Spg005964.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg005964.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	methyl-CpG-binding domain-containing protein 5
Location	scaffold11: 2063653 .. 2066679 (-)
Sequence length	828
RNA-Seq Expression	Spg005964.1
Synteny	Spg005964.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACGACAATAAATAATCTCCCCCGTGTTCTAACGTCCTCTTTCCGTCTTCTCCTTCTCTTCTTTCTCCCACATCCCCCCACCCACATGTCTGCTTCTGGAACTTCGTTTCAAGACCCGACCCGACCCGACTTACCTTCCTCCGCCTCCCACCACCTCCCCCCGGACCCCCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCGCCGCCCCATGCGCCACCCGAGATCTTCACCGCAAGAGGCCCGACACCTCCGCCACTCGCCGATCTCCATTGCGCCCCGAGCCTCCCAACGGTAACAACCCCCCTCCGGATCCTCCTGCTCCCGGAAATGGAGATTCTCCGCCCTCCAAGAAGCTGTCCGGCTCCAGACCCACCGACGCCTCCCCGAAATCCGCCTCCTTGGAGAGGCCTAATTGGCTGCCGCCGGGCTGGGTGGTGGAAGATAGAGTTCGCGCCTCGGGTGCTACAGCTGGAACGGTCGATAAGGTGAATTTAGATTCCTTCTCTTTATGACTTGAATCGTTTTACCGTCTTGAATCTTGAGTTGCTTTCTCTCTTGGCTTGGCGTTTTGGGTTTTGGAAGATCGTGTTGGAAGTGGAGGGGAATCGGTTTTGGTAGTCAATCGACCATGCAAGTTTTAGTCTAGAACGCGAGAGCTACTCAACTTTCTCTCTGCAATTTAATGTTTGACGATTGAACAGGGTTTTACCGTCGCTTTGAATTGTTTTCTTTTCTACTCTAGCTGTTCGACTGTTGGTTTAGAATTTTCAACCAGTTATGGATGATCTTTGGTCATACTGTTACGTTTAGTCTTACTGCGTTTGGAACTTCGGATGATAACACGAACCAATCAGAAGAAATTCTCATTGTTTACTGAAAATGATCTTTTGTTTTTGCCCCAAGGGGTTGGTTATTGCATTCCCTTCTCAGTTGCTCTCTCATCAATTCTGGAAAAAAAGAGCTATATCAAGTAGTAAAGGATTTAGTAATCACTCTGGATGGGTTATCATCTGAAATCTCTGTCGTGTTGATGGGTATTACACTTTTAGTTACCTGTTTGGGAATTGAAAAGTTTCATAAGAGAAAGTGTTAAGGAATTCATTTCATTCTCAGGATCAGGCTCTTCCTCTATAAATTTGTTTAGGGAATTCTTTTGTCCTTTATTTGGTATGGCATTTAAGTATGTTCTGGTCCATGCTTTCGAATGAACTCATCTGACAATCCAAGCAATAACAAACTCTCTTGGTCTTTTTCCCTGGTTGGTGAACAAGCCTCGACGAACTTTGATATAGATTTAGGTGCTTCTTTGGATGTGAGACACGGTACTCTAGCTAGCTAACTAACCGGTTATACGGAATCACCTAAGCATAACAGAGTGTGGTTGATTAGGATGGAGACCATTGGAAAAAGGAATAACAAAAACCTCCACTGTTATCCTGATAACCAGTTCATAAATGGTCAGCATCAAATTTGTATGATAGTATTGATTATTTTATCTCTCTGTGCATGTTAGTGAATAGCTTTGGACTCATATTTGTAGATTTCAAATGCTCTTGTTGGAATTTTGCAGCTCATATCATAGGATGTGTGATTAATGCTTGGTGCTTGATATATGATGCTTCACTAAGAGTCATGTTTGAGATGGATTCTACCTTAATCTTGTATTCATAATTAGCTGTGTTTAAAACCACATTGACATTGTTGATAGACAAAACAAGTGCAAGCAATGAAGTACGGTCACAAGTACCATCTTGCATTTAATTATTGAGAAAGAGTTTTGAGGAGTGTCGTATGGAAATTGCTTATGAATTGAGTTCTTCTTTTTCCTTTTGTTTTTTGTCATGTCGTGCTGAATTAATTGGGAGCATGCTTGGGCCCATTTATATCTTGAGGTTCCCCCTTCTTATCATCCTGTTTTAGATGTGTATATTAAACAAACAAATAGTAAAGAATGTTAAAAGAATCTAATTTATCCCCATGTCCCTTGCAGTACTACTTTGACCCAGTTTCAGGCCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACGTTAAAGAAACGGAAGAAATCATTAGATGGTAATGCGACGGTGAGTCGAAAGCTAACATTCCTTCTTTGGCACCCAATGGAATATTCAGATCTTCTCATCCATTTTTTCGCTTTTCCTGATTTGCAACTCTGCAGTCTGCTGATGGCTCCGAAGAACCCAAGACCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTGAACTTTGATTTCTTCAAAGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCGTCTCAGGAGGCTTGGACGCCGTTTATCGACAACGAGAAAGTACCTGAATCTACCAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGAAGTTTGAAGGCAACTTCAACCCTTTTGGACATTTTTTGGGACACCATCCAGGCAAGAACCATCCTCCCTCCCTCCCTCCCTCTAATGGCTTCCCATCTGCAATTCTTTTGGTCTTTTTTTTTTGGAAGGAGCAGGTGAGGTTGAGGGAAGTGTTGTGAAAAACCAGATTTGGTTAGGAAAGATTACTGCAAAAAAAATCATTGACTCTATCTAACTGACTATGTCTTGGACTGTGGAAGAAAGTGATCAATTTGTGTAGATGAGGGCTGCTCAGTTCATTCTGAATCAAATGTATTTGAATGAGGGGCCATTTAACTTTGATTCAATGGTCTGGCTCTTCACTTTGATATACATCTGTATTTTTTTTTTTTTTTTTTTTTTTTGTGATTCAAAATTGATATTTTTGTGGTAATAATATTGATGTTGCATGGGATCTTGTCTATGAAATGAGGAATGAAAATGGAATTAGCTAGAATAGAGTCAATGAAAATGACCAATTTTAAATATAATGTTTGGTCAAACTATTTTGAAACTAGAAATTTATGGTTTGGAATAAAAACAAAGTGGAAGAATTGTAGTTTGTCTGTTTTGCAATTCAT

