Spg006373.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg006373.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Nucleic acid-binding, OB-fold containing protein
Location	scaffold4: 6053059 .. 6055630 (+)
Sequence length	522
RNA-Seq Expression	Spg006373.1
Synteny	Spg006373.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTGACCTTCAGGGTTCGATTTCATTCTCCATTTTCACGGTGCATTCTCATCGGCAACAGGGTTTCGTTCCGTTACCTCGATTTCCATGGCGACGGCAACAGTGAATGCCCCTGCAAAGAGGAAGCCTGTCTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTTGTGAGCTCCAAAAATGTCAAGGTGGTCAATAAAGGTGGACGATCCGCCATGCTTACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGGTATGTTTCTCTGCAGCCATAAAAGTATTTGTTAGCCTACTTTTTCTCATCTTTTGGATGTCTCCATGTGTTTTGCTGAGGCGATTTTGTGTACGGTCATGAAAAAACATTGGATAGAATGGATGGATATTAGTTTCCTTTTTCTTGGATGTTTTTTTTTTCTAAAATTGGGATGTGGTCTCTTCATTTCTGTTGGATTTTTTTTTGCTGTGAGTGAGAATTCTTTTGAATAGTGAGTGATTTTCTTTTTTGTTTATGAATTTCATCTTTGTGCCTCGTGAATTTAGTATTCTTCTCTGTAGCTTTTGTTTTTTTTTTTATAACTAGCAATAGAAACTTTTCCTTGATAATAGAGAAGTTACTCCCTTCAGGGGTATTCTGAAGGGTCGCCCATAAAAGAAACCTCCTTTTATAGTTACTAGAAGGTGCCCCAACAAAAATTTATTTAAGCTTATAGTGACTCGTCTGTGCTGAACCACCCTGGATCTTTTGTTCTGTTAATTTTTTTTTTTTTGAATGGATGTGTTCTAATATAAATAGAATTTGGGTGTTGAGATAATTGTATAACAAGGAGTGGTATCAAAGATAGGGTCTTGTCTAATGGAGGTATCTCAATCAATCAATGAGAATCAAGAAAACTTTAAATGGCTTTAACAAGGTTTGAAATGGAAATGCTTTTTTGGGCCGAAGACTTTAATCTATGGAGGAAGAATGTGTGTGTGATTGTTGTTCAATATAAGTTCGGAAGATTCCAGCAGATTTGAAGGGTTTCTTAGATACCTTGATTTGAGGGTGCAAAGGAAACTACATTGTTGAAATTTGAAACAGACTACCTGGAATTCTTTTAGGGAAGAGTGTCTCTAGTTCTAGCTCTTGAACGGAGCTTGAGGATAGTTAGTGTATGAGTTTTCTGGTCCGTGAGTTTCTTCTTTATTATTTCTGGAGCAAGTCATTCTCTCTGAGGTATGAGGGATGTTACTGGTCAAGATAGAGCTCATTTTTGTTCATCTTCTGTAAATCAGGAGCTTTGAGATACTGGATTAAGGTCTATGGCTGCAGACACCCTTTATGTCTCAACTTAGATGTTTCTTCTGACTTAAAATCTGCTGTTAATTTAATTGCATAGTCGTCTCTATATCTCTTGCCTTGAACGTAGTTGTTGGTGTTTTTGGCTCTGCTTGGTTATAAGAACCTATGGCAATCCATTTGTGGGTTTGGGTGGAAGAGGACAAGGAACCAGCCCTTATTCACAGTCATCTTGTTCGTTATCTTGGTTGCTAGAGATTACTATTTTTATGGTAGTACCTGTATATGTATGCTCTGTTTAGCGGATTTTGAACAACCATTGTACTTCTCAACATTCTTTTGCATAAAAAAGCTATTCTGAAGCCGGATGGTGACGTTTTGTTATTTTTGGTCTTTGAGATGAATGCAAGAATGTACCTTTATTTTTTTAGATTAGTGGGACAGCCATCCTGATTAGAAAAACAGACTTGTGTGTAAATCTTATTTGTGTTGGGGATAAAATTTGTTCATTATTTGGGAATTAGTCACATTCTGAGACTGGACGGTCATGTATTTAAGTTTGTGCTCGAGTTCGAGTTTTTTGTATGTTGAGGCAGTGGAGTAATCTTCAATCCTTACCTCCCACCTCCAGTAAAATAAAAATCTTCAATGCTTATGGTGTTTTGTTGCCTAATTAAACAAATGGTTGTAACTTTTGCAGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTTGCTGAACCAGCTAACTTTGAAGTTAAAGAAGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTCGAAGAGTGACTTTGGATAGTGCAATGTTAATTTATCATGGATTTACTTTCTCTATTGTGTGGTGGACTGCTATTTAACTGGTATACAGTTTTATATGGCAACACAAATCTTGCTGAAGGTAATATAAGTTCATTATTGCTGTGACTATTACCTGCTTAGTTTGGATCTGATGTGATAAAGATCTGGAAAGGCAAGTGCACATGTTACTTCCTGGTCGTATTAGTTGGAAAAGTAAATAGAAGGTTCTACCAATGCATTTGCATTTTGTTACCTCTTTTCTCTGGAAAAAAAGAACCATTATGATATTCAGCTAACTTGCACAGTTATTT

