Spg004311.1 (mRNA) Sponge gourd (cylindrica) v1

Overview
NameSpg004311.1
TypemRNA
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold5: 17588203 .. 17592551 (-)
Sequence length423
RNA-Seq ExpressionSpg004311.1
SyntenySpg004311.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTTTTGCTTCGCCAAATTCGCATTGTCGTTTGTTCGATTGCTGTTGTGGATCTCGTTGTAGGAGGAGATTTCGCGATTGCGCTGTTATGGGTCTCGACATTCGTGAGATTCTGCTTCGTTGTCATTCGTACGTGAGGGTCCTGCTTTGCCGTTTGTGAGGATTTTTTTTTCTTAACCAGTGAAAGAAGAAAGAGAATGGAGGAAGAGGGAAGAAGAAGAAAAAATAGAGAAAAAAAGGGGTCCACCTCCAGCGACAGCGACGGCGGCGGTACAACGACCGCTGGTAAGAAGAAGAAGAAAAGAGAGAGAATTTAAAAAATATTTTTTTATTAATTTTATTTTAAAATTAAAAAATATTTTTTTAAATAAAAAAATAGGTGTCACGTCAACATTTCGTTAATATTTAATGAAAAAATGGATGGAGGGACTAAAATGAAACAAAATCTAAACCTCAGGTGCTAAATTGTCGAGTTTGAAAACTCAGGGACCAAAATGAAACCTAACCCAAACTCAAGGGACCAAAAGTGTATTTTTCCCAATATTTTTTTATTATTTTTCTTTTTCTTTTCCTTTCTTCTCCGTCAGTCGTCGCCGCCGCCTGCAAACTTTTTTTTTTCTTCTCTTTCCTTCTTCCTTCTCTTCTTTTTGTTTTTTTCCGCTATGCTGTGAGGATTTGTGGCTTGTCCTCTCTGAGCTCTAATTCTCTGTCGCTGCTGCAACACCACCATCGAAACCTCCTGCCGACGATGGAGTTTTGATTAGCACCAGATTTGAGAGTTCGATTTTGAGTATCGGATTAGGCATTTGAACTATGAAGAGCCTTTGATTTTAACGACGCAACCATGCATTGGAAGGAGATCGAAATCTGAAGTGGTGGTGGTGAGTAATTGTTGGTGAAGTATGTCCATGGCCATTTTAGCCATCGGGATGGTGTAATCAATCTGAATGGTTTCATTTTCAGGATTTGGCGACGCCCATGGTTGAGGAGGGAGGTCAGAGTGGGGATTTGGGAGACCAGCGAGGAGTTCCTAGGGAGGGGGGGATGGAGGAGAGGATTTGGTTGAGGAAATCGTCAGAGGTGAAGGGAGGGGGATGGAAATGGGAGGTTTGAAGGTGGTTTTGATGGTGGTGGAGTTGGGAGGCATCGGTGTCCGATGGTCGATTACGGCGGCAGTGATAGCGGTGGCCGACGACAACAACTAGAAGATCTGGAAGAAGAAGAAAGAATAAGAAAAAATAATAATTTTTTTTATTAATTTAATATTATTTTTTAAATAAAAAATAGGTGCCACGTCAACAATCCATTAGTTATTAACGAAAAAATGGATGGAGGGGCCAAAATGAAACGAAATCCAAATCTCTGGGCTAAAATGTCGAATTTAGGGACCAAAATGAAACCTAACCCAAACCTTAAGGACTAAAAATGTATTTTTCCCTTAGTACAAACATTATGTTAGTTGAGTTATGCTCAGATTGGCCCTAACCTAATAATTATTGATTAAATTGTTGTCTAAAAGAATCTAGAAAATGCATTCAAGTGTTAGAATAATAGAAGACCTAGAGAAAAAATGTATAAGATGCGTTTGGATTGAGCTGCAGATGACGGTGCATGTGCTGTGACACTACTCGAGTGCAAGTATACACCATCAAGTAATAAAGTGGAGAGTACTCCGGATATAGTACACAAGGGAGATGGTGACTAGTTGAAAAACACTCAATTCTATAAAACCAGAAGGTCATCTAAATTTGCAACCGAGAATGGTAACCAAAGAAATAATTTGATGGGGTTTTTGAGATTGAAGACAAAAAGATAAAAGAAAGCAAGAAAATAAAAGCGGTTAAAGATATATGAGATAAGCGGGGAATTCAAATAAGCATCAACCGAAAGCATTAAAATGCGCCCACCTTTGTGCTAGCAACTCACTCAAGCATTACACACGACCGGAGAATACTATCTATAAGTGCCCACATAGACATGGTGCAGATAGATTGCTACCAGTTTGTGCCCGCAAATATCCTGACAACTAGATTGTGAGTTAAGTCCTACTCCTATTCAACTCCGTTGTAGGTGTCTTTAGAAGACTAAGCCAATTATACAACTATTTCTAGGGCTAGCTGAAACTTAGATAATTATTGCACACGACTCCCAAAACTCTAGTGGTTCCAGTCGTATTTCTAGGATGCAAGAAAACAAAGTCCTATTTCTAGGATCTTTTCCACTATTGTTTTTGCGAACCCACAAATTCAACTCTATCCTTTCGGGCACCAGCTGAACACAAACTATGCTAACTTAAGTATTCGTTTTAAGCTAACAATGAAACTTAAACTTTCAGCAAAACACAAACCATGCTAAGAGGAAGCAAAGTTGCTTTTGCATCGGTGGGGCTTTCTTCTACTCAAGGTATCCACATATTTGAACCCCCGAGAAGAATCTTAGCTCATTGAGGAAATTAAAATGCAAGACATAAAGTAAAAAGCACACAAAGTAAAGAAACAACTTGAATTCATATTAATAATTAAAAAGAGTACATAAAATCAACTTACAACTGAAAATTGAATTAAAACAGAAAGTACAACAACTTGCATAAGAGAATAAACAGAAAGTAAAGACTCTAGACTCAACTAAAGGTTATTTCTCCTCTCTATCTAACTTGCTCTTAACCTTTTTCAAGGGAAGACAGGTCTTTCTCTTCTTCTTCTTTCGAATGGAAGAGCTGACAGAGACTAGAAGAACCAGAACTCGGAGTGGTTACAAGATGAGAAGAAAGAAAAGCAATAAAACTATCCTAAGGACGAAAATCTGAGCTCTCTTTGCTTCTTGCACCTTGGTCGTCTTATATAGACCTTGGAAGGTAGGGTTGGCTGCCGAGATCAGTGTGAGAGGACACTTGAAGGTAAAAATCCACAATCCTCTTGGAGATTTGATACGAGATTTGGGATTTTCGGATAATTTTGTGAAAATCCCGCGAATCTCGAAATTCTGTCGGAAAGTCCAGTTGCGGCCGCATCTCAGACACAAATTCCTCTATGCACTGCTTTGACAATTCTGTCTTCAGCTGGGGCTACTTTCCTTATCAGTTTGACGCAACTTAAACGCAATTTTCACATTCTCAAGACCGAATGTGGGTGCAAATCTTCAACTTCAACTCTTTGCTCCGCTAACTCTTTTTCTCCATTTGTGGGTGCATTTCCACTGCAAATTGTCCTCTGCACAAAAACATTAACTTGGATAAATTCTTACAAAAGTAATCACTTTTTTGAACATTTTAAGCATAAATTCTATATTTCTAAGATTTCCAACATGATTCTAAGACTTTTGCTAATTTGACTCTAAAAGGTATGATTTTAAGCACAAAGTCTTTGCTTTCCTCGCAATAGCCTAAGTTTTTAAGGCTAAATAGCGCATATAAATGAGTGTTATCAACAACCAATATTAATAATGCGCTTTACATACTGCATGTTTCTAACGCATCTACTGTAGGAAGTTAACTTACCCAAGGAAGAAATGACAATGTGGAGTACAGGCACGTGCTCAAAGCGTTGGGGTAGTGGAGCAGAATCTTGTTCAGTGCTGACAATGTACGATGAACCTAGCTCGACACGTTGGATTACCTAAATACATGAACCAATTGCTTGGGGACTGATGAGTGTTGTGGCACAAGACACTTCTAAGTGCAAGTATACACTATCAAGTAATAAAGTGGAGAGTACTCCGGATATCGTACACAAGGGAGATGGTGACTAGTTGAAAAACACTCAATTCTATAAAACAAGAATCTCCTCTAAATTTGCAACCGAGAATGGTAACCAAAGAAATAATTTGATGGGGTTTTCGAGATTGAAGACAAAAAGATAAAAGAAAGCAAGAAAATAAAAGCTGTTAAAGATATATGAGATAAGCGGGGAATTCAAATAAGCATCAACCGAAAGCATTAAAATGCGCCCACCTTTTCTCTAGCAACTCACTCAGGCATTGCACACGACCAGAGAATACTATCTATACTGCCCACATAGACATGGTGCAAATAGATTGCTCCACATCCGCAAATACCCTGACAACTAGATTGTGAGTTAAGTCTTACTCCTATTCAGCTCCGTTGTAGGTGCCTTTAGAAGACTACGCCAACTTGCTAGACATCTATTTCTAGGGCTAGCTAAAACTTAGATAATTATTGCACATGACTCTCAAAACTCTAGTGGTTCCAGTCCTATTTCTAGGATGCAAGAAAACAAAGTCCTATTTCTAGGATCTTTTCCGCTATTGCTTTTGCGAACCTGCGCATTCAACTCCTACCTTTTGCCCCCCAGCTGAACACAAACTATGTTAACTTAAGTGATCAGTT

