Spg006374.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg006374.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	AP complex subunit sigma
Location	scaffold4: 5046697 .. 5049177 (-)
Sequence length	771
RNA-Seq Expression	Spg006374.1
Synteny	Spg006374.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACGACGGAGGAGAAACTGTCCTTTGATCGGAGAGATCGAATTTTTGGTTGAGGATTTGGATTTGAAACTTTTGATTCCTGAAAGTTCAGAGCAAAATGGTAAGTGATTTAATTTGTTTTGATTGATTTCTAGATTTTGATTGTTTCAAGGTTGAAATTGCTATGTTCATTGTGTTATAGTCTTCCTCATCGTGGATCTGCTTTGCTCTCTCTTTGGGATGGTTTAGTTGGTTTCTCTTATACTGCTGAATTTTTGTTTCGTTCTGAAATCGATTTGGAGTGATTTCGGTGTTGTTGAGATTCAGATCTTTGCTTAGCTGACATTCGAATTGCGCAATTTCTGTTTCTATTTGTTGTTTGATTCGTCGCGCTCGTTCCTTTATGTGGCTGCATAGCATCTGGGATTTCAGGAATAGTTCTTTAATCTTGGGGTTTGGATTTAGTCTTGCTAGGTGGTTTGGGATTGTAATCGTGGTCCGTCCTAACTCCCTCATTTGGTTGTGCCGCTCAAGGGCGGAGCTTAGGAACTATTTCTTCTCTGTTGAGCTAATTATTGAGTTCAAATTGGAGGAGTGGCAGTTCTTCTTCTATTTCTTTTGTTCACAAGCTTGTGAATATGCTTTAGCCCCGAGTTCCTGAACCATTAAATTATATTCTTACTCTCTGCCCCTGTTCAACCTTTAGTACAGAGTTTATATCTTCAACTTTTTGGCCCCCCACAAAAGAAAAGACGGCCTAATATATTTTGCATGGTGTTCTAACTGATGTTGTTGGTGTCAATTTCCAGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTAGGCCAGCTATTTGCCTCATTCTGTAATGTAATTCTAATAGCTTCTTCTAATTTCCAACCAAAGAATTTTTTCAAAAGCTTGTTGGCCTTCCATGTCACATCTGTAAAGCTTATTGCTTTAATAAGTCTTACTTCCCCTTGGATCTATTGGACTCACCACATTATGGCGTGTGCTTGTGTCTGCTCATGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAATTTTGTGGAATGGAGGGGACTCAAAGCTGTGTATAAAAGGTACGCCATGGTATATTAATGTGTCCTGCAATCCGAGTATTTATTTTGCCCATGTTTCCCATTCTAAAGATGATTAATGATTCTGTTGGACGTGCAATGCAGATATGCAAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATCATTCATCATTATGTTGAGATTTTGGACCGTTACTTTGGCAGTGTAAGTGAATATGTTCATGAGGTGCTTGAGGCTAATCTTTTTTGCACCATCTCTTTGTTAGACTGTCTAATCTGACATGTATTTTCTTTATTATTTGTATATGTTTGTAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTATTCACTTGCTTAGACGCAACTTTGATACATTGTAAACTTATCTTGAGGATATGTTTACATCCTTGATCTGTGTTGACTTGTAATAGAATCTGTTGTTATTTTATCAAGGAGGTGCTTTTGAACCCTCCTTCGGGATAAAGGGAGAGTCTGTGGACTTGGTTTTTCACTGTTTTGTGGAAATTTTAGTTTGAGAGGAACAATAGGATTTCTATAGGGGTTGAGAGATTTTAGAAGGAGCTTTGAGAGTTGGCTAGGTTTACTTCTTCTTTATGAGCATCCGTCAATCAAGCTCTTTTTAATTACTTGTTTGATCACATTCTCTTGGATTGAGGTTCGTTCTTCTAGCTAGTGTTGGGTCCCTTTTTTGTGGTGCCCTTGTACATTCTTTCAATTTTCTGGATGAAAGCTCGGTTTCTTATCCCCCCCCCCAAAAAAAATGCAACTTTGATGCATTGTTTACTTTTTTTAACATTGAAGGCCTACTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGTACTGTCTCCTTATTTTTGCAGTACCTTCGTTATGATTTATTGATTTCAGTCTAGCTGATATGGTAATTGATATTCCACTGTAGGATTCGTTGGTGGAGACTGCAAAAGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAGGAATACTCGAGTGTATGTTTCCAGTTTTTGGGAAATTGATTTGTTCTGAAGTATTGTAATTATATTTTATTTGAACAGATATCAAACAATTGAGCGCCTTATTTTTGCTTATTGTATTGTAGTATTACACAAATTGCTTTTCTGGTTTTCTACTGATTCAATCGACGTGGCTAAATGTTTACAGGATTGTTCTACTGTTAATCACAAATATAAATGGTATTGCTTGC

