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Spg004045.1 (mRNA) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGAACGAATCATCAATCTTTGTCGGGCTTCTAACATCGGTATGTCAGTAAAAATTAAACCTCCAACTTCAAGACCTCAACAAGTTCAAACTCAAAACTCTTCATCGTTGGTCGAAGAAATCAACCTCAAATTCAAAGTCCAACTCAAATGGCATCAATTCCGAGTAGCCCAAGAAGGCAACTCGAATGCAACAACGTTGGTTGGTCAATACACAACTCGAAGACTTCCCTTAGTAGCTTACCGACTTCCTATTGCCATCTTCAACCATGACGACGAGACTCTGACACAATATCTGTCGTGGCAACTCGAAAGGTACGACGACATCATTAACATCCAAATTGTAGCTGAGGAGATATTAAAACATTGGGTTAAAGTCAGAGAGGAAGGGAATTCGAGTGTGTTTGAGAAAATTTATCCTCTTCAAGTTACGATGGAGTTCTGTAATTTTGAGATGCATTATGATGCAAGACAACGACGACCATCATCGATGATTGGAAATGTGAATTTCGACAGGATGGTTCCGACGAGAGAAGATGCTATGGAGAAGATGCTGAAGAGAGTGGAAATTGGTGATGATGAAAGTTGTTGTGTGATTTGCTTGGAAGAGATGACCAAAAAAGAGGAAGAAAAGATTGTGATAATGGAAATGCCTTGCTTGCATTTGTTTCATGAAGAATGTATAAAGAAGTGGTTGAAAACCAGTCATTGTTGTCCAACTTGTAGATTTTCAATGCCCACAAAATAA ATGGCGGAACGAATCATCAATCTTTGTCGGGCTTCTAACATCGGTATGTCAGTAAAAATTAAACCTCCAACTTCAAGACCTCAACAAGTTCAAACTCAAAACTCTTCATCGTTGGTCGAAGAAATCAACCTCAAATTCAAAGTCCAACTCAAATGGCATCAATTCCGAGTAGCCCAAGAAGGCAACTCGAATGCAACAACGTTGGTTGGTCAATACACAACTCGAAGACTTCCCTTAGTAGCTTACCGACTTCCTATTGCCATCTTCAACCATGACGACGAGACTCTGACACAATATCTGTCGTGGCAACTCGAAAGGTACGACGACATCATTAACATCCAAATTGTAGCTGAGGAGATATTAAAACATTGGGTTAAAGTCAGAGAGGAAGGGAATTCGAGTGTGTTTGAGAAAATTTATCCTCTTCAAGTTACGATGGAGTTCTGTAATTTTGAGATGCATTATGATGCAAGACAACGACGACCATCATCGATGATTGGAAATGTGAATTTCGACAGGATGGTTCCGACGAGAGAAGATGCTATGGAGAAGATGCTGAAGAGAGTGGAAATTGGTGATGATGAAAGTTGTTGTGTGATTTGCTTGGAAGAGATGACCAAAAAAGAGGAAGAAAAGATTGTGATAATGGAAATGCCTTGCTTGCATTTGTTTCATGAAGAATGTATAAAGAAGTGGTTGAAAACCAGTCATTGTTGTCCAACTTGTAGATTTTCAATGCCCACAAAATAA ATGGCGGAACGAATCATCAATCTTTGTCGGGCTTCTAACATCGGTATGTCAGTAAAAATTAAACCTCCAACTTCAAGACCTCAACAAGTTCAAACTCAAAACTCTTCATCGTTGGTCGAAGAAATCAACCTCAAATTCAAAGTCCAACTCAAATGGCATCAATTCCGAGTAGCCCAAGAAGGCAACTCGAATGCAACAACGTTGGTTGGTCAATACACAACTCGAAGACTTCCCTTAGTAGCTTACCGACTTCCTATTGCCATCTTCAACCATGACGACGAGACTCTGACACAATATCTGTCGTGGCAACTCGAAAGGTACGACGACATCATTAACATCCAAATTGTAGCTGAGGAGATATTAAAACATTGGGTTAAAGTCAGAGAGGAAGGGAATTCGAGTGTGTTTGAGAAAATTTATCCTCTTCAAGTTACGATGGAGTTCTGTAATTTTGAGATGCATTATGATGCAAGACAACGACGACCATCATCGATGATTGGAAATGTGAATTTCGACAGGATGGTTCCGACGAGAGAAGATGCTATGGAGAAGATGCTGAAGAGAGTGGAAATTGGTGATGATGAAAGTTGTTGTGTGATTTGCTTGGAAGAGATGACCAAAAAAGAGGAAGAAAAGATTGTGATAATGGAAATGCCTTGCTTGCATTTGTTTCATGAAGAATGTATAAAGAAGTGGTTGAAAACCAGTCATTGTTGTCCAACTTGTAGATTTTCAATGCCCACAAAATAA MAERIINLCRASNIGMSVKIKPPTSRPQQVQTQNSSSLVEEINLKFKVQLKWHQFRVAQEGNSNATTLVGQYTTRRLPLVAYRLPIAIFNHDDETLTQYLSWQLERYDDIINIQIVAEEILKHWVKVREEGNSSVFEKIYPLQVTMEFCNFEMHYDARQRRPSSMIGNVNFDRMVPTREDAMEKMLKRVEIGDDESCCVICLEEMTKKEEEKIVIMEMPCLHLFHEECIKKWLKTSHCCPTCRFSMPTK Homology
BLAST of Spg004045.1 vs. NCBI nr
Match: ADN34252.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo] >KAA0031412.1 putative zinc finger protein [Cucumis melo var. makuwa] >TYK06863.1 putative zinc finger protein [Cucumis melo var. makuwa]) HSP 1 Score: 220.3 bits (560), Expect = 1.8e-53 Identity = 127/267 (47.57%), Postives = 176/267 (65.92%), Query Frame = 0
BLAST of Spg004045.1 vs. NCBI nr
Match: KAA0031411.1 (putative zinc finger protein [Cucumis melo var. makuwa]) HSP 1 Score: 204.9 bits (520), Expect = 8.0e-49 Identity = 119/269 (44.24%), Postives = 167/269 (62.08%), Query Frame = 0
BLAST of Spg004045.1 vs. NCBI nr
Match: ADN34253.1 (hypothetical zinc finger protein [Cucumis melo subsp. melo] >TYK06864.1 putative zinc finger protein [Cucumis melo var. makuwa]) HSP 1 Score: 203.8 bits (517), Expect = 1.8e-48 Identity = 119/265 (44.91%), Postives = 174/265 (65.66%), Query Frame = 0
BLAST of Spg004045.1 vs. NCBI nr
Match: KAA0031413.1 (putative zinc finger protein [Cucumis melo var. makuwa]) HSP 1 Score: 201.8 bits (512), Expect = 6.8e-48 Identity = 118/265 (44.53%), Postives = 174/265 (65.66%), Query Frame = 0
BLAST of Spg004045.1 vs. NCBI nr
Match: TYK06862.1 (putative zinc finger protein [Cucumis melo var. makuwa]) HSP 1 Score: 201.8 bits (512), Expect = 6.8e-48 Identity = 118/269 (43.87%), Postives = 166/269 (61.71%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.1e-08 Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy Swiss-Prot
Match: Q9LQX2 (E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana OX=3702 GN=MPSR1 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.4e-08 Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.6e-07 Identity = 32/77 (41.56%), Postives = 41/77 (53.25%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy Swiss-Prot
Match: Q3T0W3 (E3 ubiquitin-protein ligase RNF181 OS=Bos taurus OX=9913 GN=RNF181 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.6e-07 Identity = 30/74 (40.54%), Postives = 40/74 (54.05%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy Swiss-Prot
Match: Q9P0P0 (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 4.6e-07 Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy TrEMBL
Match: A0A5D3C4K6 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001670 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 8.9e-54 Identity = 127/267 (47.57%), Postives = 176/267 (65.92%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy TrEMBL
Match: E5GCQ3 (Hypothetical zinc finger protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 8.9e-54 Identity = 127/267 (47.57%), Postives = 176/267 (65.92%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy TrEMBL
Match: A0A0A0K7L0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 2.9e-52 Identity = 127/267 (47.57%), Postives = 179/267 (67.04%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy TrEMBL
Match: A0A5A7SPE2 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001670 PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 3.9e-49 Identity = 119/269 (44.24%), Postives = 167/269 (62.08%), Query Frame = 0
BLAST of Spg004045.1 vs. ExPASy TrEMBL
Match: A0A5D3C6G9 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001680 PE=4 SV=1) HSP 1 Score: 203.8 bits (517), Expect = 8.6e-49 Identity = 119/265 (44.91%), Postives = 174/265 (65.66%), Query Frame = 0
BLAST of Spg004045.1 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 62.0 bits (149), Expect = 7.8e-10 Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0
BLAST of Spg004045.1 vs. TAIR 10
Match: AT5G60820.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 1.0e-09 Identity = 29/72 (40.28%), Postives = 38/72 (52.78%), Query Frame = 0
BLAST of Spg004045.1 vs. TAIR 10
Match: AT1G26800.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.8 bits (146), Expect = 1.7e-09 Identity = 30/59 (50.85%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of Spg004045.1 vs. TAIR 10
Match: AT3G58720.1 (RING/U-box superfamily protein ) HSP 1 Score: 60.5 bits (145), Expect = 2.3e-09 Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0
BLAST of Spg004045.1 vs. TAIR 10
Match: AT3G58720.2 (RING/U-box superfamily protein ) HSP 1 Score: 60.5 bits (145), Expect = 2.3e-09 Identity = 29/59 (49.15%), Postives = 36/59 (61.02%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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