mRNA sequence

ATGAGGGTTTTGCTTCGCCAAATTCGCATTGTCGTTTGTTCGATTGCTGTTGTGGATCTCGTTGTAGGAGGAGATTTCGCGATTGCGCTGTTATGGGATTTGGCGACGCCCATGGTTGAGGAGGGAGGTCAGAGTGGGGATTTGGGAGACCAGCGAGGAGTTCCTAGGGAGGGGGGGATGGAGGAGAGGATTTGGTTGAGGAAATCGTCAGAGGTGAAGGGAGGGGGATGGAAATGGGAGGAAGTTAACTTACCCAAGGAAGAAATGACAATGTGGAGTACAGGCACGTGCTCAAAGCGTTGGGGTAGTGGAGCAGAATCTTGTTCAGTGCTGACAATGTACGATGAACCTAGCTCGACACGTGCCTTTAGAAGACTACGCCAACTTGCTAGACATCTATTTCTAGGGCTAGCTAAAACTTAG

Coding sequence (CDS)

ATGAGGGTTTTGCTTCGCCAAATTCGCATTGTCGTTTGTTCGATTGCTGTTGTGGATCTCGTTGTAGGAGGAGATTTCGCGATTGCGCTGTTATGGGATTTGGCGACGCCCATGGTTGAGGAGGGAGGTCAGAGTGGGGATTTGGGAGACCAGCGAGGAGTTCCTAGGGAGGGGGGGATGGAGGAGAGGATTTGGTTGAGGAAATCGTCAGAGGTGAAGGGAGGGGGATGGAAATGGGAGGAAGTTAACTTACCCAAGGAAGAAATGACAATGTGGAGTACAGGCACGTGCTCAAAGCGTTGGGGTAGTGGAGCAGAATCTTGTTCAGTGCTGACAATGTACGATGAACCTAGCTCGACACGTGCCTTTAGAAGACTACGCCAACTTGCTAGACATCTATTTCTAGGGCTAGCTAAAACTTAG

Protein sequence

MRVLLRQIRIVVCSIAVVDLVVGGDFAIALLWDLATPMVEEGGQSGDLGDQRGVPREGGMEERIWLRKSSEVKGGGWKWEEVNLPKEEMTMWSTGTCSKRWGSGAESCSVLTMYDEPSSTRAFRRLRQLARHLFLGLAKT
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spg004311Spg004311gene


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg004311.1-three_prime_utrSpg004311.1-three_prime_utr-scaffold5:17588203..17588380three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spg004311.1-cdsSpg004311.1-cds-scaffold5:17588381..17588442CDS
Spg004311.1-cdsSpg004311.1-cds-scaffold5:17588944..17589064CDS
Spg004311.1-cdsSpg004311.1-cds-scaffold5:17591441..17591584CDS
Spg004311.1-cdsSpg004311.1-cds-scaffold5:17592456..17592551CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spg004311.1Spg004311.1-proteinpolypeptide