mRNA sequence

ATGGCGACGGCAACAGTGAATGCCCCTGCAAAGAGGAAGCCTGTCTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTTGTGAGCTCCAAAAATGTCAAGGTGGTCAATAAAGGTGGACGATCCGCCATGCTTACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGAACCTATGGCAATCCATTTGTGGGTTTGGGTGGAAGAGGACAAGGAACCAGCCCTTATTCACAGTCATCTTGTTCGTTATCTTGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTTGCTGAACCAGCTAACTTTGAAGTTAAAGAAGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTCGAAGAGTGA

Coding sequence (CDS)

ATGGCGACGGCAACAGTGAATGCCCCTGCAAAGAGGAAGCCTGTCTTCATTAAAGTAGAAGAGCTAAAGCCTGGTACGAGCGGCCACACTCTCACGGTCAAGGTTGTGAGCTCCAAAAATGTCAAGGTGGTCAATAAAGGTGGACGATCCGCCATGCTTACGGCTCGCCCTCAGCAATTAACTCGTATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCCATCGTCTTCACAGCTCGAAACGACCAAGAACCTATGGCAATCCATTTGTGGGTTTGGGTGGAAGAGGACAAGGAACCAGCCCTTATTCACAGTCATCTTGTTCGTTATCTTGTTGATATCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCAAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGATAAATGGGGACGAATTGAAGTTGCTGAACCAGCTAACTTTGAAGTTAAAGAAGACAACAATCTCTCTCTGGTTGAATATGAATTAGTTAACGTCGAAGAGTGA

Protein sequence

MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNTVTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE

Homology

[Close]

BLAST of Spg006373.1 vs. NCBI nr
Match: XP_022136009.1 (uncharacterized protein At4g28440-like [Momordica charantia])

HSP 1 Score: 263.1 bits (671), Expect = 1.7e-66
Identity = 142/173 (82.08%), Postives = 143/173 (82.66%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MATA VNAPAKRKPVFIKVEELKPGTSGHTL VKVVSSKNVK+VNKGGRSAMLTARPQQL
Sbjct: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKMVNKGGRSAMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VDIMKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDIMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. NCBI nr
Match: XP_038887250.1 (uncharacterized protein At4g28440-like [Benincasa hispida])