mRNA sequence

GCAACGACAATAAATAATCTCCCCCGTGTTCTAACGTCCTCTTTCCGTCTTCTCCTTCTCTTCTTTCTCCCACATCCCCCCACCCACATGTCTGCTTCTGGAACTTCGTTTCAAGACCCGACCCGACCCGACTTACCTTCCTCCGCCTCCCACCACCTCCCCCCGGACCCCCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCGCCGCCCCATGCGCCACCCGAGATCTTCACCGCAAGAGGCCCGACACCTCCGCCACTCGCCGATCTCCATTGCGCCCCGAGCCTCCCAACGGTAACAACCCCCCTCCGGATCCTCCTGCTCCCGGAAATGGAGATTCTCCGCCCTCCAAGAAGCTGTCCGGCTCCAGACCCACCGACGCCTCCCCGAAATCCGCCTCCTTGGAGAGGCCTAATTGGCTGCCGCCGGGCTGGGTGGTGGAAGATAGAGTTCGCGCCTCGGGTGCTACAGCTGGAACGGTCGATAAGTACTACTTTGACCCAGTTTCAGGCCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACGTTAAAGAAACGGAAGAAATCATTAGATGGTAATGCGACGTCTGCTGATGGCTCCGAAGAACCCAAGACCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTGAACTTTGATTTCTTCAAAGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCGTCTCAGGAGGCTTGGACGCCGTTTATCGACAACGAGAAAGTACCTGAATCTACCAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGA

Coding sequence (CDS)

GCAACGACAATAAATAATCTCCCCCGTGTTCTAACGTCCTCTTTCCGTCTTCTCCTTCTCTTCTTTCTCCCACATCCCCCCACCCACATGTCTGCTTCTGGAACTTCGTTTCAAGACCCGACCCGACCCGACTTACCTTCCTCCGCCTCCCACCACCTCCCCCCGGACCCCCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCGCCGCCCCATGCGCCACCCGAGATCTTCACCGCAAGAGGCCCGACACCTCCGCCACTCGCCGATCTCCATTGCGCCCCGAGCCTCCCAACGGTAACAACCCCCCTCCGGATCCTCCTGCTCCCGGAAATGGAGATTCTCCGCCCTCCAAGAAGCTGTCCGGCTCCAGACCCACCGACGCCTCCCCGAAATCCGCCTCCTTGGAGAGGCCTAATTGGCTGCCGCCGGGCTGGGTGGTGGAAGATAGAGTTCGCGCCTCGGGTGCTACAGCTGGAACGGTCGATAAGTACTACTTTGACCCAGTTTCAGGCCGTCGATTCCGGTCTAAGATTGAGGTTCTTTACTTTCTGGAAACAGGAACGTTAAAGAAACGGAAGAAATCATTAGATGGTAATGCGACGTCTGCTGATGGCTCCGAAGAACCCAAGACCAAGAAATCTTCAAGCAATGCTAAATCTGCTCCTTTGAACTTTGATTTCTTCAAAGTGCCTGAAAAGGTTGAGTGGGTTCTCACAGACCCGTCTCAGGAGGCTTGGACGCCGTTTATCGACAACGAGAAAGTACCTGAATCTACCAAACGCGAATGGGTGGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGA

Protein sequence

ATTINNLPRVLTSSFRLLLLFFLPHPPTHMSASGTSFQDPTRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCATRDLHRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPKSASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKKRKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFIDNEKVPESTKREWVGAFQLLGRSKV

Homology

[Close]

BLAST of Spg005964.1 vs. NCBI nr
Match: XP_022948610.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 379.0 bits (972), Expect = 3.4e-101
Identity = 207/264 (78.41%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HR +PDTSAT RSPL  +P N    PPD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  ERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGN  SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQEAWTPFI+
Sbjct: 181 RKKSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSK+
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of Spg005964.1 vs. NCBI nr
Match: XP_022998335.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 378.3 bits (970), Expect = 5.8e-101
Identity = 208/264 (78.79%), Postives = 216/264 (81.82%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HRK+PDTSAT RSPL  +P N     PD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  +RPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGNA SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQEAWTPFI+
Sbjct: 181 RKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Spg005964.1 vs. NCBI nr
Match: KAG7036930.1 (Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.9 bits (969), Expect = 7.6e-101
Identity = 209/264 (79.17%), Postives = 216/264 (81.82%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HR +PDTSAT RSPL P+P N    PPD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGNHRNKPDTSATLRSPLPPDPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  ERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGN  SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQEAWTPFI+
Sbjct: 181 RKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Spg005964.1 vs. NCBI nr
Match: XP_023523162.1 (methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 375.2 bits (962), Expect = 4.9e-100
Identity = 208/264 (78.79%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HRK+PDTSAT RSPL  +P N    PPD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGTHRKKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  ERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGN  SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQE WTPFI+
Sbjct: 181 RKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEVWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Spg005964.1 vs. NCBI nr
Match: XP_022948611.1 (methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 374.8 bits (961), Expect = 6.4e-100
Identity = 207/264 (78.41%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HR +PDTSAT RSPL  +P N    PPD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  ERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGN  SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQEAWTPFI+
Sbjct: 181 RKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSK+
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Spg005964.1 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-28
Identity = 76/178 (42.70%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 102 PPPDPPAPGNGDSPPSKKLSGSRPTDA-SPKSASLERPNWLPPGWVVEDRVRASGATAGT 161
           PPP+ PA                P D+ S K A+    NWLPP W  E RVR SG  AGT
Sbjct: 10  PPPENPA---------------TPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGT 69

Query: 162 VDKYYFDPVSGRRFRSKIEVLYFLETGTLKKRK-KSLDGNATSADGSE-------EPKTK 221
           VDK+Y++P++GR+FRSK EVLY+LE GT KK+  K+ +   + ++ SE       + K+ 
Sbjct: 70  VDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSN 129

Query: 222 KSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFIDNEKVPESTKREWVGAFQLL 271
           K  +     PLNFDF  VPEKV W   + S+EAW PFI + K+ ES  ++W   F L+
Sbjct: 130 KKVTEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Spg005964.1 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-28
Identity = 86/235 (36.60%), Postives = 125/235 (53.19%), Query Frame = 0


Query: 45  LPSSASHHLPPDPLLSAGSFIDSSAAPCATRDLHRKRPDTSATRRSPLRPEPPNGNNPPP 104
           +  S +   PPDPLL++G+FI S+              D+SA RR      P  G     
Sbjct: 1   MSDSVAGDFPPDPLLASGAFISSAGDGTL---------DSSAKRR------PIQGG---- 60

Query: 105 DPPAPGNGDSPPSKKLSGSRPTDASPKSASLER----PNWLPPGWVVEDRVRASGATAGT 164
                G+G+S      +G+   +   +S S +R     NWLPPGW VED++R SGATAG+
Sbjct: 61  -IGISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGS 120

Query: 165 VDKYYFDPVSGRRFRSKIEVLYFLETGTLKKRKKSLDGNATSADGSEEPKTKKSSSNA-- 224
           VDKYY++P +GR+FRS+ EVLY+LE GT K+  K  +    + D  E   + + +  A  
Sbjct: 121 VDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATV 180