mRNA sequence

GAACGACGGAGGAGAAACTGTCCTTTGATCGGAGAGATCGAATTTTTGGTTGAGGATTTGGATTTGAAACTTTTGATTCCTGAAAGTTCAGAGCAAAATGGTAATCTTCCTCATCGTGGATCTGCTTTGCTCTCTCTTTGGGATGGTTTAGTTGGTTTCTCTTATACTGCTGAATTTTTGTTTCGTTCTGAAATCGATTTGGAGAATAGTTCTTTAATCTTGGGGTTTGGATTTAGTCTTGCTAGGTGGTTTGGGATTGTAATCGTGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAATTTTGTGGAATGGAGGGGACTCAAAGCTGTGTATAAAAGATATGCAAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATCATTCATCATTATGTTGAGATTTTGGACCGTTACTTTGGCAGTGTAAGTGAATATGTTCATGAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTACTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAAGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAG

Coding sequence (CDS)

GAACGACGGAGGAGAAACTGTCCTTTGATCGGAGAGATCGAATTTTTGGTTGAGGATTTGGATTTGAAACTTTTGATTCCTGAAAGTTCAGAGCAAAATGGTAATCTTCCTCATCGTGGATCTGCTTTGCTCTCTCTTTGGGATGGTTTAGTTGGTTTCTCTTATACTGCTGAATTTTTGTTTCGTTCTGAAATCGATTTGGAGAATAGTTCTTTAATCTTGGGGTTTGGATTTAGTCTTGCTAGGTGGTTTGGGATTGTAATCGTGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAATTTTGTGGAATGGAGGGGACTCAAAGCTGTGTATAAAAGATATGCAAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTTGAAATCATTCATCATTATGTTGAGATTTTGGACCGTTACTTTGGCAGTGTAAGTGAATATGTTCATGAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTACTATATATTGGATGAGCTTCTAATTGCTGGTGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAAGAGCAAGCTAGTTCAATTAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

ERRRRNCPLIGEIEFLVEDLDLKLLIPESSEQNGNLPHRGSALLSLWDGLVGFSYTAEFLFRSEIDLENSSLILGFGFSLARWFGIVIVIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

[Close]

BLAST of Spg006374.1 vs. NCBI nr
Match: XP_038888262.1 (AP-1 complex subunit sigma-2 [Benincasa hispida])

HSP 1 Score: 308.1 bits (788), Expect = 6.9e-80
Identity = 160/168 (95.24%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. NCBI nr
Match: XP_008462009.1 (PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo])

HSP 1 Score: 307.8 bits (787), Expect = 9.0e-80
Identity = 159/168 (94.64%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 9.0e-80
Identity = 159/168 (94.64%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 197

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Spg006374.1 vs. NCBI nr
Match: XP_022135730.1 (AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex subunit sigma-2 [Momordica charantia])

HSP 1 Score: 306.6 bits (784), Expect = 2.0e-79
Identity = 159/168 (94.64%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQ+DNELEILEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. NCBI nr
Match: XP_004144562.1 (AP-1 complex subunit sigma-1 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 5.8e-79
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-77
Identity = 147/167 (88.02%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 256
           LDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 LDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Spg006374.1 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.5e-77
Identity = 146/168 (86.90%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.1e-55
Identity = 102/151 (67.55%), Postives = 127/151 (84.11%), Query Frame = 0


Query: 88  IVIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVY 147
           +  HF+LL+SRQGK RLTKWYSP++ KE+S+  RE+  M+LNR PKLCNF+EW+  K ++
Sbjct: 1   MTFHFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIF 60

Query: 148 KRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYY 207
           KRYASLYF +C D++DNEL +LEIIHH+VEILDRYFG+       VCELDLIFNFHKAYY
Sbjct: 61  KRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGN-------VCELDLIFNFHKAYY 120

Query: 208 ILDELLIAGELQESSKKTVARLIAAQDSLVE 239
           ILDEL++AGELQE+SKKTV RLI+ QD+L+E
Sbjct: 121 ILDELIMAGELQETSKKTVLRLISQQDTLLE 144

[Close]

BLAST of Spg006374.1 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-46
Identity = 94/153 (61.44%), Postives = 112/153 (73.20%), Query Frame = 0


Query: 90  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 149
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 150 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYIL 209
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGS       VCELD+IFNF KAY+IL
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGS-------VCELDIIFNFEKAYFIL 120

Query: 210 DELLIAGELQESSKKTVARLIAAQDSLVETAKE 243
           DE L+ GE+QE+SKK V + I   D L E AKE
Sbjct: 121 DEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Spg006374.1 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.3e-46
Identity = 94/153 (61.44%), Postives = 112/153 (73.20%), Query Frame = 0


Query: 90  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 149
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 150 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYIL 209
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGS       VCELD+IFNF KAY+IL
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGS-------VCELDIIFNFEKAYFIL 120