HSP 1 Score: 262.3 bits (669), Expect = 2.9e-66
Identity = 140/173 (80.92%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT  VNAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VDIMKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDIMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. NCBI nr
Match: XP_008455497.1 (PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 uncharacterized protein E6C27_scaffold430G00240 [Cucumis melo var. makuwa] >TYK21622.1 uncharacterized protein E5676_scaffold150G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 8.5e-66
Identity = 139/173 (80.35%), Postives = 141/173 (81.50%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VDIMKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDIMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. NCBI nr
Match: XP_004144523.1 (uncharacterized protein At4g28440 [Cucumis sativus] >KGN43465.1 hypothetical protein Csa_020344 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 4.2e-65
Identity = 137/173 (79.19%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VD+MKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDLMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFE KEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. NCBI nr
Match: XP_022988994.1 (uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 uncharacterized protein At4g28440-like [Cucurbita pepo subsp. pepo] >KAG7022832.1 hypothetical protein SDJN02_16568 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 256.5 bits (654), Expect = 1.6e-64
Identity = 138/173 (79.77%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT  VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRSAM TARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VD+MKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDLMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. ExPASy Swiss-Prot
Match: O49453 (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.3e-44
Identity = 96/170 (56.47%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 2   ATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLT 61
           A AT  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R A   +RP Q +
Sbjct: 8   AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPS 67

Query: 62  RISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNTV 121
           RI ECL+GDETG I+FTARNDQ                            VD+MKPG TV
Sbjct: 68  RIVECLIGDETGCILFTARNDQ----------------------------VDLMKPGATV 127

Query: 122 TLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV 172
            LRN++IDMFKG+MRL VDKWGRIE    A+F VKEDNNLSLVEYEL+NV
Sbjct: 128 ILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149

[Close]

BLAST of Spg006373.1 vs. ExPASy TrEMBL
Match: A0A6J1C327 (uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC111007815 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 8.3e-67
Identity = 142/173 (82.08%), Postives = 143/173 (82.66%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MATA VNAPAKRKPVFIKVEELKPGTSGHTL VKVVSSKNVK+VNKGGRSAMLTARPQQL
Sbjct: 1   MATAAVNAPAKRKPVFIKVEELKPGTSGHTLIVKVVSSKNVKMVNKGGRSAMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VDIMKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDIMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. ExPASy TrEMBL
Match: A0A5A7UWS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00200 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.1e-66
Identity = 139/173 (80.35%), Postives = 141/173 (81.50%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VDIMKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDIMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. ExPASy TrEMBL
Match: A0A1S3C119 (uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 4.1e-66
Identity = 139/173 (80.35%), Postives = 141/173 (81.50%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VDIMKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDIMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFEVKEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. ExPASy TrEMBL
Match: A0A0A0K1C6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038160 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.1e-65
Identity = 137/173 (79.19%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT   NAPAKRKPVF+KVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRS MLTARPQQL
Sbjct: 1   MATPAANAPAKRKPVFVKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSTMLTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VD+MKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDLMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGR+EVAEPANFE KEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRVEVAEPANFEAKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. ExPASy TrEMBL
Match: A0A6J1JN47 (uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC111486189 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.8e-65
Identity = 138/173 (79.77%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MAT  VNAPAKRKPVFIKVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRSAM TARPQQL
Sbjct: 1   MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQL 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
           TRISECLVGDETGSIVFTARNDQ                            VD+MKPGNT
Sbjct: 61  TRISECLVGDETGSIVFTARNDQ----------------------------VDLMKPGNT 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPA+FEVKEDNNLSLVEYELVNVEE
Sbjct: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE 145

[Close]

BLAST of Spg006373.1 vs. TAIR 10
Match: AT4G28440.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 178.3 bits (451), Expect = 5.2e-45
Identity = 96/170 (56.47%), Postives = 113/170 (66.47%), Query Frame = 0


Query: 2   ATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLT 61
           A AT  +  KRKPVF+KVE+LKPGT+GHTLTVKV+ +  V  V +  R A   +RP Q +
Sbjct: 8   AVATGTSTVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPS 67

Query: 62  RISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNTV 121
           RI ECL+GDETG I+FTARNDQ                            VD+MKPG TV
Sbjct: 68  RIVECLIGDETGCILFTARNDQ----------------------------VDLMKPGATV 127

Query: 122 TLRNAKIDMFKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNV 172
            LRN++IDMFKG+MRL VDKWGRIE    A+F VKEDNNLSLVEYEL+NV
Sbjct: 128 ILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149

[Close]

BLAST of Spg006373.1 vs. TAIR 10
Match: AT2G33845.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 172.2 bits (435), Expect = 3.7e-43
Identity = 98/163 (60.12%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 11  KRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGD 70
           K+KPVF+KV++LKPGTSGHTLTVKVV   +V    K G ++    RP    RISECLVGD
Sbjct: 52  KKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP--QKPGAASSSHLRP---ARISECLVGD 111

Query: 71  ETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNTVTLRNAKIDM 130
           ET  I+FTARNDQ                            V++MKPG TV LRNAKIDM
Sbjct: 112 ETACILFTARNDQ----------------------------VELMKPGATVNLRNAKIDM 171

Query: 131 FKGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           FKGSMRLAVDKWGRIE  EPA+  VKEDNNLSLVEYELVNV E
Sbjct: 172 FKGSMRLAVDKWGRIEATEPADITVKEDNNLSLVEYELVNVVE 181

[Close]

BLAST of Spg006373.1 vs. TAIR 10
Match: AT1G23750.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 164.5 bits (415), Expect = 7.8e-41
Identity = 92/162 (56.79%), Postives = 111/162 (68.52%), Query Frame = 0


Query: 12  RKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQLTRISECLVGDE 71
           +KP F KV++L+PGTSGH + VK+VS+   K+V + GR+    AR     RISEC+VGDE
Sbjct: 10  KKPAFTKVDQLRPGTSGHNVNVKIVST---KMVLQKGRADGPQARQ---LRISECIVGDE 69

Query: 72  TGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNTVTLRNAKIDMF 131
           TG IVFTARNDQ                            VD+MK G+TVTLRNAKIDM+
Sbjct: 70  TGVIVFTARNDQ----------------------------VDLMKEGSTVTLRNAKIDMY 129

Query: 132 KGSMRLAVDKWGRIEVAEPANFEVKEDNNLSLVEYELVNVEE 174
           KGSMRLAVDKWGR+EV EPA+F+VKED N+SL+EYELVNV E
Sbjct: 130 KGSMRLAVDKWGRVEVTEPASFKVKEDTNMSLIEYELVNVVE 137

[Close]

BLAST of Spg006373.1 vs. TAIR 10
Match: AT1G10590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-39
Identity = 96/173 (55.49%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MA AT    A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q  
Sbjct: 1   MAEAT---SALRKPVFTKVNELRPGTNGHSLNVKVVNTK--MVMQRGGGRPMGPQSRQM- 60

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
            RI+ECLVGDETG I+FTARNDQ                            VD+MK G+ 
Sbjct: 61  -RIAECLVGDETGIIIFTARNDQ----------------------------VDMMKEGSV 120

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPANFEVKEDNNLSLVEYELVNVE 173
           VTLRNAKIDM+KGSMRLAVD+WGR+EVA EP +  VK+DNNLSL+EYELV+VE
Sbjct: 121 VTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNLSLIEYELVSVE 138

[Close]

BLAST of Spg006373.1 vs. TAIR 10
Match: AT1G10590.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-39
Identity = 96/173 (55.49%), Postives = 114/173 (65.90%), Query Frame = 0


Query: 1   MATATVNAPAKRKPVFIKVEELKPGTSGHTLTVKVVSSKNVKVVNKGGRSAMLTARPQQL 60
           MA AT    A RKPVF KV EL+PGT+GH+L VKVV++K   V+ +GG   M     Q  
Sbjct: 15  MAEAT---SALRKPVFTKVNELRPGTNGHSLNVKVVNTK--MVMQRGGGRPMGPQSRQM- 74

Query: 61  TRISECLVGDETGSIVFTARNDQEPMAIHLWVWVEEDKEPALIHSHLVRYLVDIMKPGNT 120
            RI+ECLVGDETG I+FTARNDQ                            VD+MK G+ 
Sbjct: 75  -RIAECLVGDETGIIIFTARNDQ----------------------------VDMMKEGSV 134

Query: 121 VTLRNAKIDMFKGSMRLAVDKWGRIEVA-EPANFEVKEDNNLSLVEYELVNVE 173
           VTLRNAKIDM+KGSMRLAVD+WGR+EVA EP +  VK+DNNLSL+EYELV+VE
Sbjct: 135 VTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDNNLSLIEYELVSVE 152

The following BLAST results are available for this feature:

BLAST of Spg006373.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136009.1	1.7e-66	82.08	uncharacterized protein At4g28440-like [Momordica charantia]	[more]
XP_038887250.1	2.9e-66	80.92	uncharacterized protein At4g28440-like [Benincasa hispida]	[more]
XP_008455497.1	8.5e-66	80.35	PREDICTED: uncharacterized protein At4g28440 [Cucumis melo] >KAA0059117.1 unchar...	[more]
XP_004144523.1	4.2e-65	79.19	uncharacterized protein At4g28440 [Cucumis sativus] >KGN43465.1 hypothetical pro...	[more]
XP_022988994.1	1.6e-64	79.77	uncharacterized protein At4g28440-like [Cucurbita maxima] >XP_023529810.1 unchar...	[more]

BLAST of Spg006373.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49453	7.3e-44	56.47	Uncharacterized protein At4g28440 OS=Arabidopsis thaliana OX=3702 GN=At4g28440 P...	[more]

BLAST of Spg006373.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C327	8.3e-67	82.08	uncharacterized protein At4g28440-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5A7UWS4	4.1e-66	80.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C119	4.1e-66	80.35	uncharacterized protein At4g28440 OS=Cucumis melo OX=3656 GN=LOC103495649 PE=4 S...	[more]
A0A0A0K1C6	2.1e-65	79.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038160 PE=4 SV=1	[more]
A0A6J1JN47	7.8e-65	79.77	uncharacterized protein At4g28440-like OS=Cucurbita maxima OX=3661 GN=LOC1114861...	[more]

BLAST of Spg006373.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28440.1	5.2e-45	56.47	Nucleic acid-binding, OB-fold-like protein	[more]
AT2G33845.1	3.7e-43	60.12	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G23750.1	7.8e-41	56.79	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.1	2.5e-39	55.49	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G10590.3	2.5e-39	55.49	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 26..163 e-value: 8.1E-41 score: 140.4
None	No IPR available	PANTHER	PTHR31472	OS05G0244600 PROTEIN	coord: 4..172
None	No IPR available	PANTHER	PTHR31472:SF13	EXPRESSED PROTEIN	coord: 4..172
None	No IPR available	CDD	cd04491	SoSSB_OBF	coord: 61..147 e-value: 7.69194E-13 score: 58.7885
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 16..164

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg006373	Spg006373	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg006373.1-five_prime_utr	Spg006373.1-five_prime_utr-scaffold4:6053059..6053146	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg006373.1-cds	Spg006373.1-cds-scaffold4:6053147..6053396	CDS
Spg006373.1-cds	Spg006373.1-cds-scaffold4:6054586..6054669	CDS
Spg006373.1-cds	Spg006373.1-cds-scaffold4:6055123..6055310	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg006373.1-three_prime_utr	Spg006373.1-three_prime_utr-scaffold4:6055311..6055630	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg006373.1	Spg006373.1-protein	polypeptide