Query: 225 ---KSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFIDNEKVPESTKREWVGAFQLL 271
                 PL+FDF   P+KV W + +  +E W P I + KV +S +R+W  AF  +
Sbjct: 181 PPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

[Close]

BLAST of Spg005964.1 vs. ExPASy TrEMBL
Match: A0A6J1GAC7 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.7e-101
Identity = 207/264 (78.41%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HR +PDTSAT RSPL  +P N    PPD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  ERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGN  SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQEAWTPFI+
Sbjct: 181 RKKSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSK+
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of Spg005964.1 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 2.8e-101
Identity = 208/264 (78.79%), Postives = 216/264 (81.82%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HRK+PDTSAT RSPL  +P N     PD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  +RPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGNA SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQEAWTPFI+
Sbjct: 181 RKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Spg005964.1 vs. ExPASy TrEMBL
Match: A0A6J1G9P7 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 3.1e-100
Identity = 207/264 (78.41%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HR +PDTSAT RSPL  +P N    PPD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  ERPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGN  SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQEAWTPFI+
Sbjct: 181 RKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSK+
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKI 260

[Close]

BLAST of Spg005964.1 vs. ExPASy TrEMBL
Match: A0A6J1K9Z4 (methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.5e-99
Identity = 207/264 (78.41%), Postives = 215/264 (81.44%), Query Frame = 0


Query: 30  MSASGTSFQDP-------TRPDLPSSASHHLPPDPLLSAGSFIDSSAAPCAT-------- 89
           MSASGTSF DP       TRPDLPS   HH PPDPLLS+GSFIDSS A C T        
Sbjct: 1   MSASGTSFPDPDWPRQGSTRPDLPS--PHHFPPDPLLSSGSFIDSSTARCGTLPSSPDYA 60

Query: 90  RDL---HRKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLSGSRPTDASPK 149
           RDL   HRK+PDTSAT RSPL  +P N     PD P PGNGDS   KK+S SR TDASPK
Sbjct: 61  RDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDASPK 120

Query: 150 SASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVLYFLETGTLKK 209
           SA  +RPNWLPPGWVVEDRVRASGATAGTVDKYYFDP SGRRFRSKIEVLYFLETGTL+K
Sbjct: 121 SALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTLRK 180

Query: 210 RKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFID 269
           RKKSLDGN  SADGSEEPK+KKSSSNAKSAPLNFDFF VPEKVEWVLTDPSQEAWTPFI+
Sbjct: 181 RKKSLDGN--SADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPFIN 240

Query: 270 NEKVPESTKREWVGAFQLLGRSKV 276
           NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 NEKVPESTKREWVAAFQLLGRSKV 260

[Close]

BLAST of Spg005964.1 vs. ExPASy TrEMBL
Match: A0A1S3C6A2 (methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103497158 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 7.4e-94
Identity = 202/274 (73.72%), Postives = 211/274 (77.01%), Query Frame = 0


Query: 26  PPTHMSASGTSF--------QDPTRPDLPSSASHHLPPDPLLSAGSFIDSS-----AAPC 85
           P THMSASGTS          DPTRPDLP   SHHLPPDPLLSAGSFIDSS     A P 
Sbjct: 20  PQTHMSASGTSLPDSDWPRPHDPTRPDLP--FSHHLPPDPLLSAGSFIDSSSSSATATPI 79

Query: 86  AT--------RDLH---RKRPDTSATRRSPLRPEPPNGNNPPPDPPAPGNGDSPPSKKLS 145
           +T        RDL    RK P TS+TRRSPLRP+P N            NGDS PSKK+S
Sbjct: 80  STVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNS----------FNGDSSPSKKVS 139

Query: 146 GSRPTDASPKSASLERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPVSGRRFRSKIEVL 205
            S    AS KSA  ERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDPVS RRFRSKIEVL
Sbjct: 140 AS--NSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVL 199

Query: 206 YFLETGTLKKRKKSLDGNATSADGSEEPKTKKSSSNAKSAPLNFDFFKVPEKVEWVLTDP 265
           YFLETGTL+KRKKSLDGN +S DGS+EPK KKSSSNAKSAPLNFDFF VPEKVEWVLTDP
Sbjct: 200 YFLETGTLRKRKKSLDGNPSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDP 259

Query: 266 SQEAWTPFIDNEKVPESTKREWVGAFQLLGRSKV 276
           SQ+AWTPFIDNEKVPESTK EWVGAFQLLGRSKV
Sbjct: 260 SQDAWTPFIDNEKVPESTKCEWVGAFQLLGRSKV 279

[Close]

BLAST of Spg005964.1 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 128.3 bits (321), Expect = 9.8e-30
Identity = 76/178 (42.70%), Postives = 102/178 (57.30%), Query Frame = 0