Query: 210 DELLIAGELQESSKKTVARLIAAQDSLVETAKE 243
           DE L+ GE+QE+SKK V + I   D L E AKE
Sbjct: 121 DEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Spg006374.1 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.4e-80
Identity = 159/168 (94.64%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 197

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Spg006374.1 vs. ExPASy TrEMBL
Match: A0A1S3CGG1 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.4e-80
Identity = 159/168 (94.64%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. ExPASy TrEMBL
Match: A0A6J1C1K2 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 9.7e-80
Identity = 159/168 (94.64%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQ+DNELEILEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. ExPASy TrEMBL
Match: A0A0A0K1P7 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 2.8e-79
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. ExPASy TrEMBL
Match: A0A6J1I247 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 1.1e-78
Identity = 156/168 (92.86%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQDDNELE+LE IHH+VEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 291.2 bits (744), Expect = 8.1e-79
Identity = 147/167 (88.02%), Postives = 156/167 (93.41%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 256
           LDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 LDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Spg006374.1 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 290.0 bits (741), Expect = 1.8e-78
Identity = 146/168 (86.90%), Postives = 156/168 (92.86%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHKAYYI
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHKAYYI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 257
           LDELLIAGELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 LDELLIAGELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Spg006374.1 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 212.2 bits (539), Expect = 4.8e-55
Identity = 101/116 (87.07%), Postives = 107/116 (92.24%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHK 205
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGS       VCELDLIFNFHK
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGS-------VCELDLIFNFHK 109

[Close]

BLAST of Spg006374.1 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 73/148 (49.32%), Postives = 101/148 (68.24%), Query Frame = 0


Query: 89  VIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 148
           +I F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR  K  NFVE+R  K +Y+
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 149 RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYI 208
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +       VCELDL+FNFHK Y I
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSN-------VCELDLVFNFHKVYLI 120

Query: 209 LDELLIAGELQESSKKTVARLIAAQDSL 237
           LDE ++AGELQE+SK+ +   ++  + L
Sbjct: 121 LDEFILAGELQETSKRAIIERMSELEKL 141

[Close]

BLAST of Spg006374.1 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-25
Identity = 58/145 (40.00%), Postives = 94/145 (64.83%), Query Frame = 0


Query: 90  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 149
           I F+L++++QG+ RL ++Y   + +ER  +  E+    L R  + C+FVE R  K VY+R
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 150 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVSEYVHEVCELDLIFNFHKAYYIL 209
           YASL+F + +D D+NEL ILE IH  VE +D++FG+       VCELD++F+  KA+++L
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGN-------VCELDIMFHLEKAHFML 122

Query: 210 DELLIAGELQESSKKTVARLIAAQD 235
           +E+++ G + E+SK  +   I   D
Sbjct: 123 EEMVMNGCIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of Spg006374.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888262.1	6.9e-80	95.24	AP-1 complex subunit sigma-2 [Benincasa hispida]	[more]
XP_008462009.1	9.0e-80	94.64	PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo]	[more]
KAA0050549.1	9.0e-80	94.64	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]
XP_022135730.1	2.0e-79	94.64	AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex ...	[more]
XP_004144562.1	5.8e-79	93.45	AP-1 complex subunit sigma-1 [Cucumis sativus]	[more]

BLAST of Spg006374.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	1.1e-77	88.02	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	2.5e-77	86.90	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	2.1e-55	67.55	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	2.3e-46	61.44	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	2.3e-46	61.44	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of Spg006374.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G1	4.4e-80	94.64	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CGG1	4.4e-80	94.64	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1	[more]
A0A6J1C1K2	9.7e-80	94.64	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=...	[more]
A0A0A0K1P7	2.8e-79	93.45	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1	[more]
A0A6J1I247	1.1e-78	92.86	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1	[more]

BLAST of Spg006374.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	8.1e-79	88.02	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	1.8e-78	86.90	associated protein 19	[more]
AT4G35410.1	4.8e-55	87.07	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	1.1e-35	49.32	SNARE-like superfamily protein	[more]
AT2G19790.1	1.4e-25	40.00	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 89..252 e-value: 3.0E-61 score: 207.8
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 90..246
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 90..235 e-value: 5.1E-50 score: 169.1
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 90..246
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 91..238 e-value: 3.41374E-99 score: 284.065
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 90..234

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg006374	Spg006374	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg006374.1-three_prime_utr	Spg006374.1-three_prime_utr-scaffold4:5046697..5046923	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5046924..5046995	CDS
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5047081..5047167	CDS
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5047651..5047686	CDS
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5047776..5047905	CDS
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5048008..5048099	CDS
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5048303..5048389	CDS
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5048703..5048766	CDS
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5048898..5048996	CDS
Spg006374.1-cds	Spg006374.1-cds-scaffold4:5049074..5049177	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg006374.1	Spg006374.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0035615	clathrin adaptor activity