAESS ++SSTW+
Sbjct: 60  YLGPRGNRLSLQTGELDKTVIFSLSTLSVLRDNNAVIELPVPDTLPTSAESSGSNSSTWL 119

Query: 100 DLYIESVRIVNVLLLSEPSYVRAATPCMLDGLREGQRVSLEEDDVCWLHAVFRTKLAGGL 150
           +LY ESV +   +  S  + V +    + + +  G    +  DDVCWLHAVFR K  GG 
Sbjct: 120 ELYFESVHV--EMFCSFTNQVMSELHLVFN-VSVGSTGIVRGDDVCWLHAVFRAKTVGGP 179

The following BLAST results are available for this feature:
BLAST of Spg008283.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.11.3e-2057.55uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0067117.16.4e-2052.38hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa] >TYJ9747... [more]
TYK25935.15.4e-1950.81gag/pol protein [Cucumis melo var. makuwa][more]
KAA0040194.15.4e-1950.81gag/pol protein [Cucumis melo var. makuwa][more]
TYK11835.17.9e-1848.80uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa][more]
BLAST of Spg008283.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg008283.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH66.3e-2157.55CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7VIY93.1e-2052.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T9P72.6e-1950.81Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1164G000... [more]
A0A5D3DR182.6e-1950.81Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0032... [more]
A0A5D3CJX33.8e-1848.80CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of Spg008283.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg008283Spg008283gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg008283.1-cdsSpg008283.1-cds-scaffold5:26832793..26832915CDS
Spg008283.1-cdsSpg008283.1-cds-scaffold5:26832991..26833051CDS
Spg008283.1-cdsSpg008283.1-cds-scaffold5:26833136..26833251CDS
Spg008283.1-cdsSpg008283.1-cds-scaffold5:26834063..26834111CDS
Spg008283.1-cdsSpg008283.1-cds-scaffold5:26834335..26834370CDS
Spg008283.1-cdsSpg008283.1-cds-scaffold5:26834520..26834608CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg008283.1-five_prime_utrSpg008283.1-five_prime_utr-scaffold5:26834609..26835073five_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg008283.1Spg008283.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016787 hydrolase activity