Query: 102 PPPDPPAPGNGDSPPSKKLSGSRPTDA-SPKSASLERPNWLPPGWVVEDRVRASGATAGT 161
           PPP+ PA                P D+ S K A+    NWLPP W  E RVR SG  AGT
Sbjct: 10  PPPENPA---------------TPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGT 69

Query: 162 VDKYYFDPVSGRRFRSKIEVLYFLETGTLKKRK-KSLDGNATSADGSE-------EPKTK 221
           VDK+Y++P++GR+FRSK EVLY+LE GT KK+  K+ +   + ++ SE       + K+ 
Sbjct: 70  VDKFYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSN 129

Query: 222 KSSSNAKSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFIDNEKVPESTKREWVGAFQLL 271
           K  +     PLNFDF  VPEKV W   + S+EAW PFI + K+ ES  ++W   F L+
Sbjct: 130 KKVTEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Spg005964.1 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-29
Identity = 86/235 (36.60%), Postives = 125/235 (53.19%), Query Frame = 0


Query: 45  LPSSASHHLPPDPLLSAGSFIDSSAAPCATRDLHRKRPDTSATRRSPLRPEPPNGNNPPP 104
           +  S +   PPDPLL++G+FI S+              D+SA RR      P  G     
Sbjct: 1   MSDSVAGDFPPDPLLASGAFISSAGDGTL---------DSSAKRR------PIQGG---- 60

Query: 105 DPPAPGNGDSPPSKKLSGSRPTDASPKSASLER----PNWLPPGWVVEDRVRASGATAGT 164
                G+G+S      +G+   +   +S S +R     NWLPPGW VED++R SGATAG+
Sbjct: 61  -IGISGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGS 120

Query: 165 VDKYYFDPVSGRRFRSKIEVLYFLETGTLKKRKKSLDGNATSADGSEEPKTKKSSSNA-- 224
           VDKYY++P +GR+FRS+ EVLY+LE GT K+  K  +    + D  E   + + +  A  
Sbjct: 121 VDKYYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATV 180

Query: 225 ---KSAPLNFDFFKVPEKVEWVLTDPSQEAWTPFIDNEKVPESTKREWVGAFQLL 271
                 PL+FDF   P+KV W + +  +E W P I + KV +S +R+W  AF  +
Sbjct: 181 PPPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

The following BLAST results are available for this feature:

BLAST of Spg005964.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022948610.1	3.4e-101	78.41	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita moscha...	[more]
XP_022998335.1	5.8e-101	78.79	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima...	[more]
KAG7036930.1	7.6e-101	79.17	Methyl-CpG-binding domain-containing protein 6, partial [Cucurbita argyrosperma ...	[more]
XP_023523162.1	4.9e-100	78.79	methyl-CpG-binding domain-containing protein 5-like [Cucurbita pepo subsp. pepo]	[more]
XP_022948611.1	6.4e-100	78.41	methyl-CpG-binding domain-containing protein 5-like isoform X2 [Cucurbita moscha...	[more]

BLAST of Spg005964.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SNC0	1.4e-28	42.70	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LTJ1	2.4e-28	36.60	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Spg005964.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GAC7	1.7e-101	78.41	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita mosc...	[more]
A0A6J1KC76	2.8e-101	78.79	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1G9P7	3.1e-100	78.41	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita mosc...	[more]
A0A6J1K9Z4	1.5e-99	78.41	methyl-CpG-binding domain-containing protein 5-like isoform X2 OS=Cucurbita maxi...	[more]
A0A1S3C6A2	7.4e-94	73.72	methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Spg005964.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46580.1	9.8e-30	42.70	methyl-CPG-binding domain protein 5	[more]
AT5G59380.1	1.7e-29	36.60	methyl-CPG-binding domain 6	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 136..233 e-value: 4.6E-14 score: 51.9
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 131..203 score: 14.828479
None	No IPR available	GENE3D	3.30.890.10		coord: 111..224 e-value: 5.3E-22 score: 80.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 73..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 193..220
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..113
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 129..261
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 129..261
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 133..187

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg005964	Spg005964	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg005964.1-three_prime_utr	Spg005964.1-three_prime_utr-scaffold11:2063653..2064251	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg005964.1-cds	Spg005964.1-cds-scaffold11:2064252..2064476	CDS
Spg005964.1-cds	Spg005964.1-cds-scaffold11:2064572..2064685	CDS
Spg005964.1-cds	Spg005964.1-cds-scaffold11:2066191..2066679	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg005964.1	Spg005964.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding